Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq102 168 6e-37 seq88 123 2e-23 seq131 86.0 6e-12 seq40 82.4 7e-11 >seq102 Length=10627846 Score = 168 bits (186), Expect = 6e-37 Identities = 370/545 (68%), Gaps = 16/545 (3%) Strand=Plus/Minus Query 23028 AGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATA 23087 || |||| || || || || ||||| |||||| || |||||||| ||||| || || | Sbjct 1346536 AGCCAAG-TTACAAACTGCAACCTCATCTTTGCTAGTATACTCTACTATTTCTGTGCACA 1346478 Query 23088 GATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCT 23147 | ||||| || || ||||| |||| || | ||||||| || | ||| | ||||||| Sbjct 1346477 GGTTGCTGCATTTGATCGTTCCCAGGTTCTGCCGGTTGCTCTTCCAATTATAGGAATCCT 1346418 Query 23148 TGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAG 23207 |||||||||||||| | || || ||||| |||| ||||| |||| || ||| | Sbjct 1346417 TGTAGAGCATGTACAGAGTACCTGTCTCTGCCTGAGACTCAGTGATGGCATACCAAAGCT 1346358 Query 23208 TCTGAGCGTGAAC-ACGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGC 23265 ||| || | || || | | || || | || | || ||| || ||| ||| | | Sbjct 1346357 GCTGTGCTTTTACAACTTTG--CGGACACGACCCTGTTTCTCATAACTTTTGTATAGCTT 1346300 Query 23266 GTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACAT--GAGA 23323 |||||||| | || || || ||||||| | | | | |||||| | ||| Sbjct 1346299 CTCAAATTCCTCTCCCCAAATCTCATCCAGGCCAAGAAACTCATTTGGACACCTCGAAGA 1346240 Query 23324 C---TCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCG 23380 | ||| ||| |||| || || || ||||||| |||||| | ||||| || || Sbjct 1346239 CCAGTCCTGATT-AGTC----TCCACTAGTTTCATAAAGAGATCCAGAATCCAAAGGGCA 1346185 Query 23381 TAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAG 23440 ||| || || | ||| || || || || || |||||||| || ||||| | || Sbjct 1346184 AGGAATAGGTCCCTGGCATGCTGTTCTTCCTTCCCTGTGTTCTTCTTTAAATCAAGGAAC 1346125 Query 23441 TCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTG 23500 || || | || | |||||| ||||| ||||||| ||||| | || |||| ||| || Sbjct 1346124 TCAAAGATGT-CAAATGCCAAGGCTCCAGGTAAATAGCAAATACACCGGGTCACTTGTTC 1346066 Query 23501 CCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCG 23560 || ||| || || || | | |||||||| |||||||| ||||| || || || | Sbjct 1346065 CCACCCCAGTCCACATACCTTACTGTGTTGTTATACACTCTCAGCATAGGTACAAGGCTA 1346006 Query 23561 TTGGA 23565 ||||| Sbjct 1346005 TTGGA 1346001 Score = 87.8 bits (96), Expect = 2e-12 Identities = 320/499 (64%), Gaps = 8/499 (2%) Strand=Plus/Minus Query 22115 GTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTCTTCAGA 22174 || ||||| || | || || | ||| | || | | ||||||||| || ||||||| | Sbjct 1347444 GTGAACTGGATTGGATTAGCCACTGGTCTTGTCCTTAAATAATACATCCCAGTCTTCAAA 1347385 Query 22175 CCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCAAGTCCATG 22234 ||| |||||| | || || | || || | ||| ||||| | ||| | || Sbjct 1347384 CCCTGCTTCCAGCCATAGAACTACATACTAGTGAGTTTCCCATAGTTAGGCTCAGCGATA 1347325 Query 22235 TACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCG--GCGGCCATATTTA 22292 | | || | |||| || ||||| || || || |||| || || |||| || | Sbjct 1347324 TGGATGTTCAGACACTGGCTTTGATCAATGAAAGCCCCTCTCTCTCAGCTTCCATCTTGA 1347265 Query 22293 TCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTAACGGTA 22352 | || | || |||||||| || ||||| || |||||| | | || || | Sbjct 1347264 ATATGGTTTTCTGAGAGATTTCCCACACCGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 1347205 Query 22353 TCGATTCGATCCTCTGGACGGACCCGTTATTGTGT---ATGATCAAATTTTTAATCGTAT 22409 | | || ||||||| || || |||| | || ||| ||||| | | | Sbjct 1347204 TTTCATGTATGCTCTGGATAGAGCC---ATTGCATGAAATAATCTGTTTTTTCACCTCTT 1347148 Query 22410 CGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACT 22469 | |||||||| | | | || | |||||| | | || | ||||| | ||||| | Sbjct 1347147 CATTCCACAAGTCCCTCTCAGTAAGATCTTTCAGTAAGTGGGGATTCACAATCTGAAATT 1347088 Query 22470 CGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGT 22529 | || |||||||| | || ||| ||||||| || ||||||| || ||||| | Sbjct 1347087 CTCCTGACAAGACTCTGCAAGTGTAGATGTTGGTGGTATACGGTTCAGTGGACTCATTAT 1347028 Query 22530 TTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCA 22589 | |||||||||||||| || ||||| || |||||| | || | |||| |||||| | Sbjct 1347027 TCCCCAGTATCTGAGCAGTTGAAGCAGTAGGCATCAGAGCAATAAGTAAACTGTTTCTTA 1346968 Query 22590 AGCCGTGCTTTGAAATTTT 22608 || | ||||| ||| || Sbjct 1346967 CACCATACTTTGCAATCTT 1346949 >seq88 Length=11737398 Score = 123 bits (136), Expect = 2e-23 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23046 CCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCG 23105 ||||||| |||||| || |||||||| ||||| || || || ||||| || || || | Sbjct 370043 CCACCTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATTG 370102 Query 23106 TGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCG 23165 | |||| || ||||||||| || ||||| || ||||||||||||||||||||||| | Sbjct 370103 TTCCCAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCCTTGTAGAGCATGTACGGGG 370162 Query 23166 TGCCCGTCTCGACCTGCGACTCGATGATCGC 23196 | || ||||| ||| ||||| ||||| || Sbjct 370163 TACCTGTCTCTGTCTGAGACTCAATGATGGC 370193 >seq131 Length=8015323 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| || || || |||||| | || || || || Sbjct 2518641 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACAATCACCCTTGAAGTAGAGCCCAGT 2518582 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || ||| | |||||||||||| | || || ||||| Sbjct 2518581 GACACCATTGAGAATGTCAAGGCAAAGA-TCCAAGACAAGGAAGGCATTCCTCCTGACCA 2518523 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 |||| | | || || |||||||| ||| ||||||| | | | || || || || | Sbjct 2518522 GCAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGA-TGGACGTACCCTGTCTGACTACA 2518464 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||| || ||||| || || || || ||||| || | ||||||| ||| Sbjct 2518463 ACATCCAGAAAGAGTCCACGCTGCACCTGGTCCTGCGCTTGAGGGGAGGT 2518414 >seq40 Length=19935044 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||||||||| || || || || || |||||| | || || ||||| Sbjct 1219039 ATGCAAATTTTCGTAAAGACCCTAACGGGAAAGACCATCACCCTGGAGGTGGAACCCAGT 1219098 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | || ||| || |||||| | || || |||||| Sbjct 1219099 GACACCATCGAGAACGTAAAGGCTAAGATCCAGGATAAAGAAGGCATCCCTCCTGACCAG 1219158 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||| | || || || || ||||| ||| ||||||| Sbjct 1219159 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGA 1219193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445731167738160