Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq30 1669 0.0
seq107 152 4e-32
>seq30
Length=22861086
Score = 1669 bits (1850), Expect = 0.0
Identities = 1359/1646 (83%), Gaps = 34/1646 (2%)
Strand=Plus/Plus
Query 107136 AGGGTCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCA 107195
||| || ||||| || || |||||||||||||||||| || ||| | || ||| |||
Sbjct 5274531 AGGCTCCTAGGCGGGTTTTTACTGAGGATATTTGTCTAGAGGAGAAACACATTTTTGCCA 5274590
Query 107196 TCACTCTGGAGTTGAACTTGATGT--------------TCTGGATTAGTTTGTAATTAAA 107241
|| | |||| ||||||||||||| || || ||||||||||||| ||
Sbjct 5274591 TCCATTTGGAATTGAACTTGATGTGCCTGTGACTACGTTCAGGTTTAGTTTGTAATTGAA 5274650
Query 107242 GGCATTTTGTTCTGTCCAAGGATC---TCCTCCTCCACCTTGCCTGTGCCCAAACTCT-C 107297
|||||||||||||||||||||| ||||||||| |||| |||||||| | ||||| |
Sbjct 5274651 AGCATTTTGTTCTGTCCAAGGATTCCATCCTCCTCCTCCTTCCCTGTGCCTAGACTCTGC 5274710
Query 107298 CTGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCAT 107357
||| ||||| || ||||||||| |||||||||||||||| |||| | || | |
Sbjct 5274711 CTGGTCTCC-ATTGGATGAAGATGTTATGGTGGAAGAAGAAGCTCTGCCAGCAACGTTAC 5274769
Query 107358 CTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGG 107417
|| |||||||||||||||||||||||||||||| || || ||||||||||||| |||||
Sbjct 5274770 CTCTGGGCCCTGGGCTGCTATATGCTGCTGGCCTTTATTGCTCTGAGACTTTCTCTCAGA 5274829
Query 107418 TTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGT 107477
|| || ||||| | || | |||||||||||||||||||||| || || | || ||||
Sbjct 5274830 TTGAAGTGTGACTTTGAGCACCTGGATCTGGAGTCCAGGGACTTTCAAAGCCGGCGCTGT 5274889
Query 107478 AGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGG 107537
||||| || |||||||| |||||||||||| ||||||| |||||||||||||| |||
Sbjct 5274890 AGGGATATCTTGTACAAGTCCCTGAAGCTGCCCGCAAAGAAGTCCATCAACTGTTCCGGG 5274949
Query 107538 ATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAG 107597
|||| |||||| |||||||||||||| | ||||| |||||| ||||||||| |||
Sbjct 5274950 GTCACTCGAGGGAACCAGGAAGCAGTGATTCAGGCTCTCCTAAGCAACCTGGAGACCAAG 5275009
Query 107598 AAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGC 107657
|| ||| || |||| |||| | |||| | ||||||||| | ||||| ||||||||| |
Sbjct 5275010 AACAAGAGGGAGCCTTTCACAGACACCCACTACCTCAACCTGACCAGGAACTGTGAGCAC 5275069
Query 107658 TTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCC 107717
|| |||||||| |||||||||||| | ||||||||||| ||| ||||| |||||||||||
Sbjct 5275070 TTTAAGGCCCAGAGGAAGTTCATAGACTTCCCACTGAGCAAACAAGAGTTAGACTTCCCC 5275129
Query 107718 ATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCC 107777
|| || ||||| |||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 5275130 ATCGCATACTCTATGGTGGTCCATGAGAAGATTGAAAATTTTGAGAGGCTGCTGCGAGCT 5275189
Query 107778 GTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTC 107837
||||||| ||| |||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 5275190 GTGTATGTCCCACAGAACATATACTGTGTCCACGTGGATGAGAAGTCCCCAGAAACTTTC 5275249
Query 107838 AAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTG 107897
|||||||| |||||||| |||||||| |||||||| ||||||||||||||||||||| ||
Sbjct 5275250 AAAGAGGCAGTCAAGGCAATTATTTCATGCTTCCCAAATGTCTTCATGGCCAGTAAGCTG 5275309
Query 107898 GTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGAC 107957
|| | |||||||||||| || |||||||| ||||| |||||||||||||| |||||||||
Sbjct 5275310 GTTCGGGTGGTTTATGCATCTTGGTCCAGGGTGCAGGCTGACCTGAACTGCATGGAAGAC 5275369
Query 107958 TTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCC 108017
|||||||||||| | ||||||||||| ||||| ||||||||||| ||||||||||| ||
Sbjct 5275370 TTGCTCCAGAGCCCCGTGCCATGGAAATACTTCCTGAATACATGTGGGACAGACTTTCCT 5275429
Query 108018 ATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATG 108077
|||||||| ||||| |||||||||| ||| || |||||| |||| || ||||||||||||
Sbjct 5275430 ATAAAGACAAATGCTGAGATGGTCCAGGCTCTAAAGATGCTGAATGGGAAGAACAGTATG 5275489
Query 108078 GAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACA 108137
||||| ||| ||||| |||||| ||||||||| |||||||| || | |||||| |||||
Sbjct 5275490 GAGTCAGAGATACCTACTGAGTACAAAAAAAACCGCTGGAAGTATCATTATGAGATGACA 5275549
Query 108138 GACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTC 108197
||||||||| || || ||| ||| ||||| ||||||||||||||||||||| ||||||
Sbjct 5275550 GACACACTGCACGTAACAAGCCAGAAGAAGGGCCCTCCCCCTGATAATTTACCTATGTTC 5275609
Query 108198 ACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCT 108257
||||||||||||||| ||||||| ||||||| ||| |||||||||| ||||| || ||
Sbjct 5275610 ACAGGGAATGCCTATATTGTGGCTTCTCGAGACTTCATCCAACATGTTTTAGAGAATCCC 5275669
Query 108258 AAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGG 108317
|||||||||| |||| |||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 5275670 AAATCCCAAAAACTGATTGAATGGGTAAAAGACACCTATAGCCCCGATGAACACCTCTGG 5275729
Query 108318 GCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCAC 108377
||||| ||||||||||| || |||||||||||||||||||| | ||||| ||||||| ||
Sbjct 5275730 GCCACACTTCAGCGTGCACCATGGATGCCTGGCTCTGTTCCCAACCACCGCAAGTATGAC 5275789
Query 108378 ATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTC 108437
||||| ||| || ||||||| || ||||| |||||||||||| ||| |||||||| |
Sbjct 5275790 ATCTCGGACTTGGCTGCCATTGCTAGGCTAGTCAAGTGGCAGGGCCATGAGGGAGACATA 5275849
Query 108438 AGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTAC 108497
||| |||||| |||||| |||| ||| |||||||||| | | |||| | || |||||
Sbjct 5275850 AGCGCGGGGGCCCCTTATCCACCTTGCACTGGAATCCACCAGCGGGCTGTTTGTATTTAT 5275909
Query 108498 GGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557
||||| || |||||| ||||| | || |||||||||||||| |||| ||||||||||||
Sbjct 5275910 GGGGCTGGAGACCTGCACTGGTTGCTTCAGAACCATCACCTGCTGGCCAACAAGTTTGAC 5275969
Query 108558 CCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATC 108617
|||| |||||||| || | ||| |||||||||||||||||| |||| |||||||||||
Sbjct 5275970 CCGAAAGTGGATGACAATGCCCTCCAGTGCTTAGAAGAGTACTTACGCTATAAGGCCATC 5276029
Query 108618 TATGGGACTGAACTTTGAGCTGCACTGTGGG-----------CCAG-GGA--CTGTGCCA 108663
|| ||||||||||| |||| |||| |||| || | ||| ||||| |
Sbjct 5276030 TACGGGACTGAACTCTGAGACACACTCTGGGAGAATTTGCTACCTGTGGATCATGTGCAA 5276089
Query 108664 ACATGCCCAGGGCGTACTGGTACTGTGT-GGGGTGGGGGACGAGGGCTGTGGAATCCATG 108722
|||||| ||| || | |||| || ||| |||||||| | | |||||| ||||||| ||
Sbjct 5276090 ACATGCTCAGAGCTTGCTGGGACAATGTGGGGGTGGGAGGCCAGGGCTCTGGAATCTCTG 5276149
Query 108723 GCATCCCCCAGGGTCAGAGGGCTGCT 108748
| | ||| ||||| |||| ||||||
Sbjct 5276150 GGGTGCCCTAGGGTAAGAGTGCTGCT 5276175
>seq107
Length=10122068
Score = 152 bits (168), Expect = 4e-32
Identities = 571/884 (65%), Gaps = 25/884 (3%)
