Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq131 109 5e-19
seq40 105 6e-18
seq24 89.7 4e-13
>seq131
Length=8015323
Score = 109 bits (120), Expect = 5e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
|| |||| |||| |||||||| || || ||||| ||||| | |||||| | | ||
Sbjct 2518430 AGGACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGTCCATCT 2518489
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|||||||| ||||| ||| | || | ||||||||||| || | ||||||||||||
Sbjct 2518490 TCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 2518549
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
||||||| || || | | | || |||| |||||| ||| | ||| || |||
Sbjct 2518550 TGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATTGTC 2518609
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176
|| ||||| || || || || || || ||||||
Sbjct 2518610 TTACCGGTCAAGGTCTTCACGAAGATCTGCATT 2518642
>seq40
Length=19935044
Score = 105 bits (116), Expect = 6e-18
Identities = 148/208 (71%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032
|||| || |||||||| || ||||| ||||| | || || || | || ||||||||
Sbjct 1219241 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 1219182
Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092
||||| ||| | || || ||||||||||| || | |||||| || || ||||||
Sbjct 1219181 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTA 1219122
Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152
|| || | ||| || |||| ||| ||| |||| ||| |||||||| || |||
Sbjct 1219121 GCCTTTACGTTCTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCCGTT 1219062
Query 21153 AACGTTTTGACAAATATTTGCATTTTGA 21180
| || || || || ||||||||| |||
Sbjct 1219061 AGGGTCTTTACGAAAATTTGCATTCTGA 1219034
>seq24
Length=24352400
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/206 (70%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 20981 GGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGC 21040
||||| ||| || |||||||| || | || || || | ||||||||||||||||| ||
Sbjct 13198980 GGACTGCTTCTGGATGTTATACTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGC 13199039
Query 21041 ATAAATAAGTCTCTGCTGGTCCACGG-GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCA 21099
| |||| || ||||||||| || | | ||| |||||||| ||| || ||| |
Sbjct 13199040 ACAAATCAGATGCTGCTGGTCAGGGGAGGATGCCCTCCTTGTCCTGGATTTTGGCTTTGA 13199099
Query 21100 CCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTT 21159
| | ||| || |||| |||||| || | ||| ||||||||||| | | || |
Sbjct 13199100 CGTTCTCGATGGTGTCACTGGGCTCAACCTCGAAGGTGATGGTCTTGCCCATCAGGGTCT 13199159
Query 21160 TGACAAATATTTGCAT-TTTGAATCT 21184
| | || |||||||| | || ||||
Sbjct 13199160 TCATGAAGATTTGCATCTCTGCATCT 13199185
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422226660046268
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |