Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq87 140 3e-28 seq40 138 1e-27 seq131 127 2e-24 seq24 116 4e-21 seq59 104 2e-17 seq209 93.3 4e-14 >seq87 Length=11743621 Score = 140 bits (154), Expect = 3e-28 Identities = 384/580 (66%), Gaps = 9/580 (2%) Strand=Plus/Minus Query 116633 GACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGAC 116692 || || |||| ||||| || || || ||| | || || ||||| | |||||| |||| Sbjct 8843000 GATATTTGGCAGATGTATAAGAAAGCTGAGCCTTCCTTTTGGACTGCTGAGGAGCTGGAT 8842941 Query 116693 CTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTT--CATC 116749 || |||||||||| ||| ||||||| | |||| || || | |||| |||| Sbjct 8842940 CTTTCCAAGGACATTCAGC-ACTGGGAAGCCCTGAAGCCTAAAGAAAGATATTTTACATC 8842882 Query 116750 AAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAG 116809 | || || ||||| || || || || ||||| ||||| | || || || || | | | Sbjct 8842881 A--CATGTTCTGGCTTTCTTTGCAGCAAGCGATGGCATAATGAATGAAAACTTGCTGGTG 8842824 Query 116810 CG-TTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGC 116868 || ||| || || | || ||| | | || || | || |||| ||||| || || || Sbjct 8842823 CGATTTAGC-CAACAAGTTCAGATTACAGAAGCCTGCTGTCTCTATGGCTTCCAAATTGC 8842765 Query 116869 CATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTC 116928 ||||| ||| | || || |||||||| ||| | ||||| ||| | ||| Sbjct 8842764 AATGGAAAACATACATTCTGAAATGTACAATCTCCTTACTGACACTTACATTAAAGATTC 8842705 Query 116929 GGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGC 116988 |||| | | | | || || ||||| || || ||||| || || || ||||||| Sbjct 8842704 CAAGGAAAGGGAGTTTCTCTTCAATGCCATTGA-ACAATGCCTTGTGTAAAGAAGAAGGC 8842646 Query 116989 CGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGC 117048 || ||||| ||| ||||||| | | ||| || ||| || || | || || Sbjct 8842645 AGATTGGGCCTTGCATTGGATCGGGGAAAAAGAAGCTACCTATGGTAAGTGTGATGTAGC 8842586 Query 117049 CTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAA 117108 ||| || | | || || |||||||||| || ||| || ||||||| || ||||| Sbjct 8842585 CTTTGCCCCAATAGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGACTCAA 8842526 Query 117109 GAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGG 117168 |||||| || | ||||| ||||| || | ||| || |||| ||| || ||| | Sbjct 8842525 GAAACGAGGATTAATGCCTGGCCTCACATGTTCCAATGAATTCATTAGCAGAGATGAGAG 8842466 Query 117169 TCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 | | || || |||||| |||| | |||||| || ||| Sbjct 8842465 TTTACACTGTGACTTTACCTGCATAGCGTTCAAACACTTG 8842426 >seq40 Length=19935044 Score = 138 bits (152), Expect = 1e-27 Identities = 155/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| |||||||| || || ||||| || ||||||||| | || || ||| ||| Sbjct 1219038 AATGCAAATTTTCGTAAAGACCCTAACGGGAAAGACCATCACCCTGGAGGTGGAACCCAG 1219097 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | |||| | |||| || || | || ||||| |||||||| | |||| Sbjct 1219098 TGACACCATCGAGAACG-TAAAGGCTAAGATCCAGGATAAAGAAGGCATCCCTCCTGACC 1219156 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| | ||||||| || ||||| |||||||| || | ||||| || ||||||| Sbjct 1219157 AGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACA 1219216 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||||| | || ||||| Sbjct 1219217 ACATCCAGAAGGAGTCGACCCTGCA 1219241 >seq131 Length=8015323 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || | || || || || |||||| | || || || ||| Sbjct 2518642 AATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACAATCACCCTTGAAGTAGAGCCCAG 2518583 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | |||||| ||| || | ||||| || ||||| || | ||||| Sbjct 2518582 TGACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCA 2518523 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || ||||| |||||||| || | || ||||| |||||||| Sbjct 2518522 GCAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACCCTGTCTGACTACAA 2518463 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| ||| |||||||||| || || ||||||||||||| || Sbjct 2518462 CATCCAGAAAGAGTCCACGCTGCACCTGGTCCTGCGCTTGAGGGGAGG 2518415 >seq24 Length=24352400 Score = 116 bits (128), Expect = 4e-21 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||| | || || || | |||||| ||||||||| |||| || || ||| Sbjct 13199175 ATGCAAATCTTCATGAAGACCCTGATGGGCAAGACCATCACCTTCGAGGTTGAGCCCAGT 13199116 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCC-CCGCGGACC 40807 |||| | | | |||| |||| | ||||| | ||||| |||||||||| || | |||| Sbjct 13199115 GACACCATCGAGAACG-TCAAAGCCAAAATCCAGGACAAGGAGGGCATCCTCCCCTGACC 13199057 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| | || || | || |||||||||||||| || | ||||| ||| || || | Sbjct 13199056 AGCAGCATCTGATTTGTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGAGTATA 13198997 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| || || | ||| | || | | |||| ||| || ||| Sbjct 13198996 ACATCCAGAAGCAGTCCTC-CTGTACCTGGCGCTGCGTCTGAATGGTGGC 13198948 >seq59 Length=15706754 Score = 104 bits (114), Expect = 2e-17 Identities = 152/211 (72%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || | ||||| ||||| |||||||| | || |||| ||| Sbjct 4366366 ATGCAGATCTTTGTGAAGATCCTCACAGGCAAGACCATCACTCTTGAGTTCGAGCCCAGT 4366307 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||| | ||||| | ||||| ||||||||| || | ||||| Sbjct 4366306 GACATCATCAAGAACG-TCAAAGCCAAAATCCAAGACAAGGAGGGCATCTCCCCCGACCA 4366248 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || | | |||||| ||||||| ||| | | ||| ||| | |||||||| Sbjct 4366247 GCAGCGTCTGACTGTTACAGGCAAAGAGCTGGAGGACAATCACACTCTCTA-GACTACAA 4366189 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||| ||||| ||| |||| |||| || ||| Sbjct 4366188 CATTCAGAAAGAGTCCACCATGCACCTGGTG 4366158 >seq209 Length=4208363 Score = 93.3 bits (102), Expect = 4e-14 Identities = 136/190 (72%), Gaps = 3/190 (2%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||| |||| | || || ||||| ||||||||| | || || ||| || Sbjct 4009662 AAAATGCAAATCTTCATAAAGATCCTGACTGGCAAGACCATCACCCTGGAGGTGGAACCC 4009603 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | | |||| || | | || ||||| |||||||| | ||| Sbjct 4009602 AGGGACACCATTGAGAACATAAAGGCTAAGCTCCAGGATAAAGAAGGCATCCCTCCTGAC 4009543 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | ||||||| || ||||| || || || || | ||||| || |||||| Sbjct 4009542 CAGCAGAGGCTCATCTTTGCAGGCAAGCACCT-GAAGATGGTCGCACTTTC--TGACTAC 4009486 Query 40867 AACATCCAGA 40876 |||||||||| Sbjct 4009485 AACATCCAGA 4009476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515178478362480