Strand=Plus/Minus
Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747
|| || || ||||||||| | || || || ||||| || || || || || || | ||
Sbjct 4553281 CCCCTTAGCAAAGAAGAGGTGGAGTTTCCAATTGCATATTCTATAGTAGTTCACCACAAA 4553222
Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807
||||||| | || |||| ||| | ||| | || |||||||| | || || |
Sbjct 4553221 ATTGAAATGCTCGACAGGCTCCTGAGGGCCATCTACATGCCTCAGAATTTCTATTGCATT 4553162
Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867
|||||||| || || || | || ||| || || | || ||| ||||||
Sbjct 4553161 CACGTGGACAAAAAATCTGAGGATTCCTTTTTAGATGCAGTGATGGGCATCGCGTCCTGC 4553102
Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927
||| || |||||| ||||||| || ||| | ||||| ||||| || ||| | |
Sbjct 4553101 TTCAGTAACGTCTTCGTGGCCAGCCAGCTGGAGCGTGTGGTCTATGCTTCATGGAGCCGT 4553042
Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985
|| || || ||||| ||||| ||| | ||| | || |||| | ||||| |||||||
Sbjct 4553041 GTCCAGGCAGACCTCAACTGCATGAAGGACCT-CTACAGAA-TGAGTGCAGACTGGAAGT 4552984
Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045
|||| | ||| || || | || || || || || ||||| || || ||| |
Sbjct 4552983 ACTTGATAAATCTTTGTGGTATGGATTTTCCTATTAAAACCAACCTGGAAATTGTCAGGC 4552924
Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaa 108105
|||||| || | |||| | ||||| | || ||||| | | || ||| ||
Sbjct 4552923 AGCTCAAGTCATTAATGGGTGAAAACAGCCTCGAAACTGAGAAAATGCC--AGCCCACAA 4552866
Query 108106 a--aaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGAT 108163
| | | | |||||| | || || || || | | | | | || | || |
Sbjct 4552865 AGCAGAAAGGTGGAAAAAGCGTTACGAAGTCATTAATGG---GAAGCTAACAAACACGGG 4552809
Query 108164 GAAGGAC------CCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGT 108217
| ||| ||||| ||| | | ||| |||| |||| | ||||||||||||
Sbjct 4552808 GGCAGACAAAGTGCCTCCTCCTCTTGAAACACCTGTGTTTTCAGGCAGTGCCTATTTTGT 4552749
Query 108218 GGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGA 108277
|| | ||| | || | || |||| || ||| ||||| | | ||
Sbjct 4552748 GGTCAGTCGGAAATACGTGGGTTACGTGCTAGAGAATGAAAAAATCCAAAACTTTATAGA 4552689
Query 108278 ATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCC 108337
|||| ||||||||||| ||||| || ||| | |||||||||||| |||| | | ||
Sbjct 4552688 GTGGGCAAAAGACACCTACAGCCCTGATGAATATCTCTGGGCCACCATTCAAAG-GATCG 4552630
Query 108338 GTGGA-TGCCTGGCTCTGT-TCCT--AGCCACCCCAAGTATCACATCTCAGACATGACTG 108393
|| | | |||||| | | |||| ||||| ||||| |||| || |||||| |
Sbjct 4552629 CTGAAGTCCCTGGCGCATTCTCCTCAAGCCAT---AAGTACGACATGTCTGACATGCAGG 4552573
Query 108394 CCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTT 108453
| | || || | ||||| ||| | ||| | || || ||||| || ||| || || |
Sbjct 4552572 CGGTGGCAAGATTTGTCAAATGGTACTACTATGAAGGCGATGTTTCCAAGGGCGCCCCCT 4552513
Query 108454 ATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGT 108513
| | |||||| ||| |||| | | || ||||| ||| ||||||||||||| ||
Sbjct 4552512 ACCCGCCCTGCAGTGGTGTCCACGTGCGCTCCGTCTGCGTTTTCGGGGCCGGGGACTTGA 4552453
Query 108514 ACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557
||||||| || || || || ||| | || || ||||||||||||
Sbjct 4552452 ACTGGATGCTGCACAAGCACCACTTGTTTGCCAACAAGTTTGAC 4552409
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 348241961862102
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