Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq87 210 2e-49
seq23 111 2e-19
>seq87
Length=11743621
Score = 210 bits (232), Expect = 2e-49
Identities = 554/832 (67%), Gaps = 24/832 (3%)
Strand=Plus/Plus
Query 13928 ACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAAT 13987
||||| || || |||||||||||| | |||||| |||| ||||| |||||||| ||||||
Sbjct 8842170 ACTCTCTTCTCGAAGAAGTTAGTTCTCCCTTCCTGTGAAATATTCTCCATAAAGTCAAAT 8842229
Query 13988 GGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATG 14047
|||||| | | || || || | | |||| ||||| | | || ||| || || |
Sbjct 8842230 GGATTTTCTACTCTGAATACCTTGTTAAAACCCAGTTCCAGCATTAGTCTCTCTGCTAC- 8842288
Query 14048 AACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATA 14107
||| |||| || || ||||||| |||||||| | || || || ||| | |
Sbjct 8842289 AACGCAATGTACTGCTTCATTAAAGTGCAATTCATTCTGATAAGCTTCACATGCAAGGCC 8842348
Query 14108 TTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCG-TAATAATTTC 14166
| || | | || | |||||| ||||| | | ||||| || | || | ||
Sbjct 8842349 TCAGTAAGGAGCTCCTATTCTATCCTAACAGCAT---TAATAATTATTTCTTTTACTCTC 8842405
Query 14167 AT-TAGAAGGAGGATATTTTAGA---TGTTTAAAAATTAAACACGCAAAATCACAATGAA 14222
| || ||| | | ||| ||||| || || || | ||| ||||| || |
Sbjct 8842406 TGCTCCAA--AGGTTTGTGTAGCAAGTGTTTGAACGCTATGCAGGTAAAGTCACAGTGTA 8842463
Query 14223 GGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtt 14282
| ||||||||| ||||| | ||| || ||| |||| | || ||||| ||||||||||
Sbjct 8842464 AACTCTCATCTCTGCTAATGAATTCATTGGAACATGTGAGGCCAGGCATTAATCCTCGTT 8842523
Query 14283 tttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAA 14342
| || | || ||||| | || || || || |||||||| ||||| || | || ||||
Sbjct 8842524 TCTTGAGTCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTATTGGGGCAA 8842583
Query 14343 ACGCTATTAATCGTTCT--CCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCA 14400
| |||| ||| || ||| | | |||| ||| | | ||||| | |||||
Sbjct 8842584 AGGCTAC--ATCACACTTACCATAGGTAGCTTCTTTTTCCCCGATCCAATGCAAGGCCCA 8842641
Query 14401 TTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCCTTCTC 14460
|| | || || || | | || ||||||| |||| ||||| || | | ||| | ||
Sbjct 8842642 ATCTGCCTTCTTCTTTACACAAGGCATTGTT-CAATGGCATTGAAGAGAAACTCCCTTTC 8842700
Query 14461 TTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTC 14520
|| | | | |||||| || ||| |||| | | ||||||||||| |||||||||||
Sbjct 8842701 CTTGGAATCTTTAATGTAAGTGTCAGTAAGGAGATTGTACATTTCAGAATGTATGTTTTC 8842760
Query 14521 CATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAA 14580
||| || || || || ||||| | ||| | ||||||| || || | | | |||
Sbjct 8842761 CATTGCAATTTGGAAGCCATAGAGACAGCAGGCTTCTGTAATCTGAACTTGTTGGCTAAA 8842820
Query 14581 TCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC--AATATG 14638
|| | ||| |||||||| | ||| ||||| || |||||||| || ||| || |||
Sbjct 8842821 TCGCACCAGCAAGTTTTCATTCATTATGCCATCGCTTGCTGCAAAGAAAGCCAGAACATG 8842880
Query 14639 TTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAA--TCCTTAG 14696
| | |||| ||| |||| | | || || ||| | ||| || ||||| |
Sbjct 8842881 TGAT--GTAAAATATCTTTCTTTAGGCTTCAGGGCTTCCCAGT--GCTGAATGTCCTTGG 8842936
Query 14697 AAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACAT 14748
||||||| | || ||| | |||||||| || ||||||| ||||||||
Sbjct 8842937 AAAGATCCAGCTCCTCAGCAGTCCAAAAGGAAGGCTCAGCTTTCTTATACAT 8842988
>seq23
Length=24341844
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285
|||||||||| ||||||||||| || |||||||| | || ||||| ||||||||||| |
Sbjct 8996043 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGCCCAGGCATTAATCCTCGTTTCT 8996102
Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345
| | ||| ||||| | || || || || |||||||| ||||| || || || ||||| |
Sbjct 8996103 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACGGCTGCAAAGG 8996162
Query 14346 CTATTAATCGTTCTCC 14361
||| | || |||||
Sbjct 8996163 CTACAACACGCTCTCC 8996178
Score = 91.5 bits (100), Expect = 1e-13
Identities = 103/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915
|| || ||| |||| || | |||| ||| || | | | || || || ||||| |
Sbjct 8994258 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGGCTGGACATCACTCCCATCCTC 8994317
Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975
||||| || | ||||| || |||||||||||||| || ||||| ||||| ||||| |||
Sbjct 8994318 TGATACTCGCCCACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAATATTCTCC 8994377
Query 13976 ATAAAATCAAATGGATTT 13993
||||| ||||| ||||||
Sbjct 8994378 ATAAAGTCAAACGGATTT 8994395
Score = 87.8 bits (96), Expect = 2e-12
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532
|||||| || |||||||| | |||||||||||||| |||||||||||||| || || ||
Sbjct 8998521 AATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 8998580
Query 14533 AAAACCATAAAAACATCTAGCTTCTG 14558
|| ||||| ||||| | |||||||
Sbjct 8998581 GAAGCCATAGAAACAGCGGGCTTCTG 8998606
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482307476609640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |