Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq87 264 1e-65
seq9 102 8e-17
seq23 98.7 9e-16
>seq87
Length=11743621
Score = 264 bits (292), Expect = 1e-65
Identities = 571/839 (68%), Gaps = 14/839 (2%)
Strand=Plus/Plus
Query 15959 ACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAA 16018
|||||||| || ||||| || ||| | ||||| ||||||||| |||||||| |||||
Sbjct 8842170 ACTCTCTTCTCGAAGAAGTTAGTTCTCCCTTCCTGTGAAATATTCTCCATAAAGTCAAAT 8842229
Query 16019 GGATTTTTTGAAC--AATAGTATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCA 16076
||||||| | | |||| || | | |||| ||||| || || ||| || || |
Sbjct 8842230 GGATTTTCTACTCTGAATACC--TTGTTAAAACCCAGTTCCAGCATTAGTCTCTCTGCTA 8842287
Query 16077 CAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTG 16136
||| | || ||||| ||||||||| || ||||||| || | || ||| | | |
Sbjct 8842288 CAACG-CAATGTACTGCTTCATTAAAGTGCAATTCATTCTGATAAGCTTCACATGCAAGG 8842346
Query 16137 CTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACAC 16196
| || || | | | | |||||| |||| || | ||| ||||| ||| ||||| | |
Sbjct 8842347 CCTCAGTAAGGAGCTCCTATTCTATCCTAACAGCATTAATAATTATTTCTTTTACT-CTC 8842405
Query 16197 TATTT-AACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAAT 16255
| | || || || || |||||||| ||| ||| || | ||| ||||| || ||
Sbjct 8842406 TGCTCCAAAGGTTTGTGTAGCAAGTGTTTGAACGCTATGCAGGTAAAGTCACAGTGTAAA 8842465
Query 16256 CCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTT 16315
| || || || || || || || || ||| |||| || || ||||||| |||||||||
Sbjct 8842466 CTCTCATCTCTGCTAATGAATTCATTGGAACATGTGAGGCCAGGCATTAATCCTCGTTTC 8842525
Query 16316 TTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAAT 16375
|| | || ||||| | ||||| |||||||||||||| || ||||| | || ||||||
Sbjct 8842526 TTGAGTCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTATTGGGGCAAAG 8842585
Query 16376 GCAACCAATCGCTCACCGTACGT-TCTAtttttactttctatccattttttagcccaatt 16434
|| || | || ||| || || || |||| | | ||||| | |||||||
Sbjct 8842586 GCTACATCACACTTACCATAGGTAGCTTCTTTTTC-CCCGATCCAATGCAAGGCCCAATC 8842644
Query 16435 tgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTT 16494
||| || | || ||||| ||| | || || ||||| || | | | | |||| ||
Sbjct 8842645 TGCCTTCTTCTTTACACAAGGCAT-TGTTCAATGGCATTGAAGAGAAACTCCCTTTCCTT 8842703
Query 16495 GCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCAT 16554
| |||| ||| ||||| || | || | | | |||||||| ||||| || || |||||
Sbjct 8842704 GGAATCTTTAATGTAAGTGTCAGTAAGGAGATTGTACATTTCAGAATGTATGTTTTCCAT 8842763
Query 16555 TGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTT-CAGAGTAAAACC 16613
||| || || || ||||| | || | ||||| | || || |||| | |||| |
Sbjct 8842764 TGCAATTTGGAAGCCATAGAGACAGCAGGCTTCTGTAATCTGAACTTGTTGGCTAAATCG 8842823
Query 16614 TTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTT 16673
| || |||||||| || | ||| |||||||| |||||||| || || || | |||
Sbjct 8842824 CACCAGC-AAGTTTTCATTCATTATGCCATCGCTTGCTGCAAAGAAAGCCAGAACATGTG 8842882
Query 16674 TAATAAAAtttttttCGTTA-TCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAA 16732
|||||| | |||| ||| || | | || ||||| || || || || | |
Sbjct 8842883 ATGTAAAATATCTTTCTTTAGGCTTCAGGGCTT-CCCAGTGCTGAATGTCCTTGGAAAGA 8842941
Query 16733 TCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTC 16791
|| | ||| || |||||||||| |||| |||| || |||||||| | ||| || ||
Sbjct 8842942 TCCAGCTCCTCAGCAGTCCAAAAGGAAGGCTCAGCTTTCTTATACATCTGCCAAATATC 8843000
>seq9
Length=34412642
Score = 102 bits (112), Expect = 8e-17
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944
|| ||||||| ||| | | || ||||||||| | | | | |||||||| |
Sbjct 15817994 TTCAAAAATCTGCATCCAAGGTGAAGACATTATCTGTGGTTTCCGCCATAACTGCAAAAC 15817935
Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004
||||| || ||||| |||||||||||||||||||| |||||||| ||||| ||||
Sbjct 15817934 GCTGATACTCTGAAACTCGTTTTTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTT 15817875
Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028
||||||||||||| ||||||| ||
Sbjct 15817874 CCATAAAATCAAAGGGATTTTCTG 15817851
>seq23
Length=24341844
Score = 98.7 bits (108), Expect = 9e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318
|| || || || || | || || |||||||| || || ||||||| ||||||||| ||
Sbjct 8996045 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGCCCAGGCATTAATCCTCGTTTCTTG 8996104
Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378
| ||| ||||| | ||||| |||||||||||||| || ||||| || || ||||| ||
Sbjct 8996105 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACGGCTGCAAAGGCT 8996164
Query 16379 ACCAATCGCTCACC 16392
|| | ||||| ||
Sbjct 8996165 ACAACACGCTCTCC 8996178
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462475444207800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |