Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq30 1669 0.0 seq107 152 4e-32 >seq30 Length=22861086 Score = 1669 bits (1850), Expect = 0.0 Identities = 1359/1646 (83%), Gaps = 34/1646 (2%) Strand=Plus/Plus Query 107136 AGGGTCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCA 107195 ||| || ||||| || || |||||||||||||||||| || ||| | || ||| ||| Sbjct 5274531 AGGCTCCTAGGCGGGTTTTTACTGAGGATATTTGTCTAGAGGAGAAACACATTTTTGCCA 5274590 Query 107196 TCACTCTGGAGTTGAACTTGATGT--------------TCTGGATTAGTTTGTAATTAAA 107241 || | |||| ||||||||||||| || || ||||||||||||| || Sbjct 5274591 TCCATTTGGAATTGAACTTGATGTGCCTGTGACTACGTTCAGGTTTAGTTTGTAATTGAA 5274650 Query 107242 GGCATTTTGTTCTGTCCAAGGATC---TCCTCCTCCACCTTGCCTGTGCCCAAACTCT-C 107297 |||||||||||||||||||||| ||||||||| |||| |||||||| | ||||| | Sbjct 5274651 AGCATTTTGTTCTGTCCAAGGATTCCATCCTCCTCCTCCTTCCCTGTGCCTAGACTCTGC 5274710 Query 107298 CTGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCAT 107357 ||| ||||| || ||||||||| |||||||||||||||| |||| | || | | Sbjct 5274711 CTGGTCTCC-ATTGGATGAAGATGTTATGGTGGAAGAAGAAGCTCTGCCAGCAACGTTAC 5274769 Query 107358 CTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGG 107417 || |||||||||||||||||||||||||||||| || || ||||||||||||| ||||| Sbjct 5274770 CTCTGGGCCCTGGGCTGCTATATGCTGCTGGCCTTTATTGCTCTGAGACTTTCTCTCAGA 5274829 Query 107418 TTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGT 107477 || || ||||| | || | |||||||||||||||||||||| || || | || |||| Sbjct 5274830 TTGAAGTGTGACTTTGAGCACCTGGATCTGGAGTCCAGGGACTTTCAAAGCCGGCGCTGT 5274889 Query 107478 AGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGG 107537 ||||| || |||||||| |||||||||||| ||||||| |||||||||||||| ||| Sbjct 5274890 AGGGATATCTTGTACAAGTCCCTGAAGCTGCCCGCAAAGAAGTCCATCAACTGTTCCGGG 5274949 Query 107538 ATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAG 107597 |||| |||||| |||||||||||||| | ||||| |||||| ||||||||| ||| Sbjct 5274950 GTCACTCGAGGGAACCAGGAAGCAGTGATTCAGGCTCTCCTAAGCAACCTGGAGACCAAG 5275009 Query 107598 AAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGC 107657 || ||| || |||| |||| | |||| | ||||||||| | ||||| ||||||||| | Sbjct 5275010 AACAAGAGGGAGCCTTTCACAGACACCCACTACCTCAACCTGACCAGGAACTGTGAGCAC 5275069 Query 107658 TTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCC 107717 || |||||||| |||||||||||| | ||||||||||| ||| ||||| ||||||||||| Sbjct 5275070 TTTAAGGCCCAGAGGAAGTTCATAGACTTCCCACTGAGCAAACAAGAGTTAGACTTCCCC 5275129 Query 107718 ATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCC 107777 || || ||||| |||||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 5275130 ATCGCATACTCTATGGTGGTCCATGAGAAGATTGAAAATTTTGAGAGGCTGCTGCGAGCT 5275189 Query 107778 GTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTC 107837 ||||||| ||| |||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 5275190 GTGTATGTCCCACAGAACATATACTGTGTCCACGTGGATGAGAAGTCCCCAGAAACTTTC 5275249 Query 107838 AAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTG 107897 |||||||| |||||||| |||||||| |||||||| ||||||||||||||||||||| || Sbjct 5275250 AAAGAGGCAGTCAAGGCAATTATTTCATGCTTCCCAAATGTCTTCATGGCCAGTAAGCTG 5275309 Query 107898 GTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGAC 107957 || | |||||||||||| || |||||||| ||||| |||||||||||||| ||||||||| Sbjct 5275310 GTTCGGGTGGTTTATGCATCTTGGTCCAGGGTGCAGGCTGACCTGAACTGCATGGAAGAC 5275369 Query 107958 TTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCC 108017 |||||||||||| | ||||||||||| ||||| ||||||||||| ||||||||||| || Sbjct 5275370 TTGCTCCAGAGCCCCGTGCCATGGAAATACTTCCTGAATACATGTGGGACAGACTTTCCT 5275429 Query 108018 ATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATG 108077 |||||||| ||||| |||||||||| ||| || |||||| |||| || |||||||||||| Sbjct 5275430 ATAAAGACAAATGCTGAGATGGTCCAGGCTCTAAAGATGCTGAATGGGAAGAACAGTATG 5275489 Query 108078 GAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACA 108137 ||||| ||| ||||| |||||| ||||||||| |||||||| || | |||||| ||||| Sbjct 5275490 GAGTCAGAGATACCTACTGAGTACAAAAAAAACCGCTGGAAGTATCATTATGAGATGACA 5275549 Query 108138 GACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTC 108197 ||||||||| || || ||| ||| ||||| ||||||||||||||||||||| |||||| Sbjct 5275550 GACACACTGCACGTAACAAGCCAGAAGAAGGGCCCTCCCCCTGATAATTTACCTATGTTC 5275609 Query 108198 ACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCT 108257 ||||||||||||||| ||||||| ||||||| ||| |||||||||| ||||| || || Sbjct 5275610 ACAGGGAATGCCTATATTGTGGCTTCTCGAGACTTCATCCAACATGTTTTAGAGAATCCC 5275669 Query 108258 AAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGG 108317 |||||||||| |||| |||||||||| |||||||||||||||||||| |||||||||||| Sbjct 5275670 AAATCCCAAAAACTGATTGAATGGGTAAAAGACACCTATAGCCCCGATGAACACCTCTGG 5275729 Query 108318 GCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCAC 108377 ||||| ||||||||||| || |||||||||||||||||||| | ||||| ||||||| || Sbjct 5275730 GCCACACTTCAGCGTGCACCATGGATGCCTGGCTCTGTTCCCAACCACCGCAAGTATGAC 5275789 Query 108378 ATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTC 108437 ||||| ||| || ||||||| || ||||| |||||||||||| ||| |||||||| | Sbjct 5275790 ATCTCGGACTTGGCTGCCATTGCTAGGCTAGTCAAGTGGCAGGGCCATGAGGGAGACATA 5275849 Query 108438 AGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTAC 108497 ||| |||||| |||||| |||| ||| |||||||||| | | |||| | || ||||| Sbjct 5275850 AGCGCGGGGGCCCCTTATCCACCTTGCACTGGAATCCACCAGCGGGCTGTTTGTATTTAT 5275909 Query 108498 GGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||||| || |||||| ||||| | || |||||||||||||| |||| |||||||||||| Sbjct 5275910 GGGGCTGGAGACCTGCACTGGTTGCTTCAGAACCATCACCTGCTGGCCAACAAGTTTGAC 5275969 Query 108558 CCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATC 108617 |||| |||||||| || | ||| |||||||||||||||||| |||| ||||||||||| Sbjct 5275970 CCGAAAGTGGATGACAATGCCCTCCAGTGCTTAGAAGAGTACTTACGCTATAAGGCCATC 5276029 Query 108618 TATGGGACTGAACTTTGAGCTGCACTGTGGG-----------CCAG-GGA--CTGTGCCA 108663 || ||||||||||| |||| |||| |||| || | ||| ||||| | Sbjct 5276030 TACGGGACTGAACTCTGAGACACACTCTGGGAGAATTTGCTACCTGTGGATCATGTGCAA 5276089 Query 108664 ACATGCCCAGGGCGTACTGGTACTGTGT-GGGGTGGGGGACGAGGGCTGTGGAATCCATG 108722 |||||| ||| || | |||| || ||| |||||||| | | |||||| ||||||| || Sbjct 5276090 ACATGCTCAGAGCTTGCTGGGACAATGTGGGGGTGGGAGGCCAGGGCTCTGGAATCTCTG 5276149 Query 108723 GCATCCCCCAGGGTCAGAGGGCTGCT 108748 | | ||| ||||| |||| |||||| Sbjct 5276150 GGGTGCCCTAGGGTAAGAGTGCTGCT 5276175 >seq107 Length=10122068 Score = 152 bits (168), Expect = 4e-32 Identities = 571/884 (65%), Gaps = 25/884 (3%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || || ||||||||| | || || || ||||| || || || || || || | || Sbjct 4553281 CCCCTTAGCAAAGAAGAGGTGGAGTTTCCAATTGCATATTCTATAGTAGTTCACCACAAA 4553222 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| | || |||| ||| | ||| | || |||||||| | || || | Sbjct 4553221 ATTGAAATGCTCGACAGGCTCCTGAGGGCCATCTACATGCCTCAGAATTTCTATTGCATT 4553162 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 |||||||| || || || | || ||| || || | || ||| |||||| Sbjct 4553161 CACGTGGACAAAAAATCTGAGGATTCCTTTTTAGATGCAGTGATGGGCATCGCGTCCTGC 4553102 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| || |||||| ||||||| || ||| | ||||| ||||| || ||| | | Sbjct 4553101 TTCAGTAACGTCTTCGTGGCCAGCCAGCTGGAGCGTGTGGTCTATGCTTCATGGAGCCGT 4553042 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 || || || ||||| ||||| ||| | ||| | || |||| | ||||| ||||||| Sbjct 4553041 GTCCAGGCAGACCTCAACTGCATGAAGGACCT-CTACAGAA-TGAGTGCAGACTGGAAGT 4552984 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 |||| | ||| || || | || || || || || ||||| || || ||| | Sbjct 4552983 ACTTGATAAATCTTTGTGGTATGGATTTTCCTATTAAAACCAACCTGGAAATTGTCAGGC 4552924 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaa 108105 |||||| || | |||| | ||||| | || ||||| | | || ||| || Sbjct 4552923 AGCTCAAGTCATTAATGGGTGAAAACAGCCTCGAAACTGAGAAAATGCC--AGCCCACAA 4552866 Query 108106 a--aaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGAT 108163 | | | | |||||| | || || || || | | | | | || | || | Sbjct 4552865 AGCAGAAAGGTGGAAAAAGCGTTACGAAGTCATTAATGG---GAAGCTAACAAACACGGG 4552809 Query 108164 GAAGGAC------CCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGT 108217 | ||| ||||| ||| | | ||| |||| |||| | |||||||||||| Sbjct 4552808 GGCAGACAAAGTGCCTCCTCCTCTTGAAACACCTGTGTTTTCAGGCAGTGCCTATTTTGT 4552749 Query 108218 GGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGA 108277 || | ||| | || | || |||| || ||| ||||| | | || Sbjct 4552748 GGTCAGTCGGAAATACGTGGGTTACGTGCTAGAGAATGAAAAAATCCAAAACTTTATAGA 4552689 Query 108278 ATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCC 108337 |||| ||||||||||| ||||| || ||| | |||||||||||| |||| | | || Sbjct 4552688 GTGGGCAAAAGACACCTACAGCCCTGATGAATATCTCTGGGCCACCATTCAAAG-GATCG 4552630 Query 108338 GTGGA-TGCCTGGCTCTGT-TCCT--AGCCACCCCAAGTATCACATCTCAGACATGACTG 108393 || | | |||||| | | |||| ||||| ||||| |||| || |||||| | Sbjct 4552629 CTGAAGTCCCTGGCGCATTCTCCTCAAGCCAT---AAGTACGACATGTCTGACATGCAGG 4552573 Query 108394 CCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTT 108453 | | || || | ||||| ||| | ||| | || || ||||| || ||| || || | Sbjct 4552572 CGGTGGCAAGATTTGTCAAATGGTACTACTATGAAGGCGATGTTTCCAAGGGCGCCCCCT 4552513 Query 108454 ATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGT 108513 | | |||||| ||| |||| | | || ||||| ||| ||||||||||||| || Sbjct 4552512 ACCCGCCCTGCAGTGGTGTCCACGTGCGCTCCGTCTGCGTTTTCGGGGCCGGGGACTTGA 4552453 Query 108514 ACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||||||| || || || || ||| | || || |||||||||||| Sbjct 4552452 ACTGGATGCTGCACAAGCACCACTTGTTTGCCAACAAGTTTGAC 4552409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348241961862102