Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_002686.2
Length=124784
Score E
Sequences producing significant alignments: (Bits) Value
seq4 149 5e-31
seq16 145 6e-30
>seq4
Length=36583390
Score = 149 bits (164), Expect = 5e-31
Identities = 496/765 (65%), Gaps = 9/765 (1%)
Strand=Plus/Plus
Query 20008 TTTGGAATGCAATCTCGATATAACTTGAGAAATGAATTTCCCTTATTAACTACGAAACGG 20067
||||| ||||| | | || ||| ||||| |||| ||||| | | || || || ||
Sbjct 19717670 TTTGGCATGCAGGCACACTACAACCTGAGAGATGAGTTTCCTCTGCTGACAACCAAGCGT 19717729
Query 20068 GTATTTTGGAAAGGCGTTGTTGAAGAGTTATTATGGTTTATTAAAGGATCAACAAATTCT 20127
|| ||| | | ||| ||||| |||||||| | ||| ||| || ||||| || ||| ||
Sbjct 19717730 GTGTTT-GCACAGGTGTTGTGGAAGAGTTGCTGTGGCGTATCAA-GGATCCACCAATGCT 19717787
Query 20128 ACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGAGCGCACATGGATCTAAGCAATTTTTA 20187
| || || || ||||| ||||| ||| || ||| || | |||||
Sbjct 19717788 AGAGAACTGTCTTCCAAGGGAGTGAAGATCTGGGATGCCAGTGGGTCCCGAGACTTTTTG 19717847
Query 20188 CACAGCAATGGATTTGACAACCGTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAA 20247
||||| ||||| || | | |||| || |||| || || || ||||| |||||
Sbjct 19717848 GACAGCCTGGGATTCTTCACCTGAGAAGAAGGAGATTCAGGCCCAGTTTATGGCTTTCAG 19717907
Query 20248 TGGAGACATTTTGGAGCTGAATATGTTGACATGAACACAAATTATTTTGGACAAGGAGTA 20307
||||| ||||||| || |||||| || |||| || || | | || |||||||||
Sbjct 19717908 TGGAGGCATTTTGAGGCAGAATATAAAGATCTGAATTCAGATGGTGTAGGTCAAGGAGTA 19717967
Query 20308 GATCAATTACAAAATGTTATTAATTTAATTAAAACGAACCCAAACGACAGAAGAATTATT 20367
|| || | ||||| |||| | | ||| ||||| ||||| || |||||||||| ||
Sbjct 19717968 GACCAGCTGCAAAAGGTTACTGACACAATCAAAACCAACCCTGAC-ACAGAAGAATCATC 19718026
Query 20368 TTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTA 20427
| ||||| | ||| | ||| | ||| | ||| | |||| || ||| ||
Sbjct 19718027 ATGTGCGCTTAGAATCCACAAGGCCTTCCTCAGACGGCGCTAACTCCCTGCCATGCCCTT 19718086
Query 20428 TGCCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGAT 20487
||||| || | || | || | ||| || | || || |||| || | || | |
Sbjct 19718087 TGCCAGTTCTCTGTGGTGAACAGTGAGCTGACCTGCCAGCTGTAGCAGAGGTCAGGATAC 19718146
Query 20488 ATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCA 20547
||||| ||||| || ||||||| ||||| || ||||| | | | || || | | |||
Sbjct 19718147 ATGGGCCTGGGGGTACCTTTCACCATTGCCAGCTATGCCCAGTTCACCTACA--GTCGCA 19718204
Query 20548 CATGTTACAGATTTAAAAACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTAC 20607
|| | | || | || | ||||||| | | || | ||||| || | ||||| |
Sbjct 19718205 CACATCATAGGCCTGAAGCCACGTGACTTTGAATATACTTTGGGAGATGCACCTATTTTC 19718264
Query 20608 CTTAATCATATAGAACCTTTAAAATTACAGTTAACACGACAACCAAAACAATTCCCAACT 20667
| ||||| | || || | ||| | ||| | || |||||| || ||||| |
Sbjct 19718265 CAGAATCACACTGAGCCCCTGAAAGTTCAGCTCCAGAGAGAACCAAGACCTTTCCCCAAG 19718324
Query 20668 CTTCGCATTACTCGAACTGTTAAAGATATTAACGATTTTAAAGCTGATGATTTTGTGTTA 20727
|| ||||| ||| ||| | ||| | || || |||| ||| || ||| | |
Sbjct 19718325 CTCAGCATTCTTCGGGAAGTTGAGACAATTGATGAATTCAAAGTTGAAGACTTTCAGATT 19718384
Query 20728 GAAGGTTATAATCCCC--ATAATTCAATTCCAATGGAAATGTCTG 20770
||||| || ||||| | | ||| || |||||||||| |||
Sbjct 19718385 GAAGGGTACAATCCTCGTCTGATT--GTTAAAATGGAAATGGCTG 19718427
>seq16
Length=28134011
Score = 145 bits (160), Expect = 6e-30
Identities = 368/554 (66%), Gaps = 13/554 (2%)
Strand=Plus/Minus
Query 20221 GATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATG 20280
|||||||| || || ||||| ||||| |||||||||||||| || ||| || || |||
Sbjct 9569523 GATTTGGGCCCAGTTTATGGCTTTCAGTGGAGACATTTTGGGGCAGAACATAAAGATATG 9569464
Query 20281 AACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAA 20340
|| || |||||| || ||||||||||| || |||| |||||| ||| |||
Sbjct 9569463 AATTCATATTATTCAGGCCAAGGAGTAGACCAGCAGCAAA--GTTATTGCCACAATCAAA 9569406
Query 20341 ACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTA 20400
| ||||| | || |||||||| || || ||||| | ||||| | ||| |
Sbjct 9569405 AGCAACCCTGAGGATAGAAGAATCATCACGTGTTATTGGAATCCAAAAGACCTTCCTCTG 9569346
Query 20401 ATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTCG 20460
| || ||||||| || || | || ||||| | ||| | || | ||| ||||
Sbjct 9569345 ACGGTGATGCCTCCTTGCCAAGTCCTTTGCCAGTCCTACAT---GAACAGTGAGCTGTCC 9569289
Query 20461 TGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGT 20520
|| || | || || || | || ||||| ||||| || |||||||| || || ||
Sbjct 9569288 TGCCAGCT-TACCAGAAGTCAGGAGACATGGGCCTGGG-GTGCCTTTCAACATGGCCAGC 9569231
Query 20521 TATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTAGTC 20580
| ||||| || || || | ||| | | | || | |||||||| ||
Sbjct 9569230 TTCCACCTGCTCACCTACATAACCAAACACATAATGAGCCTGAAGCCAGGTGACTTTGTG 9569171
Query 20581 CACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACAGTTA 20640
|| || | ||||| || ||||||||||| ||||| || || || | ||| | ||| |
Sbjct 9569170 CATACTTTGGGAGATGCACATATTTACCTGAATCACATTGAGCCCCTGAAAGTTCAGCTC 9569111
Query 20641 ACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCG---AACTGTTAAAGATATT 20697
|| ||| |||||| || ||||| | || ||||| | | ||||| | || ||
Sbjct 9569110 ACTCGAGAACCAAGACCTTTCCCCAAGCTCAGCATTCTTGGAAAAACTGAGACAG---TT 9569054
Query 20698 AACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCATAATTCAATTCCA 20757
| ||||| |||||||| || ||| | | ||| || ||||| ||| | ||| |
Sbjct 9569053 GATGATTTCAAAGCTGAAGACTTTCAGATTGAAAAGTACAATCCTCATCCAACTATTAAA 9568994
Query 20758 ATGGAAATGTCTGT 20771
||||||||| ||||
Sbjct 9568993 ATGGAAATGGCTGT 9568980
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399153238257235
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |