Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq59 96.9 3e-15
seq24 91.5 1e-13
>seq59
Length=15706754
Score = 96.9 bits (106), Expect = 3e-15
Identities = 148/210 (70%), Gaps = 1/210 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||| ||| || || |||||||| ||||||||||| || | |||| | | |||||
Sbjct 4366158 CACCAGGTGCATGGTGGACTCTTTCTGAATGTTGTAGTCTAG-AGAGTGTGATTGTCCTC 4366216
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|||| ||| || | | ||||||||||| ||||| | |||||||||||||||
Sbjct 4366217 CAGCTCTTTGCCTGTAACAGTCAGACGCTGCTGGTCGGGGGAGATGCCCTCCTTGTCTTG 4366276
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
||||| ||| || | | || | |||| || ||||| ||| | || | || ||
Sbjct 4366277 GATTTTGGCTTTGACGTTCTTGATGATGTCACTGGGCTCGAACTCAAGAGTGATGGTCTT 4366336
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| || || | || ||||| ||||||||
Sbjct 4366337 GCCTGTGAGGATCTTCACAAAGATCTGCAT 4366366
>seq24
Length=24352400
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/196 (71%), Gaps = 3/196 (2%)
Strand=Plus/Plus
Query 118545 GACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCG 118604
|||| || || ||||| || || | |||||| |||||| |||||||| || ||
Sbjct 13198981 GACTGCTTCTGGATGTTATACTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCA 13199040
Query 118605 TAGATGAGACGCTGCTGATC--GGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAA 118662
| || ||| ||||||| || |||||| |||||||||||||| ||||| ||| |
Sbjct 13199041 CAAATCAGATGCTGCTGGTCAGGGGAGG-ATGCCCTCCTTGTCCTGGATTTTGGCTTTGA 13199099
Query 118663 CCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTT 118722
| | |||| |||||| || ||| ||||||| ||| | || ||||| |||| || |
Sbjct 13199100 CGTTCTCGATGGTGTCACTGGGCTCAACCTCGAAGGTGATGGTCTTGCCCATCAGGGTCT 13199159
Query 118723 TTACAAAAATCTGCAT 118738
| | || || |||||
Sbjct 13199160 TCATGAAGATTTGCAT 13199175
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433796968351516
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |