Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_001731.1
Length=190289
Score E
Sequences producing significant alignments: (Bits) Value
seq1 271 9e-68
seq17 95.1 1e-14
seq29 93.3 5e-14
>seq1
Length=45942467
Score = 271 bits (300), Expect = 9e-68
Identities = 263/338 (78%), Gaps = 0/338 (0%)
Strand=Plus/Plus
Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116
|||||||| ||||| |||| ||| | | | | || || ||||| |||||||||||||
Sbjct 28256551 AGCAGGGCTTCGATATCGGCCTCGATGTCGATAGTTGGGAAGCGGCGGCTGTACCTGCGA 28256610
Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176
|| ||| ||||| | |||||| | |||||||||||||||||||| | ||||||||||
Sbjct 28256611 ACAGGCACACCGTCGGGACCCACTAGGAACTTCTCGAAGTTCCAGGAGATGTCGTTGCGG 28256670
Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236
||||| ||||||||| |||| || ||| ||| ||| ||| | | ||||||||
Sbjct 28256671 CACACCGGAGACCAGATGATGAACTTGGGATCGGTCATGAGTGCAGTGGCATCGTCGCTG 28256730
Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296
||||||||||||||||| || || |||||||||||||| |||||| ||| ||||| |||
Sbjct 28256731 GGCGCCGGCAGGGCCTCCCGCAGAAAGGCGAAGAGCGGGTGTGCCTGTGCGCCGTTCACC 28256790
Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356
|||||||||||||| ||| | ||||| |||||||| ||| || || | |||| |||
Sbjct 28256791 TCGCACTTCTCGAAAAGCGTGAAGTTGGGCTCGAACCCGCCGCCTGGTCTTACGTACTTG 28256850
Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394
||| || || |||||| | || | |||||| |||||
Sbjct 28256851 AGGCAATTCAGGATCTCTTCGTTTTTGGCGTTCTCCTG 28256888
Score = 188 bits (208), Expect = 9e-43
Identities = 181/232 (78%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450
|||| || || |||||||| |||||||| || ||||| ||||| ||||| | || ||||
Sbjct 28257161 CCTGATGGCCAAACTGGTTGCACGGGAAGCCGAGCACGACCAGGCCCCGGGGGCCGAGGC 28257220
Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510
|||||||||| || |||||||| ||||| |||||||||||| | |||||||| ||||| |
Sbjct 28257221 GCCGCTGCAGATCATTCATCTGGGTGTAGTCCCGGACCGTGGTGCCTCAGAGCGACGCCA 28257280
Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570
||||||||||||||| ||| |||||| | |||| | |||||| || || || ||||
Sbjct 28257281 CGTTCTCGATGAGCAGCACCTTGCCCCGCAGCGAGCCCAGGCTCACTGGCTCCCCGCCGG 28257340
Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGATCTGGTCTCTGCCGCGGCAAG 83622
| |||| || |||||||||| ||| || | | ||||||| || ||
Sbjct 28257341 CCAGGCGGCGAGCAGAGAAGGCGTGCACCGAGCGCGGGACTGCCGCCGCGAG 28257392
>seq17
Length=26699591
Score = 95.1 bits (104), Expect = 1e-14
Identities = 186/267 (70%), Gaps = 6/267 (2%)
Strand=Plus/Minus
Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468
||| ||||||| || |||| | ||| || ||||||| |||||| || || |||
Sbjct 16057174 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCTATCGGCAACTTTGCCTCCCGCCTGC 16057116
Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528
| ||| || | || || |||||||| || |||||||| | | ||| | |||||||
Sbjct 16057115 TGGTGCACCTCTTCCCCGAGCTCTTCACCCACGAGAACCTTCGTAAGCAGTACAACTGCA 16057056
Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGC-GCTTGCTCCGGCACTA 50586
||| ||| |||||||| |||| || |||||| ||| | |||| || | |||||
Sbjct 16057055 GCGGTTCCCTGGGCAAGAAGCAG-CTGGACCCGTCCCGCATCAAGCTTATTC-GCCACTA 16056998
Query 50587 TGTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGC 50646
|||||||||||| |||| ||| || || || || |||| | |||| |||
Sbjct 16056997 TGTGCAGTTGCTCTACCCACGGGCCAAAAATGACCGTGTCTGGACTCTAGAGTTTGTGGG 16056938
Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCG 50673
|| || |||||||||||||||||
Sbjct 16056937 CAAGCTAGATGAGCGCTGCCGGCGCCG 16056911
>seq29
Length=23005217
Score = 93.3 bits (102), Expect = 5e-14
Identities = 116/159 (73%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 83059 CAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCAC 83118
|||||||| ||||||| ||| | | | || || ||| ||||||| ||||| ||||
Sbjct 11339604 CAGGGCCTTGATGTCGACCTCGATGTTGATAGTTGGGAAGCAGTGGCTGGACCTGAGCAC 11339545
Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178
|| | |||| ||||| | |||||||| ||||| ||| | ||||||||||||
Sbjct 11339544 ACGCACACTGTCACAGCCCACTAGGAACTTCTTCAAGTTATAGGAGATGTCGTTGCGGCA 11339485
Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAG 83217
||| ||||||||| |||||| ||||| | ||| |||
Sbjct 11339484 CACCAGAGACCAGGTCGTGAGCTTGGGGTTGGTCATGAG 11339446
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 608748682222920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |