Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_001987.1
Length=108409
Score E
Sequences producing significant alignments: (Bits) Value
seq4 132 3e-26
seq256 82.4 5e-11
>seq4
Length=36583390
Score = 132 bits (146), Expect = 3e-26
Identities = 347/520 (67%), Gaps = 11/520 (2%)
Strand=Plus/Minus
Query 97149 ATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTG 97208
|||||| |||||| | ||||| ||||| || ||||| | |||| || || || | |||
Sbjct 19718182 ATAGCTGGCAATGGTGAAAGGTACCCCCAGGCCCATGTATCCTGACCTCTGCTACAGCTG 19718123
Query 97209 ACAGGAAAGCTTTCCAT-CACACACATAAAACTGACTCAATACATGACAGGGGGGCAACG 97267
|||| |||| | | ||| |||| | ||||| | | |||| ||||| | | ||
Sbjct 19718122 GCAGGTCAGCTCACTGTTCAC-CACAGAGAACTGGCAAAGGGCATGGCAGGGAGTTAGCG 19718064
Query 97268 CCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTCTATCGGTTGGGT 97327
|| | | |||| || |||| |||| ||||| | |||||||| | | ||||
Sbjct 19718063 CCGTCTGAGGAAGGCCTTGTGGATTCTAAGCGCACATGATGATTCTTCTGT-GTCAGGGT 19718005
Query 97328 TTGTGTGTATGGTATTAATTATCTGCTTTAATTGATCAACGCCTT---CTCCACCATAAT 97384
| || | || || | | | | || | | || || || |||| || ||||||
Sbjct 19718004 TGGTTTTGATTGTGTCAGTAACCTTTTGCAGCTGGTCTACTCCTTGACCTACACCATC-- 19717947
Query 97385 TGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTC 97444
|| || ||| ||| ||||||||| ||||||||||||| || || |||||||| || |
Sbjct 19717946 TGAA-TTCAGATCTTTATATTCTGCCTCAAAATGCCTCCACTGAAAGCCATAAACTGGGC 19717888
Query 97445 CAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCAT 97504
| ||||||||||||| |||| || || | || ||| || | || |||
Sbjct 19717887 CTGAATCTCCTTCTTCTCAGGTGAAGAATCCCAGGCTGTCCAAAAAGTCTCGGGACCCAC 19717828
Query 97505 TTGCATCCCAAATGTGCACACCAGATGCTGCAAGCTCTTTGCTGTCAGTAGATCCTCTGA 97564
| |||||||| || | ||| || | | || ||| | | || |||||| |||
Sbjct 19717827 TGGCATCCCAGATCTTCACTCCCTTGGAAGACAGTTCTCTAGCATTGGTGGATCCT-TGA 19717769
Query 97565 TAAACCACAACAATTCTTCCACAACACCTCTCCAAAATACTCTCTTAGTTGTTAAGAGAG 97624
|| ||||| ||| ||||||||||||||| | | ||| || | ||| ||||| | ||||
Sbjct 19717768 TACGCCACAGCAACTCTTCCACAACACCTGTGC-AAACACACGCTTGGTTGTCAGCAGAG 19717710
Query 97625 GAAAATCCTTTTCTAAGCTGTATCTAGACTGCATTCCAAA 97664
|||| || | | | | |||| | |||||| |||||
Sbjct 19717709 GAAACTCATCTCTCAGGTTGTAGTGTGCCTGCATGCCAAA 19717670
>seq256
Length=2651488
Score = 82.4 bits (90), Expect = 5e-11
Identities = 118/164 (72%), Gaps = 2/164 (1%)
Strand=Plus/Minus
Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176
|||| || || ||||| | || | || | ||||| || ||||| |||||||||||
Sbjct 779446 GTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACCCCC 779387
Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCA-TCACACACATA 97235
|| ||||| || |||| || || || | ||| ||||| |||| ||| |||| ||||||
Sbjct 779386 AGGCCCATGTCGCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCAC-CACATA 779328
Query 97236 AAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAA 97279
||||| | | | || ||||| |||| |||||| | ||||
Sbjct 779327 GAACTGGCAAAGGGCGTGGCAGGGAGGCAGCGCCATCTGAGGAA 779284
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 346757276283110
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |