Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq102 168 6e-37
seq88 123 2e-23
seq131 86.0 6e-12
seq40 82.4 7e-11
>seq102
Length=10627846
Score = 168 bits (186), Expect = 6e-37
Identities = 370/545 (68%), Gaps = 16/545 (3%)
Strand=Plus/Minus
Query 23028 AGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATA 23087
|| |||| || || || || ||||| |||||| || |||||||| ||||| || || |
Sbjct 1346536 AGCCAAG-TTACAAACTGCAACCTCATCTTTGCTAGTATACTCTACTATTTCTGTGCACA 1346478
Query 23088 GATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCT 23147
| ||||| || || ||||| |||| || | ||||||| || | ||| | |||||||
Sbjct 1346477 GGTTGCTGCATTTGATCGTTCCCAGGTTCTGCCGGTTGCTCTTCCAATTATAGGAATCCT 1346418
Query 23148 TGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAG 23207
|||||||||||||| | || || ||||| |||| ||||| |||| || ||| |
Sbjct 1346417 TGTAGAGCATGTACAGAGTACCTGTCTCTGCCTGAGACTCAGTGATGGCATACCAAAGCT 1346358
Query 23208 TCTGAGCGTGAAC-ACGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGC 23265
||| || | || || | | || || | || | || ||| || ||| ||| | |
Sbjct 1346357 GCTGTGCTTTTACAACTTTG--CGGACACGACCCTGTTTCTCATAACTTTTGTATAGCTT 1346300
Query 23266 GTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACAT--GAGA 23323
|||||||| | || || || ||||||| | | | | |||||| | |||
Sbjct 1346299 CTCAAATTCCTCTCCCCAAATCTCATCCAGGCCAAGAAACTCATTTGGACACCTCGAAGA 1346240
Query 23324 C---TCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCG 23380
| ||| ||| |||| || || || ||||||| |||||| | ||||| || ||
Sbjct 1346239 CCAGTCCTGATT-AGTC----TCCACTAGTTTCATAAAGAGATCCAGAATCCAAAGGGCA 1346185
Query 23381 TAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAG 23440
||| || || | ||| || || || || || |||||||| || ||||| | ||
Sbjct 1346184 AGGAATAGGTCCCTGGCATGCTGTTCTTCCTTCCCTGTGTTCTTCTTTAAATCAAGGAAC 1346125
Query 23441 TCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTG 23500
|| || | || | |||||| ||||| ||||||| ||||| | || |||| ||| ||
Sbjct 1346124 TCAAAGATGT-CAAATGCCAAGGCTCCAGGTAAATAGCAAATACACCGGGTCACTTGTTC 1346066
Query 23501 CCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCG 23560
|| ||| || || || | | |||||||| |||||||| ||||| || || || |
Sbjct 1346065 CCACCCCAGTCCACATACCTTACTGTGTTGTTATACACTCTCAGCATAGGTACAAGGCTA 1346006
Query 23561 TTGGA 23565
|||||
Sbjct 1346005 TTGGA 1346001
Score = 87.8 bits (96), Expect = 2e-12
Identities = 320/499 (64%), Gaps = 8/499 (2%)
Strand=Plus/Minus
Query 22115 GTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTCTTCAGA 22174
|| ||||| || | || || | ||| | || | | ||||||||| || ||||||| |
Sbjct 1347444 GTGAACTGGATTGGATTAGCCACTGGTCTTGTCCTTAAATAATACATCCCAGTCTTCAAA 1347385
Query 22175 CCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAAGTCCATG 22234
||| |||||| | || || | || || | ||| ||||| | ||| | ||
Sbjct 1347384 CCCTGCTTCCAGCCATAGAACTACATACTAGTGAGTTTCCCATAGTTAGGCTCAGCGATA 1347325
Query 22235 TACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCG--GCGGCCATATTTA 22292
| | || | |||| || ||||| || || || |||| || || |||| || |
Sbjct 1347324 TGGATGTTCAGACACTGGCTTTGATCAATGAAAGCCCCTCTCTCTCAGCTTCCATCTTGA 1347265
Query 22293 TCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGGTA 22352
| || | || |||||||| || ||||| || |||||| | | || || |
Sbjct 1347264 ATATGGTTTTCTGAGAGATTTCCCACACCGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 1347205
