Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq4 149 5e-31 seq16 145 6e-30 >seq4 Length=36583390 Score = 149 bits (164), Expect = 5e-31 Identities = 496/765 (65%), Gaps = 9/765 (1%) Strand=Plus/Plus Query 20008 TTTGGAATGCAATCTCGATATAACTTGAGAAATGAATTTCCCTTATTAACTACGAAACGG 20067 ||||| ||||| | | || ||| ||||| |||| ||||| | | || || || || Sbjct 19717670 TTTGGCATGCAGGCACACTACAACCTGAGAGATGAGTTTCCTCTGCTGACAACCAAGCGT 19717729 Query 20068 GTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGGTTTATTAAAGGATCAACAAATTCT 20127 || ||| | | ||| ||||| |||||||| | ||| ||| || ||||| || ||| || Sbjct 19717730 GTGTTT-GCACAGGTGTTGTGGAAGAGTTGCTGTGGCGTATCAA-GGATCCACCAATGCT 19717787 Query 20128 ACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGAGCGCACATGGATCTAAGCAATTTTTA 20187 | || || || ||||| ||||| ||| || ||| || | ||||| Sbjct 19717788 AGAGAACTGTCTTCCAAGGGAGTGAAGATCTGGGATGCCAGTGGGTCCCGAGACTTTTTG 19717847 Query 20188 CACAGCAATGGATTTGACAACCGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAA 20247 ||||| ||||| || | | |||| || |||| || || || ||||| ||||| Sbjct 19717848 GACAGCCTGGGATTCTTCACCTGAGAAGAAGGAGATTCAGGCCCAGTTTATGGCTTTCAG 19717907 Query 20248 TGGAGACATTTTGGAGCTGAATATGTTGACATGAACACAAATTATTTTGGACAAGGAGTA 20307 ||||| ||||||| || |||||| || |||| || || | | || ||||||||| Sbjct 19717908 TGGAGGCATTTTGAGGCAGAATATAAAGATCTGAATTCAGATGGTGTAGGTCAAGGAGTA 19717967 Query 20308 GATCAATTACAAAATGTTATTAATTTAATTAAAACGAACCCAAACGACAGAAGAATTATT 20367 || || | ||||| |||| | | ||| ||||| ||||| || |||||||||| || Sbjct 19717968 GACCAGCTGCAAAAGGTTACTGACACAATCAAAACCAACCCTGAC-ACAGAAGAATCATC 19718026 Query 20368 TTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTA 20427 | ||||| | ||| | ||| | ||| | ||| | |||| || ||| || Sbjct 19718027 ATGTGCGCTTAGAATCCACAAGGCCTTCCTCAGACGGCGCTAACTCCCTGCCATGCCCTT 19718086 Query 20428 TGCCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGAT 20487 ||||| || | || | || | ||| || | || || |||| || | || | | Sbjct 19718087 TGCCAGTTCTCTGTGGTGAACAGTGAGCTGACCTGCCAGCTGTAGCAGAGGTCAGGATAC 19718146 Query 20488 ATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCA 20547 ||||| ||||| || ||||||| ||||| || ||||| | | | || || | | ||| Sbjct 19718147 ATGGGCCTGGGGGTACCTTTCACCATTGCCAGCTATGCCCAGTTCACCTACA--GTCGCA 19718204 Query 20548 CATGTTACAGATTTAAAAACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTAC 20607 || | | || | || | ||||||| | | || | ||||| || | ||||| | Sbjct 19718205 CACATCATAGGCCTGAAGCCACGTGACTTTGAATATACTTTGGGAGATGCACCTATTTTC 19718264 Query 20608 CTTAATCATATAGAACCTTTAAAATTACAGTTAACACGACAACCAAAACAATTCCCAACT 20667 | ||||| | || || | ||| | ||| | || |||||| || ||||| | Sbjct 19718265 CAGAATCACACTGAGCCCCTGAAAGTTCAGCTCCAGAGAGAACCAAGACCTTTCCCCAAG 19718324 Query 20668 CTTCGCATTACTCGAACTGTTAAAGATATTAACGATTTTAAAGCTGATGATTTTGTGTTA 20727 || ||||| ||| ||| | ||| | || || |||| ||| || ||| | | Sbjct 19718325 CTCAGCATTCTTCGGGAAGTTGAGACAATTGATGAATTCAAAGTTGAAGACTTTCAGATT 19718384 Query 20728 GAAGGTTATAATCCCC--ATAATTCAATTCCAATGGAAATGTCTG 20770 ||||| || ||||| | | ||| || |||||||||| ||| Sbjct 19718385 GAAGGGTACAATCCTCGTCTGATT--GTTAAAATGGAAATGGCTG 19718427 >seq16 Length=28134011 Score = 145 bits (160), Expect = 6e-30 Identities = 368/554 (66%), Gaps = 13/554 (2%) Strand=Plus/Minus Query 20221 GATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATG 20280 |||||||| || || ||||| ||||| |||||||||||||| || ||| || || ||| Sbjct 9569523 GATTTGGGCCCAGTTTATGGCTTTCAGTGGAGACATTTTGGGGCAGAACATAAAGATATG 9569464 Query 20281 AACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAA 20340 || || |||||| || ||||||||||| || |||| |||||| ||| ||| Sbjct 9569463 AATTCATATTATTCAGGCCAAGGAGTAGACCAGCAGCAAA--GTTATTGCCACAATCAAA 9569406 Query 20341 ACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTA 20400 | ||||| | || |||||||| || || ||||| | ||||| | ||| | Sbjct 9569405 AGCAACCCTGAGGATAGAAGAATCATCACGTGTTATTGGAATCCAAAAGACCTTCCTCTG 9569346 Query 20401 ATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTCG 20460 | || ||||||| || || | || ||||| | ||| | || | ||| |||| Sbjct 9569345 ACGGTGATGCCTCCTTGCCAAGTCCTTTGCCAGTCCTACAT---GAACAGTGAGCTGTCC 9569289 Query 20461 TGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGT 20520 || || | || || || | || ||||| ||||| || |||||||| || || || Sbjct 9569288 TGCCAGCT-TACCAGAAGTCAGGAGACATGGGCCTGGG-GTGCCTTTCAACATGGCCAGC 9569231 Query 20521 TATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTAGTC 20580 | ||||| || || || | ||| | | | || | |||||||| || Sbjct 9569230 TTCCACCTGCTCACCTACATAACCAAACACATAATGAGCCTGAAGCCAGGTGACTTTGTG 9569171 Query 20581 CACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACAGTTA 20640 || || | ||||| || ||||||||||| ||||| || || || | ||| | ||| | Sbjct 9569170 CATACTTTGGGAGATGCACATATTTACCTGAATCACATTGAGCCCCTGAAAGTTCAGCTC 9569111 Query 20641 ACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCG---AACTGTTAAAGATATT 20697 || ||| |||||| || ||||| | || ||||| | | ||||| | || || Sbjct 9569110 ACTCGAGAACCAAGACCTTTCCCCAAGCTCAGCATTCTTGGAAAAACTGAGACAG---TT 9569054 Query 20698 AACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCATAATTCAATTCCA 20757 | ||||| |||||||| || ||| | | ||| || ||||| ||| | ||| | Sbjct 9569053 GATGATTTCAAAGCTGAAGACTTTCAGATTGAAAAGTACAATCCTCATCCAACTATTAAA 9568994 Query 20758 ATGGAAATGTCTGT 20771 ||||||||| |||| Sbjct 9568993 ATGGAAATGGCTGT 9568980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399153238257235