Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq40 102 9e-17 seq131 100 3e-16 seq180 98.7 1e-15 seq145 98.7 1e-15 seq81 95.1 1e-14 seq102 86.0 7e-12 seq57 86.0 7e-12 seq33 86.0 7e-12 seq24 84.2 3e-11 seq197 82.4 9e-11 >seq40 Length=19935044 Score = 102 bits (112), Expect = 9e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 11338544 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 11338485 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 11338484 TATACTAACGAGGA 11338471 >seq131 Length=8015323 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 2530647 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2530706 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 2530707 TACTAACGAGGAT 2530719 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| | | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 2533186 TCTCCCCCTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 2533245 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 2533246 ATACTAACGAGGA 2533258 >seq180 Length=5441683 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 419404 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 419345 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 419344 TACTAACGAGGA 419333 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1723355 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 1723414 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1723415 TACTAACGAGGA 1723426 >seq145 Length=7231261 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 29889 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 29830 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 29829 TACTAACGAGGA 29818 >seq81 Length=12574705 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 8496040 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 8495981 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 8495980 TACTAACGAGGA 8495969 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||||||||||| Sbjct 11626559 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 11626500 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 11626499 TACTAACGAGGA 11626488 >seq102 Length=10627846 Score = 86.0 bits (94), Expect = 7e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||| | ||||||||||||||||||||| |||||||||||||||||| | || Sbjct 4554973 GGGAATCGAACTCAGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTAACAAG 4555032 Query 60136 GA 60137 || Sbjct 4555033 GA 4555034 >seq57 Length=15922913 Score = 86.0 bits (94), Expect = 7e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 |||||||||||||| ||||||| |||||||||| | |||||||||||||||||| |||| Sbjct 7043197 GGGAATCGAACCCTAGTCTCCCACGTGACAGGCAGGGATACTCACCACTATACTAACGAG 7043138 Query 60136 GA 60137 || Sbjct 7043137 GA 7043136 >seq33 Length=21447058 Score = 86.0 bits (94), Expect = 7e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||||||||||||| ||||||||| | |||||||||||||||||| ||| Sbjct 1199205 GGGAATCGAACCCTGGTCTCCCGGGTGACAGGCAGGGATACTCACCACTATACTAATGAG 1199264 Query 60136 GA 60137 || Sbjct 1199265 GA 1199266 >seq24 Length=24352400 Score = 84.2 bits (92), Expect = 3e-11 Identities = 135/193 (70%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 || ||| || || || || || | ||||| || | || || ||||| || || || | Sbjct 13198983 CTGCTTCTGGATGTTATACTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCACA 13199042 Query 43052 TATGAGTCGCTGCTGGTCGGCCG-GCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG 43110 || || |||||||||| | | | | || |||||||||| |||||| ||||| Sbjct 13199043 AATCAGATGCTGCTGGTCAGGGGAGGATGCCCTCCTTGTCCTGGATTTTGGCTTTGACGT 13199102 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 || | | ||||| || | || || |||| |||||||| |||||| | || ||||| | Sbjct 13199103 TCTCGATGGTGTCACTGGGCTCAACCTCGAAGGTGATGGTCTTGCCCATCAGGGTCTTCA 13199162 Query 43171 CAAAGATTTGCAT 43183 ||||||||||| Sbjct 13199163 TGAAGATTTGCAT 13199175 >seq197 Length=4675665 Score = 82.4 bits (90), Expect = 9e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 |||||| |||||||||||||| ||||||||||||| ||||| |||||||||||| ||| Sbjct 3279029 GGGAATAGAACCCTGGTCTCCTGCGTGACAGGCGGGGATACTTACCACTATACTAATGAG 3279088 Query 60136 GAT 60138 ||| Sbjct 3279089 GAT 3279091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571772404966440