Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq4 132 3e-26 seq256 82.4 5e-11 >seq4 Length=36583390 Score = 132 bits (146), Expect = 3e-26 Identities = 347/520 (67%), Gaps = 11/520 (2%) Strand=Plus/Minus Query 97149 ATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTG 97208 |||||| |||||| | ||||| ||||| || ||||| | |||| || || || | ||| Sbjct 19718182 ATAGCTGGCAATGGTGAAAGGTACCCCCAGGCCCATGTATCCTGACCTCTGCTACAGCTG 19718123 Query 97209 ACAGGAAAGCTTTCCAT-CACACACATAAAACTGACTCAATACATGACAGGGGGGCAACG 97267 |||| |||| | | ||| |||| | ||||| | | |||| ||||| | | || Sbjct 19718122 GCAGGTCAGCTCACTGTTCAC-CACAGAGAACTGGCAAAGGGCATGGCAGGGAGTTAGCG 19718064 Query 97268 CCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTCTATCGGTTGGGT 97327 || | | |||| || |||| |||| ||||| | |||||||| | | |||| Sbjct 19718063 CCGTCTGAGGAAGGCCTTGTGGATTCTAAGCGCACATGATGATTCTTCTGT-GTCAGGGT 19718005 Query 97328 TTGTGTGTATGGTATTAATTATCTGCTTTAATTGATCAACGCCTT---CTCCACCATAAT 97384 | || | || || | | | | || | | || || || |||| || |||||| Sbjct 19718004 TGGTTTTGATTGTGTCAGTAACCTTTTGCAGCTGGTCTACTCCTTGACCTACACCATC-- 19717947 Query 97385 TGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTC 97444 || || ||| ||| ||||||||| ||||||||||||| || || |||||||| || | Sbjct 19717946 TGAA-TTCAGATCTTTATATTCTGCCTCAAAATGCCTCCACTGAAAGCCATAAACTGGGC 19717888 Query 97445 CAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCAT 97504 | ||||||||||||| |||| || || | || ||| || | || ||| Sbjct 19717887 CTGAATCTCCTTCTTCTCAGGTGAAGAATCCCAGGCTGTCCAAAAAGTCTCGGGACCCAC 19717828 Query 97505 TTGCATCCCAAATGTGCACACCAGATGCTGCAAGCTCTTTGCTGTCAGTAGATCCTCTGA 97564 | |||||||| || | ||| || | | || ||| | | || |||||| ||| Sbjct 19717827 TGGCATCCCAGATCTTCACTCCCTTGGAAGACAGTTCTCTAGCATTGGTGGATCCT-TGA 19717769 Query 97565 TAAACCACAACAATTCTTCCACAACACCTCTCCAAAATACTCTCTTAGTTGTTAAGAGAG 97624 || ||||| ||| ||||||||||||||| | | ||| || | ||| ||||| | |||| Sbjct 19717768 TACGCCACAGCAACTCTTCCACAACACCTGTGC-AAACACACGCTTGGTTGTCAGCAGAG 19717710 Query 97625 GAAAATCCTTTTCTAAGCTGTATCTAGACTGCATTCCAAA 97664 |||| || | | | | |||| | |||||| ||||| Sbjct 19717709 GAAACTCATCTCTCAGGTTGTAGTGTGCCTGCATGCCAAA 19717670 >seq256 Length=2651488 Score = 82.4 bits (90), Expect = 5e-11 Identities = 118/164 (72%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 |||| || || ||||| | || | || | ||||| || ||||| ||||||||||| Sbjct 779446 GTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACCCCC 779387 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCA-TCACACACATA 97235 || ||||| || |||| || || || | ||| ||||| |||| ||| |||| |||||| Sbjct 779386 AGGCCCATGTCGCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCAC-CACATA 779328 Query 97236 AAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAA 97279 ||||| | | | || ||||| |||| |||||| | |||| Sbjct 779327 GAACTGGCAAAGGGCGTGGCAGGGAGGCAGCGCCATCTGAGGAA 779284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346757276283110