Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq1 271 9e-68 seq17 95.1 1e-14 seq29 93.3 5e-14 >seq1 Length=45942467 Score = 271 bits (300), Expect = 9e-68 Identities = 263/338 (78%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| ||||| |||| ||| | | | | || || ||||| ||||||||||||| Sbjct 28256551 AGCAGGGCTTCGATATCGGCCTCGATGTCGATAGTTGGGAAGCGGCGGCTGTACCTGCGA 28256610 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| ||||| | |||||| | |||||||||||||||||||| | |||||||||| Sbjct 28256611 ACAGGCACACCGTCGGGACCCACTAGGAACTTCTCGAAGTTCCAGGAGATGTCGTTGCGG 28256670 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| ||||||||| |||| || ||| ||| ||| ||| | | |||||||| Sbjct 28256671 CACACCGGAGACCAGATGATGAACTTGGGATCGGTCATGAGTGCAGTGGCATCGTCGCTG 28256730 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 ||||||||||||||||| || || |||||||||||||| |||||| ||| ||||| ||| Sbjct 28256731 GGCGCCGGCAGGGCCTCCCGCAGAAAGGCGAAGAGCGGGTGTGCCTGTGCGCCGTTCACC 28256790 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||| ||| | ||||| |||||||| ||| || || | |||| ||| Sbjct 28256791 TCGCACTTCTCGAAAAGCGTGAAGTTGGGCTCGAACCCGCCGCCTGGTCTTACGTACTTG 28256850 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 ||| || || |||||| | || | |||||| ||||| Sbjct 28256851 AGGCAATTCAGGATCTCTTCGTTTTTGGCGTTCTCCTG 28256888 Score = 188 bits (208), Expect = 9e-43 Identities = 181/232 (78%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || ||||| ||||| ||||| | || |||| Sbjct 28257161 CCTGATGGCCAAACTGGTTGCACGGGAAGCCGAGCACGACCAGGCCCCGGGGGCCGAGGC 28257220 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||| || |||||||| ||||| |||||||||||| | |||||||| ||||| | Sbjct 28257221 GCCGCTGCAGATCATTCATCTGGGTGTAGTCCCGGACCGTGGTGCCTCAGAGCGACGCCA 28257280 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 ||||||||||||||| ||| |||||| | |||| | |||||| || || || |||| Sbjct 28257281 CGTTCTCGATGAGCAGCACCTTGCCCCGCAGCGAGCCCAGGCTCACTGGCTCCCCGCCGG 28257340 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGATCTGGTCTCTGCCGCGGCAAG 83622 | |||| || |||||||||| ||| || | | ||||||| || || Sbjct 28257341 CCAGGCGGCGAGCAGAGAAGGCGTGCACCGAGCGCGGGACTGCCGCCGCGAG 28257392 >seq17 Length=26699591 Score = 95.1 bits (104), Expect = 1e-14 Identities = 186/267 (70%), Gaps = 6/267 (2%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||||||| |||||| || || ||| Sbjct 16057174 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCTATCGGCAACTTTGCCTCCCGCCTGC 16057116 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || | || || |||||||| || |||||||| | | ||| | ||||||| Sbjct 16057115 TGGTGCACCTCTTCCCCGAGCTCTTCACCCACGAGAACCTTCGTAAGCAGTACAACTGCA 16057056 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGC-GCTTGCTCCGGCACTA 50586 ||| ||| |||||||| |||| || |||||| ||| | |||| || | ||||| Sbjct 16057055 GCGGTTCCCTGGGCAAGAAGCAG-CTGGACCCGTCCCGCATCAAGCTTATTC-GCCACTA 16056998 Query 50587 TGTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGC 50646 |||||||||||| |||| ||| || || || || |||| | |||| ||| Sbjct 16056997 TGTGCAGTTGCTCTACCCACGGGCCAAAAATGACCGTGTCTGGACTCTAGAGTTTGTGGG 16056938 Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCG 50673 || || ||||||||||||||||| Sbjct 16056937 CAAGCTAGATGAGCGCTGCCGGCGCCG 16056911 >seq29 Length=23005217 Score = 93.3 bits (102), Expect = 5e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 83059 CAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCAC 83118 |||||||| ||||||| ||| | | | || || ||| ||||||| ||||| |||| Sbjct 11339604 CAGGGCCTTGATGTCGACCTCGATGTTGATAGTTGGGAAGCAGTGGCTGGACCTGAGCAC 11339545 Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 || | |||| ||||| | |||||||| ||||| ||| | |||||||||||| Sbjct 11339544 ACGCACACTGTCACAGCCCACTAGGAACTTCTTCAAGTTATAGGAGATGTCGTTGCGGCA 11339485 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAG 83217 ||| ||||||||| |||||| ||||| | ||| ||| Sbjct 11339484 CACCAGAGACCAGGTCGTGAGCTTGGGGTTGGTCATGAG 11339446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608748682222920