Query 22353 TCGATTCGATCCTCTGGACGGACCCGTTATTGTGT---ATGATCAAATTTTTAATCGTAT 22409
| | || ||||||| || || |||| | || ||| ||||| | | |
Sbjct 1347204 TTTCATGTATGCTCTGGATAGAGCC---ATTGCATGAAATAATCTGTTTTTTCACCTCTT 1347148
Query 22410 CGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACT 22469
| |||||||| | | | || | |||||| | | || | ||||| | ||||| |
Sbjct 1347147 CATTCCACAAGTCCCTCTCAGTAAGATCTTTCAGTAAGTGGGGATTCACAATCTGAAATT 1347088
Query 22470 CGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGT 22529
| || |||||||| | || ||| ||||||| || ||||||| || ||||| |
Sbjct 1347087 CTCCTGACAAGACTCTGCAAGTGTAGATGTTGGTGGTATACGGTTCAGTGGACTCATTAT 1347028
Query 22530 TTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCA 22589
| |||||||||||||| || ||||| || |||||| | || | |||| |||||| |
Sbjct 1347027 TCCCCAGTATCTGAGCAGTTGAAGCAGTAGGCATCAGAGCAATAAGTAAACTGTTTCTTA 1346968
Query 22590 AGCCGTGCTTTGAAATTTT 22608
|| | ||||| ||| ||
Sbjct 1346967 CACCATACTTTGCAATCTT 1346949
>seq88
Length=11737398
Score = 123 bits (136), Expect = 2e-23
Identities = 118/151 (78%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105
||||||| |||||| || |||||||| ||||| || || || ||||| || || || |
Sbjct 370043 CCACCTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATTG 370102
Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165
| |||| || ||||||||| || ||||| || ||||||||||||||||||||||| |
Sbjct 370103 TTCCCAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCCTTGTAGAGCATGTACGGGG 370162
Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGC 23196
| || ||||| ||| ||||| ||||| ||
Sbjct 370163 TACCTGTCTCTGTCTGAGACTCAATGATGGC 370193
>seq131
Length=8015323
Score = 86.0 bits (94), Expect = 6e-12
Identities = 160/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| |||| || || || |||||| | || || || ||
Sbjct 2518641 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACAATCACCCTTGAAGTAGAGCCCAGT 2518582
Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || | ||||| || ||| | |||||||||||| | || || |||||
Sbjct 2518581 GACACCATTGAGAATGTCAAGGCAAAGA-TCCAAGACAAGGAAGGCATTCCTCCTGACCA 2518523
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370
|||| | | || || |||||||| ||| ||||||| | | | || || || || |
Sbjct 2518522 GCAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGA-TGGACGTACCCTGTCTGACTACA 2518464
Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
|||| || ||||| || || || || ||||| || | ||||||| |||
Sbjct 2518463 ACATCCAGAAAGAGTCCACGCTGCACCTGGTCCTGCGCTTGAGGGGAGGT 2518414
>seq40
Length=19935044
Score = 82.4 bits (90), Expect = 7e-11
Identities = 111/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||||||||| || || || || || |||||| | || || |||||
Sbjct 1219039 ATGCAAATTTTCGTAAAGACCCTAACGGGAAAGACCATCACCCTGGAGGTGGAACCCAGT 1219098
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | || || | || ||| || |||||| | || || ||||||
Sbjct 1219099 GACACCATCGAGAACGTAAAGGCTAAGATCCAGGATAAAGAAGGCATCCCTCCTGACCAG 1219158
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
||| | || || || || ||||| ||| |||||||
Sbjct 1219159 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGA 1219193
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445731167738160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |