Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq131 109 5e-19 seq40 105 6e-18 seq24 89.7 4e-13 >seq131 Length=8015323 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| |||||||| || || ||||| ||||| | |||||| | | || Sbjct 2518430 AGGACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGTCCATCT 2518489 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| ||| | || | ||||||||||| || | |||||||||||| Sbjct 2518490 TCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCT 2518549 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||| || || | | | || |||| |||||| ||| | ||| || ||| Sbjct 2518550 TGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATTGTC 2518609 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || ||||| || || || || || || |||||| Sbjct 2518610 TTACCGGTCAAGGTCTTCACGAAGATCTGCATT 2518642 >seq40 Length=19935044 Score = 105 bits (116), Expect = 6e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||| || |||||||| || ||||| ||||| | || || || | || |||||||| Sbjct 1219241 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 1219182 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 ||||| ||| | || || ||||||||||| || | |||||| || || |||||| Sbjct 1219181 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTA 1219122 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 || || | ||| || |||| ||| ||| |||| ||| |||||||| || ||| Sbjct 1219121 GCCTTTACGTTCTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCCGTT 1219062 Query 21153 AACGTTTTGACAAATATTTGCATTTTGA 21180 | || || || || ||||||||| ||| Sbjct 1219061 AGGGTCTTTACGAAAATTTGCATTCTGA 1219034 >seq24 Length=24352400 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 20981 GGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGC 21040 ||||| ||| || |||||||| || | || || || | ||||||||||||||||| || Sbjct 13198980 GGACTGCTTCTGGATGTTATACTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGC 13199039 Query 21041 ATAAATAAGTCTCTGCTGGTCCACGG-GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCA 21099 | |||| || ||||||||| || | | ||| |||||||| ||| || ||| | Sbjct 13199040 ACAAATCAGATGCTGCTGGTCAGGGGAGGATGCCCTCCTTGTCCTGGATTTTGGCTTTGA 13199099 Query 21100 CCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTT 21159 | | ||| || |||| |||||| || | ||| ||||||||||| | | || | Sbjct 13199100 CGTTCTCGATGGTGTCACTGGGCTCAACCTCGAAGGTGATGGTCTTGCCCATCAGGGTCT 13199159 Query 21160 TGACAAATATTTGCAT-TTTGAATCT 21184 | | || |||||||| | || |||| Sbjct 13199160 TCATGAAGATTTGCATCTCTGCATCT 13199185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422226660046268