Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq87 140 3e-28
seq40 138 1e-27
seq131 127 2e-24
seq24 116 4e-21
seq59 104 2e-17
seq209 93.3 4e-14
>seq87
Length=11743621
Score = 140 bits (154), Expect = 3e-28
Identities = 384/580 (66%), Gaps = 9/580 (2%)
Strand=Plus/Minus
Query 116633 GACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGAC 116692
|| || |||| ||||| || || || ||| | || || ||||| | |||||| ||||
Sbjct 8843000 GATATTTGGCAGATGTATAAGAAAGCTGAGCCTTCCTTTTGGACTGCTGAGGAGCTGGAT 8842941
Query 116693 CTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTT--CATC 116749
|| |||||||||| ||| ||||||| | |||| || || | |||| ||||
Sbjct 8842940 CTTTCCAAGGACATTCAGC-ACTGGGAAGCCCTGAAGCCTAAAGAAAGATATTTTACATC 8842882
Query 116750 AAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAG 116809
| || || ||||| || || || || ||||| ||||| | || || || || | | |
Sbjct 8842881 A--CATGTTCTGGCTTTCTTTGCAGCAAGCGATGGCATAATGAATGAAAACTTGCTGGTG 8842824
Query 116810 CG-TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGC 116868
|| ||| || || | || ||| | | || || | || |||| ||||| || || ||
Sbjct 8842823 CGATTTAGC-CAACAAGTTCAGATTACAGAAGCCTGCTGTCTCTATGGCTTCCAAATTGC 8842765
Query 116869 CATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTC 116928
||||| ||| | || || |||||||| ||| | ||||| ||| | |||
Sbjct 8842764 AATGGAAAACATACATTCTGAAATGTACAATCTCCTTACTGACACTTACATTAAAGATTC 8842705
Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988
|||| | | | | || || ||||| || || ||||| || || || |||||||
Sbjct 8842704 CAAGGAAAGGGAGTTTCTCTTCAATGCCATTGA-ACAATGCCTTGTGTAAAGAAGAAGGC 8842646
Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048
|| ||||| ||| ||||||| | | ||| || ||| || || | || ||
Sbjct 8842645 AGATTGGGCCTTGCATTGGATCGGGGAAAAAGAAGCTACCTATGGTAAGTGTGATGTAGC 8842586
Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108
||| || | | || || |||||||||| || ||| || ||||||| || |||||
Sbjct 8842585 CTTTGCCCCAATAGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGACTCAA 8842526
Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168
|||||| || | ||||| ||||| || | ||| || |||| ||| || ||| |
Sbjct 8842525 GAAACGAGGATTAATGCCTGGCCTCACATGTTCCAATGAATTCATTAGCAGAGATGAGAG 8842466
Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208
| | || || |||||| |||| | |||||| || |||
Sbjct 8842465 TTTACACTGTGACTTTACCTGCATAGCGTTCAAACACTTG 8842426
>seq40
Length=19935044
Score = 138 bits (152), Expect = 1e-27
Identities = 155/205 (76%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
||||||||| |||||||| || || ||||| || ||||||||| | || || ||| |||
Sbjct 1219038 AATGCAAATTTTCGTAAAGACCCTAACGGGAAAGACCATCACCCTGGAGGTGGAACCCAG 1219097
Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
|||| | | | |||| | |||| || || | || ||||| |||||||| | ||||
Sbjct 1219098 TGACACCATCGAGAACG-TAAAGGCTAAGATCCAGGATAAAGAAGGCATCCCTCCTGACC 1219156
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
|||| | ||||||| || ||||| |||||||| || | ||||| || |||||||
Sbjct 1219157 AGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACA 1219216
Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892
|||||||||||||| | || |||||
Sbjct 1219217 ACATCCAGAAGGAGTCGACCCTGCA 1219241
>seq131
Length=8015323
Score = 127 bits (140), Expect = 2e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
|||||| || ||||| || || | || || || || |||||| | || || || |||
Sbjct 2518642 AATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACAATCACCCTTGAAGTAGAGCCCAG 2518583
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | | |||||| ||| || | ||||| || ||||| || | |||||
Sbjct 2518582 TGACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCA 2518523
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| | | |||| || ||||| |||||||| || | || ||||| ||||||||
Sbjct 2518522 GCAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACCCTGTCTGACTACAA 2518463
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||||||| ||| |||||||||| || || ||||||||||||| ||
Sbjct 2518462 CATCCAGAAAGAGTCCACGCTGCACCTGGTCCTGCGCTTGAGGGGAGG 2518415
>seq24
Length=24352400
Score = 116 bits (128), Expect = 4e-21
Identities = 167/230 (73%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||| | || || || | |||||| ||||||||| |||| || || |||
Sbjct 13199175 ATGCAAATCTTCATGAAGACCCTGATGGGCAAGACCATCACCTTCGAGGTTGAGCCCAGT 13199116
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCC-CCGCGGACC 40807
|||| | | | |||| |||| | ||||| | ||||| |||||||||| || | ||||
Sbjct 13199115 GACACCATCGAGAACG-TCAAAGCCAAAATCCAGGACAAGGAGGGCATCCTCCCCTGACC 13199057
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
|||| | || || | || |||||||||||||| || | ||||| ||| || || |
Sbjct 13199056 AGCAGCATCTGATTTGTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGAGTATA 13198997
Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||||||| || || | ||| | || | | |||| ||| || |||
Sbjct 13198996 ACATCCAGAAGCAGTCCTC-CTGTACCTGGCGCTGCGTCTGAATGGTGGC 13198948
>seq59
Length=15706754
Score = 104 bits (114), Expect = 2e-17
Identities = 152/211 (72%), Gaps = 3/211 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || | ||||| ||||| |||||||| | || |||| |||
Sbjct 4366366 ATGCAGATCTTTGTGAAGATCCTCACAGGCAAGACCATCACTCTTGAGTTCGAGCCCAGT 4366307
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| |||| | ||||| | ||||| ||||||||| || | |||||
Sbjct 4366306 GACATCATCAAGAACG-TCAAAGCCAAAATCCAAGACAAGGAGGGCATCTCCCCCGACCA 4366248
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || || | | |||||| ||||||| ||| | | ||| ||| | ||||||||
Sbjct 4366247 GCAGCGTCTGACTGTTACAGGCAAAGAGCTGGAGGACAATCACACTCTCTA-GACTACAA 4366189
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
||| ||||| ||| |||| |||| || |||
Sbjct 4366188 CATTCAGAAAGAGTCCACCATGCACCTGGTG 4366158
>seq209
Length=4208363
Score = 93.3 bits (102), Expect = 4e-14
Identities = 136/190 (72%), Gaps = 3/190 (2%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
||||||||||| ||| |||| | || || ||||| ||||||||| | || || ||| ||
Sbjct 4009662 AAAATGCAAATCTTCATAAAGATCCTGACTGGCAAGACCATCACCCTGGAGGTGGAACCC 4009603
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| |||| | | | | | |||| || | | || ||||| |||||||| | |||
Sbjct 4009602 AGGGACACCATTGAGAACATAAAGGCTAAGCTCCAGGATAAAGAAGGCATCCCTCCTGAC 4009543
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| | ||||||| || ||||| || || || || | ||||| || ||||||
Sbjct 4009542 CAGCAGAGGCTCATCTTTGCAGGCAAGCACCT-GAAGATGGTCGCACTTTC--TGACTAC 4009486
Query 40867 AACATCCAGA 40876
||||||||||
Sbjct 4009485 AACATCCAGA 4009476
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515178478362480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |