Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq30 183 6e-41 seq154 100 5e-16 >seq30 Length=22861086 Score = 183 bits (202), Expect = 6e-41 Identities = 221/297 (74%), Gaps = 4/297 (1%) Strand=Plus/Minus Query 52033 ATTAAATGGTTTGCTGGAGGTCAGGCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCAT 52092 ||||| ||| | || || || || |||||||||||||| ||||| ||||| ||||||||| Sbjct 6194332 ATTAAGTGGGTGGCAGGGGGACAAGCATTTTTTGGAGCCCAGCTGAATTCCTTTATCCAT 6194273 Query 52093 GTTATTATGTACACTTATTATGGTATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATC 52150 || ||||||||| | || ||||| | | || | ||| || ||| ||||| ||||||| Sbjct 6194272 GTGATTATGTACTCATACTATGGGTTAACGGCATTTGG-CCCATGGATTCAG-AAGTATC 6194215 Query 52151 TATGGTGGAAACGTTATCTTACTATAATGCAGTTGGTACAGTTCCATATAGCTATAGGAC 52210 | |||||||||| || || || || ||||| |||| ||||||||| | | | |||| Sbjct 6194214 TCTGGTGGAAACAGTACCTGACCATGTTGCAGCTGGTCCAGTTCCATGTGACCACTGGAC 6194155 Query 52211 ATACTGCTATGTCCATTTACATAGATTGCCCGTTTCCAAAATGGATACAGTGGTCAGTTA 52270 | || || ||||| | | | ||| |||| || || |||||||| || ||| | || | Sbjct 6194154 ACACAGCATTGTCCCTGTGGAATGATCGCCCCTTCCCCAAATGGATGCACTGGGCTGTAA 6194095 Query 52271 TTATCTATTCTATTAGTTTCATATTACTGTTTGGTAACTTCTATTTTAGAACATACA 52327 | |||| | || || ||||||| || ||| ||||||||| | || | ||||||| Sbjct 6194094 CTGTCTACACCATGAGCTTCATATGCCTCTTTCGTAACTTCTGTGTTCGGACATACA 6194038 >seq154 Length=6958011 Score = 100 bits (110), Expect = 5e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 51901 TGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATACTTAGG 51960 |||| ||||| | |||| ||||| | ||||| ||||| || || ||||| || || ||| Sbjct 5294378 TGGTGGTACTTTGTATCTAAAGGCGTTGAATATTTGGACACAGTTTTTTTTATCCTAAGG 5294437 Query 51961 AAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTTACTCTA 52020 || ||| ||| || || ||| || || ||||||||||||| ||| |||||||| | Sbjct 5294438 AAGAAAAATAACCAAGTCTCTTTCCTTCATGTATATCATCATTGTACAATGTTTACATTG 5294497 Query 52021 GGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 | ||||| || ||||| ||| | || || || || Sbjct 5294498 TGGTGGATTGGAATTAAGTGGGTGGCAGGGGGACA 5294532 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||||||||| ||| | ||||| ||||||||||| ||||||||| || ||||| Sbjct 5295879 GCATTTTTTGGAGCCCAGATGAATTCCTTTATCCATGTGATTATGTACTTATACTATGGG 5295938 Query 52117 ATGGCCGCTTGTGG-TCCTATGTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 | | || | ||| |||| ||||| |||||||| ||||||||||| || | || | Sbjct 5295939 TTAACTGCATTTGGCTCCTGGATTCAG-AAGTATCTCTGGTGGAAACGGTACTTGACCGT 5295997 Query 52176 AATGCAGTTGGT 52187 ||||| |||| Sbjct 5295998 GTTGCAGCTGGT 5296009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923123832832920