Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq59 96.9 3e-15 seq24 91.5 1e-13 >seq59 Length=15706754 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| || || |||||||| ||||||||||| || | |||| | | ||||| Sbjct 4366158 CACCAGGTGCATGGTGGACTCTTTCTGAATGTTGTAGTCTAG-AGAGTGTGATTGTCCTC 4366216 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||| ||| || | | ||||||||||| ||||| | ||||||||||||||| Sbjct 4366217 CAGCTCTTTGCCTGTAACAGTCAGACGCTGCTGGTCGGGGGAGATGCCCTCCTTGTCTTG 4366276 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | | || | |||| || ||||| ||| | || | || || Sbjct 4366277 GATTTTGGCTTTGACGTTCTTGATGATGTCACTGGGCTCGAACTCAAGAGTGATGGTCTT 4366336 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || | || ||||| |||||||| Sbjct 4366337 GCCTGTGAGGATCTTCACAAAGATCTGCAT 4366366 >seq24 Length=24352400 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/196 (71%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 118545 GACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCG 118604 |||| || || ||||| || || | |||||| |||||| |||||||| || || Sbjct 13198981 GACTGCTTCTGGATGTTATACTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCA 13199040 Query 118605 TAGATGAGACGCTGCTGATC--GGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAA 118662 | || ||| ||||||| || |||||| |||||||||||||| ||||| ||| | Sbjct 13199041 CAAATCAGATGCTGCTGGTCAGGGGAGG-ATGCCCTCCTTGTCCTGGATTTTGGCTTTGA 13199099 Query 118663 CCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTT 118722 | | |||| |||||| || ||| ||||||| ||| | || ||||| |||| || | Sbjct 13199100 CGTTCTCGATGGTGTCACTGGGCTCAACCTCGAAGGTGATGGTCTTGCCCATCAGGGTCT 13199159 Query 118723 TTACAAAAATCTGCAT 118738 | | || || ||||| Sbjct 13199160 TCATGAAGATTTGCAT 13199175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433796968351516