Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq87 95.1 2e-14
seq102 87.8 4e-12
seq23 87.8 4e-12
>seq87
Length=11743621
Score = 95.1 bits (104), Expect = 2e-14
Identities = 111/150 (74%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 101917 TGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTG 101976
||| |||||||| || | ||||||||||||||| |||| | || |||||||| |||||
Sbjct 8842591 TGTAGCCTTTGCCCCAATAGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTG 8842532
Query 101977 GATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGA 102036
||||||| | || | ||||||| ||||| | |||||||| |||||| || ||
Sbjct 8842531 ACTCAAGAAACGAGGATTAATGCCTGGCCTCACATGTTCCAATGAATTCATTAGCAGAGA 8842472
Query 102037 CGAAGGTCTTCATCGCGACTTTGCATGCAT 102066
|| || | || | |||||| | |||||
Sbjct 8842471 TGAGAGTTTACACTGTGACTTTACCTGCAT 8842442
>seq102
Length=10627846
Score = 87.8 bits (96), Expect = 4e-12
Identities = 162/235 (69%), Gaps = 2/235 (1%)
Strand=Plus/Minus
Query 94791 TCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAAT 94850
||| ||||||| |||||| || | ||| || ||| |||||||||||||| || |||||
Sbjct 1345937 TCCCCCAGCAGACTTGGAAATTAGTGCACACTGCTTTAGAGTATCATAAATGCCTTCAAT 1345878
Query 94851 GCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTG-GGGTGTGACTGTTCCAC 94909
|| ||||||| | | ||||||| | || ||| |||| ||||| | || |||
Sbjct 1345877 ACTGTCATCTTTCATACTCAGAAGGGAACAGCTAGAACGTTGAGGGTG-GTTGGTACCAG 1345819
Query 94910 AATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTT 94969
||| | | ||||||| ||||| ||||| | | | || | || | |||||||
Sbjct 1345818 CATTGGAGGGCATGGGGGAGGCATGAGTAAACCAATTCTCAGAGAGAAGGTTGTATGTTT 1345759
Query 94970 CAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCAT 95024
|||| ||| | |||||| | |||||| || |||| || | ||| | |||
Sbjct 1345758 CAATAGCAGCATCAATGTCTTCTTTGTGAATCCCAACAGATACCCTCATCAACAT 1345704
>seq23
Length=24341844
Score = 87.8 bits (96), Expect = 4e-12
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975
|||| |||||||| || || ||||||||||||||| |||| | || ||||| || ||||
Sbjct 8996168 TTGTAGCCTTTGCAGCCGTAGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCGATATTCT 8996109
Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021
|| ||||||| | || | ||||||| ||||| | ||||||||
Sbjct 8996108 GGCTCAAGAAACGAGGATTAATGCCTGGGCTCACATTTTCCAATGA 8996063
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989503830398465
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |