Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_002188.1
Length=288539
Score E
Sequences producing significant alignments: (Bits) Value
seq30 183 6e-41
seq154 100 5e-16
>seq30
Length=22861086
Score = 183 bits (202), Expect = 6e-41
Identities = 221/297 (74%), Gaps = 4/297 (1%)
Strand=Plus/Minus
Query 52033 ATTAAATGGTTTGCTGGAGGTCAGGCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCAT 52092
||||| ||| | || || || || |||||||||||||| ||||| ||||| |||||||||
Sbjct 6194332 ATTAAGTGGGTGGCAGGGGGACAAGCATTTTTTGGAGCCCAGCTGAATTCCTTTATCCAT 6194273
Query 52093 GTTATTATGTACACTTATTATGGTATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATC 52150
|| ||||||||| | || ||||| | | || | ||| || ||| ||||| |||||||
Sbjct 6194272 GTGATTATGTACTCATACTATGGGTTAACGGCATTTGG-CCCATGGATTCAG-AAGTATC 6194215
Query 52151 TATGGTGGAAACGTTATCTTACTATAATGCAGTTGGTACAGTTCCATATAGCTATAGGAC 52210
| |||||||||| || || || || ||||| |||| ||||||||| | | | ||||
Sbjct 6194214 TCTGGTGGAAACAGTACCTGACCATGTTGCAGCTGGTCCAGTTCCATGTGACCACTGGAC 6194155
Query 52211 ATACTGCTATGTCCATTTACATAGATTGCCCGTTTCCAAAATGGATACAGTGGTCAGTTA 52270
| || || ||||| | | | ||| |||| || || |||||||| || ||| | || |
Sbjct 6194154 ACACAGCATTGTCCCTGTGGAATGATCGCCCCTTCCCCAAATGGATGCACTGGGCTGTAA 6194095
Query 52271 TTATCTATTCTATTAGTTTCATATTACTGTTTGGTAACTTCTATTTTAGAACATACA 52327
| |||| | || || ||||||| || ||| ||||||||| | || | |||||||
Sbjct 6194094 CTGTCTACACCATGAGCTTCATATGCCTCTTTCGTAACTTCTGTGTTCGGACATACA 6194038
>seq154
Length=6958011
Score = 100 bits (110), Expect = 5e-16
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 51901 TGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATACTTAGG 51960
|||| ||||| | |||| ||||| | ||||| ||||| || || ||||| || || |||
Sbjct 5294378 TGGTGGTACTTTGTATCTAAAGGCGTTGAATATTTGGACACAGTTTTTTTTATCCTAAGG 5294437
Query 51961 AAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTTACTCTA 52020
|| ||| ||| || || ||| || || ||||||||||||| ||| |||||||| |
Sbjct 5294438 AAGAAAAATAACCAAGTCTCTTTCCTTCATGTATATCATCATTGTACAATGTTTACATTG 5294497
Query 52021 GGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055
| ||||| || ||||| ||| | || || || ||
Sbjct 5294498 TGGTGGATTGGAATTAAGTGGGTGGCAGGGGGACA 5294532
Score = 91.5 bits (100), Expect = 3e-13
Identities = 101/132 (77%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116
|||||||||||||| ||| | ||||| ||||||||||| ||||||||| || |||||
Sbjct 5295879 GCATTTTTTGGAGCCCAGATGAATTCCTTTATCCATGTGATTATGTACTTATACTATGGG 5295938
Query 52117 ATGGCCGCTTGTGG-TCCTATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175
| | || | ||| |||| ||||| |||||||| ||||||||||| || | || |
Sbjct 5295939 TTAACTGCATTTGGCTCCTGGATTCAG-AAGTATCTCTGGTGGAAACGGTACTTGACCGT 5295997
Query 52176 AATGCAGTTGGT 52187
||||| ||||
Sbjct 5295998 GTTGCAGCTGGT 5296009
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 923123832832920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |