Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq87 210 2e-49 seq23 111 2e-19 >seq87 Length=11743621 Score = 210 bits (232), Expect = 2e-49 Identities = 554/832 (67%), Gaps = 24/832 (3%) Strand=Plus/Plus Query 13928 ACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAAT 13987 ||||| || || |||||||||||| | |||||| |||| ||||| |||||||| |||||| Sbjct 8842170 ACTCTCTTCTCGAAGAAGTTAGTTCTCCCTTCCTGTGAAATATTCTCCATAAAGTCAAAT 8842229 Query 13988 GGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATG 14047 |||||| | | || || || | | |||| ||||| | | || ||| || || | Sbjct 8842230 GGATTTTCTACTCTGAATACCTTGTTAAAACCCAGTTCCAGCATTAGTCTCTCTGCTAC- 8842288 Query 14048 AACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATA 14107 ||| |||| || || ||||||| |||||||| | || || || ||| | | Sbjct 8842289 AACGCAATGTACTGCTTCATTAAAGTGCAATTCATTCTGATAAGCTTCACATGCAAGGCC 8842348 Query 14108 TTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCG-TAATAATTTC 14166 | || | | || | |||||| ||||| | | ||||| || | || | || Sbjct 8842349 TCAGTAAGGAGCTCCTATTCTATCCTAACAGCAT---TAATAATTATTTCTTTTACTCTC 8842405 Query 14167 AT-TAGAAGGAGGATATTTTAGA---TGTTTAAAAATTAAACACGCAAAATCACAATGAA 14222 | || ||| | | ||| ||||| || || || | ||| ||||| || | Sbjct 8842406 TGCTCCAA--AGGTTTGTGTAGCAAGTGTTTGAACGCTATGCAGGTAAAGTCACAGTGTA 8842463 Query 14223 GGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtt 14282 | ||||||||| ||||| | ||| || ||| |||| | || ||||| |||||||||| Sbjct 8842464 AACTCTCATCTCTGCTAATGAATTCATTGGAACATGTGAGGCCAGGCATTAATCCTCGTT 8842523 Query 14283 tttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAA 14342 | || | || ||||| | || || || || |||||||| ||||| || | || |||| Sbjct 8842524 TCTTGAGTCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTATTGGGGCAA 8842583 Query 14343 ACGCTATTAATCGTTCT--CCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCA 14400 | |||| ||| || ||| | | |||| ||| | | ||||| | ||||| Sbjct 8842584 AGGCTAC--ATCACACTTACCATAGGTAGCTTCTTTTTCCCCGATCCAATGCAAGGCCCA 8842641 Query 14401 TTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCCTTCTC 14460 || | || || || | | || ||||||| |||| ||||| || | | ||| | || Sbjct 8842642 ATCTGCCTTCTTCTTTACACAAGGCATTGTT-CAATGGCATTGAAGAGAAACTCCCTTTC 8842700 Query 14461 TTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTC 14520 || | | | |||||| || ||| |||| | | ||||||||||| ||||||||||| Sbjct 8842701 CTTGGAATCTTTAATGTAAGTGTCAGTAAGGAGATTGTACATTTCAGAATGTATGTTTTC 8842760 Query 14521 CATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAA 14580 ||| || || || || ||||| | ||| | ||||||| || || | | | ||| Sbjct 8842761 CATTGCAATTTGGAAGCCATAGAGACAGCAGGCTTCTGTAATCTGAACTTGTTGGCTAAA 8842820 Query 14581 TCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC--AATATG 14638 || | ||| |||||||| | ||| ||||| || |||||||| || ||| || ||| Sbjct 8842821 TCGCACCAGCAAGTTTTCATTCATTATGCCATCGCTTGCTGCAAAGAAAGCCAGAACATG 8842880 Query 14639 TTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAA--TCCTTAG 14696 | | |||| ||| |||| | | || || ||| | ||| || ||||| | Sbjct 8842881 TGAT--GTAAAATATCTTTCTTTAGGCTTCAGGGCTTCCCAGT--GCTGAATGTCCTTGG 8842936 Query 14697 AAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACAT 14748 ||||||| | || ||| | |||||||| || ||||||| |||||||| Sbjct 8842937 AAAGATCCAGCTCCTCAGCAGTCCAAAAGGAAGGCTCAGCTTTCTTATACAT 8842988 >seq23 Length=24341844 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| ||||||||||| || |||||||| | || ||||| ||||||||||| | Sbjct 8996043 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGCCCAGGCATTAATCCTCGTTTCT 8996102 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||| | || || || || |||||||| ||||| || || || ||||| | Sbjct 8996103 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACGGCTGCAAAGG 8996162 Query 14346 CTATTAATCGTTCTCC 14361 ||| | || ||||| Sbjct 8996163 CTACAACACGCTCTCC 8996178 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 || || ||| |||| || | |||| ||| || | | | || || || ||||| | Sbjct 8994258 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGGCTGGACATCACTCCCATCCTC 8994317 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 ||||| || | ||||| || |||||||||||||| || ||||| ||||| ||||| ||| Sbjct 8994318 TGATACTCGCCCACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAATATTCTCC 8994377 Query 13976 ATAAAATCAAATGGATTT 13993 ||||| ||||| |||||| Sbjct 8994378 ATAAAGTCAAACGGATTT 8994395 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 |||||| || |||||||| | |||||||||||||| |||||||||||||| || || || Sbjct 8998521 AATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 8998580 Query 14533 AAAACCATAAAAACATCTAGCTTCTG 14558 || ||||| ||||| | ||||||| Sbjct 8998581 GAAGCCATAGAAACAGCGGGCTTCTG 8998606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482307476609640