Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq87 95.1 2e-14 seq102 87.8 4e-12 seq23 87.8 4e-12 >seq87 Length=11743621 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 101917 TGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTG 101976 ||| |||||||| || | ||||||||||||||| |||| | || |||||||| ||||| Sbjct 8842591 TGTAGCCTTTGCCCCAATAGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTG 8842532 Query 101977 GATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGA 102036 ||||||| | || | ||||||| ||||| | |||||||| |||||| || || Sbjct 8842531 ACTCAAGAAACGAGGATTAATGCCTGGCCTCACATGTTCCAATGAATTCATTAGCAGAGA 8842472 Query 102037 CGAAGGTCTTCATCGCGACTTTGCATGCAT 102066 || || | || | |||||| | ||||| Sbjct 8842471 TGAGAGTTTACACTGTGACTTTACCTGCAT 8842442 >seq102 Length=10627846 Score = 87.8 bits (96), Expect = 4e-12 Identities = 162/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 94791 TCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAAT 94850 ||| ||||||| |||||| || | ||| || ||| |||||||||||||| || ||||| Sbjct 1345937 TCCCCCAGCAGACTTGGAAATTAGTGCACACTGCTTTAGAGTATCATAAATGCCTTCAAT 1345878 Query 94851 GCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTG-GGGTGTGACTGTTCCAC 94909 || ||||||| | | ||||||| | || ||| |||| ||||| | || ||| Sbjct 1345877 ACTGTCATCTTTCATACTCAGAAGGGAACAGCTAGAACGTTGAGGGTG-GTTGGTACCAG 1345819 Query 94910 AATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTT 94969 ||| | | ||||||| ||||| ||||| | | | || | || | ||||||| Sbjct 1345818 CATTGGAGGGCATGGGGGAGGCATGAGTAAACCAATTCTCAGAGAGAAGGTTGTATGTTT 1345759 Query 94970 CAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCAT 95024 |||| ||| | |||||| | |||||| || |||| || | ||| | ||| Sbjct 1345758 CAATAGCAGCATCAATGTCTTCTTTGTGAATCCCAACAGATACCCTCATCAACAT 1345704 >seq23 Length=24341844 Score = 87.8 bits (96), Expect = 4e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||| |||||||| || || ||||||||||||||| |||| | || ||||| || |||| Sbjct 8996168 TTGTAGCCTTTGCAGCCGTAGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATATTCT 8996109 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 || ||||||| | || | ||||||| ||||| | |||||||| Sbjct 8996108 GGCTCAAGAAACGAGGATTAATGCCTGGGCTCACATTTTCCAATGA 8996063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989503830398465