Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq87 264 1e-65 seq9 102 8e-17 seq23 98.7 9e-16 >seq87 Length=11743621 Score = 264 bits (292), Expect = 1e-65 Identities = 571/839 (68%), Gaps = 14/839 (2%) Strand=Plus/Plus Query 15959 ACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAA 16018 |||||||| || ||||| || ||| | ||||| ||||||||| |||||||| ||||| Sbjct 8842170 ACTCTCTTCTCGAAGAAGTTAGTTCTCCCTTCCTGTGAAATATTCTCCATAAAGTCAAAT 8842229 Query 16019 GGATTTTTTGAAC--AATAGTATTTATCGCATCCCAATTCCAACAATAATCTATCCGCCA 16076 ||||||| | | |||| || | | |||| ||||| || || ||| || || | Sbjct 8842230 GGATTTTCTACTCTGAATACC--TTGTTAAAACCCAGTTCCAGCATTAGTCTCTCTGCTA 8842287 Query 16077 CAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTG 16136 ||| | || ||||| ||||||||| || ||||||| || | || ||| | | | Sbjct 8842288 CAACG-CAATGTACTGCTTCATTAAAGTGCAATTCATTCTGATAAGCTTCACATGCAAGG 8842346 Query 16137 CTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACAC 16196 | || || | | | | |||||| |||| || | ||| ||||| ||| ||||| | | Sbjct 8842347 CCTCAGTAAGGAGCTCCTATTCTATCCTAACAGCATTAATAATTATTTCTTTTACT-CTC 8842405 Query 16197 TATTT-AACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAAT 16255 | | || || || || |||||||| ||| ||| || | ||| ||||| || || Sbjct 8842406 TGCTCCAAAGGTTTGTGTAGCAAGTGTTTGAACGCTATGCAGGTAAAGTCACAGTGTAAA 8842465 Query 16256 CCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTT 16315 | || || || || || || || || ||| |||| || || ||||||| ||||||||| Sbjct 8842466 CTCTCATCTCTGCTAATGAATTCATTGGAACATGTGAGGCCAGGCATTAATCCTCGTTTC 8842525 Query 16316 TTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAAT 16375 || | || ||||| | ||||| |||||||||||||| || ||||| | || |||||| Sbjct 8842526 TTGAGTCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTATTGGGGCAAAG 8842585 Query 16376 GCAACCAATCGCTCACCGTACGT-TCTAtttttactttctatccattttttagcccaatt 16434 || || | || ||| || || || |||| | | ||||| | ||||||| Sbjct 8842586 GCTACATCACACTTACCATAGGTAGCTTCTTTTTC-CCCGATCCAATGCAAGGCCCAATC 8842644 Query 16435 tgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTT 16494 ||| || | || ||||| ||| | || || ||||| || | | | | |||| || Sbjct 8842645 TGCCTTCTTCTTTACACAAGGCAT-TGTTCAATGGCATTGAAGAGAAACTCCCTTTCCTT 8842703 Query 16495 GCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCAT 16554 | |||| ||| ||||| || | || | | | |||||||| ||||| || || ||||| Sbjct 8842704 GGAATCTTTAATGTAAGTGTCAGTAAGGAGATTGTACATTTCAGAATGTATGTTTTCCAT 8842763 Query 16555 TGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTT-CAGAGTAAAACC 16613 ||| || || || ||||| | || | ||||| | || || |||| | |||| | Sbjct 8842764 TGCAATTTGGAAGCCATAGAGACAGCAGGCTTCTGTAATCTGAACTTGTTGGCTAAATCG 8842823 Query 16614 TTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTT 16673 | || |||||||| || | ||| |||||||| |||||||| || || || | ||| Sbjct 8842824 CACCAGC-AAGTTTTCATTCATTATGCCATCGCTTGCTGCAAAGAAAGCCAGAACATGTG 8842882 Query 16674 TAATAAAAtttttttCGTTA-TCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAA 16732 |||||| | |||| ||| || | | || ||||| || || || || | | Sbjct 8842883 ATGTAAAATATCTTTCTTTAGGCTTCAGGGCTT-CCCAGTGCTGAATGTCCTTGGAAAGA 8842941 Query 16733 TCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTC 16791 || | ||| || |||||||||| |||| |||| || |||||||| | ||| || || Sbjct 8842942 TCCAGCTCCTCAGCAGTCCAAAAGGAAGGCTCAGCTTTCTTATACATCTGCCAAATATC 8843000 >seq9 Length=34412642 Score = 102 bits (112), Expect = 8e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 || ||||||| ||| | | || ||||||||| | | | | |||||||| | Sbjct 15817994 TTCAAAAATCTGCATCCAAGGTGAAGACATTATCTGTGGTTTCCGCCATAACTGCAAAAC 15817935 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| |||||||||||||||||||| |||||||| ||||| |||| Sbjct 15817934 GCTGATACTCTGAAACTCGTTTTTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTT 15817875 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||| ||||||| || Sbjct 15817874 CCATAAAATCAAAGGGATTTTCTG 15817851 >seq23 Length=24341844 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || |||||||| || || ||||||| ||||||||| || Sbjct 8996045 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGCCCAGGCATTAATCCTCGTTTCTTG 8996104 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| |||||||||||||| || ||||| || || ||||| || Sbjct 8996105 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACGGCTGCAAAGGCT 8996164 Query 16379 ACCAATCGCTCACC 16392 || | ||||| || Sbjct 8996165 ACAACACGCTCTCC 8996178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462475444207800