Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq102 277 2e-69 seq87 219 4e-52 seq23 120 3e-22 seq9 111 1e-19 seq88 102 8e-17 >seq102 Length=10627846 Score = 277 bits (306), Expect = 2e-69 Identities = 1142/1774 (64%), Gaps = 38/1774 (2%) Strand=Plus/Minus Query 36796 GTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGC 36855 ||||| | || ||||| | | | | |||| || | ||||||||| ||||| || | Sbjct 1347444 GTGAACTGGATTGGATTAGCCACTGGTCTTGTCCTTAAATAATACATCCCAGTCTTCAAA 1347385 Query 36856 CCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATA 36915 ||| |||| || || || | |||||| || ||||| | || |||| | | | ||| Sbjct 1347384 CCCTGCTTCCAGCCATAGAACTACATACTAGTGAGTTTCCCATAGTTAGGCTCAGCGATA 1347325 Query 36916 TATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCG--GCTGCCATTTCTA 36973 | || ||| | || |||||||| || || || ||||| || ||| |||| | | Sbjct 1347324 TGGATGTTCAGACACTGGCTTTGATCAATGAAAGCCCCTCTCTCTCAGCTTCCATCTTGA 1347265 Query 36974 AAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTA 37033 | || ||| ||||| || ||||| ||||| ||||| | ||| || | | ||| || | Sbjct 1347264 ATATGGTTTTCTGAGAGATTTCCCACACCGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 1347205 Query 37034 AATC-TAAATGTT--GAATAGAACCATTATGTAACACAAT-TGTATTCTTTATGTCATTA 37089 || | ||| | | ||||| ||||| | | | ||| ||| || || | || | | Sbjct 1347204 TTTCATGTATGCTCTGGATAGAGCCATTGCATGAAATAATCTGTTTT-TTCACCTCTTCA 1347146 Query 37090 TTCCACATATTTCTACTTATTA-GTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATC 37148 ||||||| | || || | || | ||| ||| || ||| ||||| |||| |||||| || Sbjct 1347145 TTCCACAAGTCCCT-CTCAGTAAGATCTTTCAGTAAGTGGGGATTCACAATCTGAAATTC 1347087 Query 37149 TCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATT 37208 ||| || || ||||| | || || || ||| | ||||| |||||| ||||||||||||| Sbjct 1347086 TCCTGACAAGACTCTGCAAGTGTAGATGTTGGTGGTATACGGTTCAGTGGACTCATTATT 1347027 Query 37209 ACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAA 37268 | | ||| |||| || || ||||||||||| | || || || | || ||||| | Sbjct 1347026 CCCCAGTATCTGAGCAGTTGAAGCAGTAGGCATCAGAGCAATAAGTAAACTGTTTCTTAC 1346967 Query 37269 TCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGT-TCT 37327 |||| | ||| ||| ||| | ||| | ||||||| ||||| || | | Sbjct 1346966 ACCATACTTTGCAATCTTCTGTTTGACAAGTTTCTAGTCCCATAGGTCTGTAGGATAACA 1346907 Query 37328 TTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCAT 37387 || |||| | | | || || | ||| || ||||||| | ||| || |||| Sbjct 1346906 TT--CCACGT---ACACCAGAGGATTCTTTTGCTGACTGGAGAGCACTCATAGGTTTCAT 1346852 Query 37388 AAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTT 37447 | | || | || |||||||| ||||| | ||| || || ||||||| || ||| Sbjct 1346851 ATGAGCCATGTTCCTTGGCTAGTTCACAACTGGCTTCCAGGGCTCCATAATAAATGATTT 1346792 Query 37448 CGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATA 37507 | ||||| || |||| |||| | || ||| || || | | ||| || | | Sbjct 1346791 CAAAAATATGCTTATTCAATAACTGGGCATCTGGACTCTCAGAAGGATACTTCATCAGGA 1346732 Query 37508 TAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATC 37567 |||| |||| |||| ||| || || || | || ||||| ||| | ||| | ||| Sbjct 1346731 TAAAAGCATCTGCCAGACCTTGTACCCCAGTTCCAATGGGGTGATGGCTTTTACTTGAT- 1346673 Query 37568 TAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTA 37627 | | |||| | || | ||||| ||||| | |||||||| | || | || | Sbjct 1346672 AACAATGTTCTGGAATAGGGTGGTAATTAATATCAGTAATTTTATTCAAGTTATGGACAA 1346613 Query 37628 GTATTTTCGT-AATTATTCTCAACTTGTCGAA--CATAAATACGTTATTAT-TAACAAAT 37683 | ||| || | || || ||||| | || |||| | ||| | || | ||| | Sbjct 1346612 CAACTTTGGTGACTTCAGCT-AACTTCTTAAAGTCATATGTGTGTTCTGATGTGACATAC 1346554 Query 37684 TTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGT 37743 || ||| | | || | | ||||| || ||||| ||||||| | || || | | | Sbjct 1346553 ATATTCAGGGCCAGGGAAGCCAAGTTACAAACTGCAACCTCATCTTTGCTAGTATACTCT 1346494 Query 37744 ATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTT 37803 | || ||||| || || || || || | || ||||||| || | ||| || Sbjct 1346493 ACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCCGGTTGCTCTTC 1346434 Query 37804 TTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATA 37863 |||| | ||||| || || || || ||| | || ||| ||| |||| ||| | Sbjct 1346433 CAATTATAGGAATCCTTGTAGAGCATGTACAGAGTACCTGTCTCTGCCTGAGACTCAGTG 1346374 Query 37864 ATAGATTTCCATAAACTTCT-TGCTTTAACGATCGCTTT---AAtttttttCTTTGTTTC 37919 || | | ||| || || || |||||| || | |||| | || | | || Sbjct 1346373 ATGGCATACCA-AAGCTGCTGTGCTTTTACAA---CTTTGCGGACACGACCCTGTTTCTC 1346318 Query 37920 GTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCAT--AATCCTGGACAT 37977 || | | |||| || | ||| || | |||| | ||| ||| | || || | Sbjct 1346317 ATAACTTTTGTATAGCTTCTCAAATTCCTCTCCCC--AAATCTCATCCAGGCCAAGAAAC 1346260 Query 37978 TCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCA 38037 || ||||||| | |||||| || | || | || || ||| |||||| | ||| Sbjct 1346259 TCATTTGGACACCTCGAAGACCAGTCCTGATTAGTCTCCACTAGTTTCATAAAGAGATCC 1346200 Query 38038 GGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTT 38097 | | ||| | ||| |||| || ||| | |||||| |||||| ||||| Sbjct 1346199 AGAATCCAAAGGGCAAGGAATAGGTCCCTGGCATGCTGTTCTTCCTTCCCTGTGTTCTTC 1346140 Query 38098 CTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCT 38157 |||| || || || || || ||| ||||| || || | ||||| | | | | Sbjct 1346139 TTTAAATCAAGGAACTCAAAGATGTCA-AATGCCAAGGCTCCAGGTAAATAGCAAATACA 1346081 Query 38158 CCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAAC 38217 || |||| || | || ||| | | ||| || |||||||| ||||| | ||| | | Sbjct 1346080 CCGGGTCACTTGTTCCCACCCCAGTCCACATACCTTACTGTGTTGTTATACACTCTCAGC 1346021 Query 38218 ATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGT 38277 |||||||| | | ||| || ||||| || || || | ||||| | || |||||| Sbjct 1346020 ATAGGTACAAGGCTATTGGAATTGCCATTAATCCCAGCAATATAGCTGCCAGTAGCTCAG 1345961 Query 38278 ATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTT 38337 ||| ||| | | | || ||||| || ||| || || |||| || || || ||| Sbjct 1345960 ATACAACTCACAGCAACACCAATTCCCCCAGCAGACTTGGAAATTAGTGCACACTGCTTT 1345901 Query 38338 AACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGAC 38397 | |||||| | || ||||| ||||||||||| || || || | |||| ||||| Sbjct 1345900 AGAGTATCATAAATGCCTTCAATACTGTCATCTTTCATACTCAGAAGGGAACAGCTAGAA 1345841 Query 38398 ATTTGAGGCAATGG--AGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATT 38455 |||||| ||| || || || || | | || || ||||| | ||||| | Sbjct 1345840 CGTTGAGG--GTGGTTGGTACCAGCATTGGAGGGCATGGGGGAGGCATGAGTAAACCAAT 1345783 Query 38456 TTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTA 38515 | || || | | || |||||||| || || |||| || || | |||||| || | Sbjct 1345782 TCTCAGAGAGAAGGTTGTATGTTTCAATAGCAGCATCAATGTCTTCTTTGTGAATCCCAA 1345723 Query 38516 GAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549 |||||||||||| | |||||||||||||||||| Sbjct 1345722 CAGATACCCTCATCAACATATGTTGTGGTCTTTC 1345689 >seq87 Length=11743621 Score = 219 bits (242), Expect = 4e-52 Identities = 551/831 (66%), Gaps = 11/831 (1%) Strand=Plus/Plus Query 11363 TCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATAT 11422 ||||| || ||||| | ||||| |||| |||| |||||||||| ||| ||||| | | Sbjct 8842179 TCGAAGAAGTTAGTTCTCCCTTCCTGTGAAATATTCTCCATAAAGTCAAATGGATTTTCT 8842238 Query 11423 ACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATA 11482 || |||| || || | | |||| | || | || ||| ||||| || || | || Sbjct 8842239 ACTCTGAATACCTTGTTAAAACCCAGTTCCAGCATTAGTCTCTCTGCTAC-AACGCAATG 8842297 Query 11483 TACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAA 11542 ||||| ||||||| |||||||| | ||||| | ||| | | || | || | Sbjct 8842298 TACTGCTTCATTAAAGTGCAATTCATTCTGATAAGCTTCACATGCAAGGCCTCAGTAAGG 8842357 Query 11543 AACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGT 11602 | ||||| |||||| |||| |||| ||| ||||| ||| | || | ||| Sbjct 8842358 AGCTCCTATTCTATCCTAACAGCATTAATAATTATTTCTTTTACTCTCTGCTCCAAAGGT 8842417 Query 11603 GGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTA 11662 |||| || ||||| ||| || || | ||| ||||| ||||||| || ||||| Sbjct 8842418 TTGTGTAGCAAGTGTTTGAACGCTATGCAGGTAAAGTCACAGTGTAAACTCTCATCTCTG 8842477 Query 11663 CTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAAT 11722 || || | |||||| ||| |||| | || ||||| ||||||||||| || | || ||| Sbjct 8842478 CTAATGAATTCATTGGAACATGTGAGGCCAGGCATTAATCCTCGTTTCTTGAGTCAGAAT 8842537 Query 11723 ATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTT 11782 || | ||||| |||||||||||||| ||||| || | | ||||| ||||| | | Sbjct 8842538 ATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTATTGGGGCAAAGGCTACATCACAC 8842597 Query 11783 TCTCCATA--TACCTTGTTGCT-AGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTT 11839 | ||||| || ||| || | ||||| | ||||||||| || ||||| ||| Sbjct 8842598 TTACCATAGGTAGCTTCTTTTTCCCCGATCCAATGCAAGGCCCAATCTGCCTTCTTCTTT 8842657 Query 11840 ACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACA 11899 || || ||||| ||| || || || || | | | |||| | |||| | | Sbjct 8842658 ACACAAGGCATTG-TTCAATGGCATTGAAGAGAAACTCCCTTTCCTTGGAATCTTTAATG 8842716 Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959 || || || | | | | | |||||||| ||||| || |||||||| || ||||| || Sbjct 8842717 TAAGTGTCAGTAAGGAGATTGTACATTTCAGAATGTATGTTTTCCATTGCAATTTGGAAG 8842776 Query 11960 CCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTC 12019 ||||||| ||| | || |||| | ||| || | ||||| || || || Sbjct 8842777 CCATAGAGACAGCAGGCTTCTGTAATCTGAACTTGTTGGCTAAATCGCACCAGCAAGTTT 8842836 Query 12020 TCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTT 12079 ||||| | || ||||| || | |||||| || || || | |||| | |||| ||| || Sbjct 8842837 TCATTCATTATGCCATCGCTTGCTGCAAAGAAAGCCAGAACATGTGATGTAAAATATCTT 8842896 Query 12080 TCGTCTTTAG---TTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCA 12136 ||||||| | | ||||| | | | || || || | ||| | || ||| Sbjct 8842897 ---TCTTTAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGATCCAGCTCCTCA 8842953 Query 12137 ACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGA 12187 | |||||||| | | | | || |||||||| | ||| ||||||||| Sbjct 8842954 GCAGTCCAAAAGGAAGGCTCAGCTTTCTTATACATCTGCCAAATATCATGA 8843004 >seq23 Length=24341844 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || |||||||| |||||||| | || ||||| ||||||||||| || Sbjct 8996045 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGCCCAGGCATTAATCCTCGTTTCTTG 8996104 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| ||||| || || |||||||| ||| Sbjct 8996105 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACGGCTGCAAAGGCT 8996164 Query 11774 ACTACTCTTTCTCC 11787 || || | ||||| Sbjct 8996165 ACAACACGCTCTCC 8996178 >seq9 Length=34412642 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| || | Sbjct 15801834 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGACCTCTCTTCT 15801775 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| || || || ||||| ||||| | Sbjct 15801774 TTAGCCAGAATATAGCAGCAAAAGATCCGGAGAAGAAAATCCCTTCTACAGCAGCAAAGG 15801715 Query 11772 CTACTACTCTTTCTCC 11787 |||| || ||||| || Sbjct 15801714 CTACCACCCTTTCCCC 15801699 >seq88 Length=11737398 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | || || || ||||| ||||| ||||||||| Sbjct 362825 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 362884 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | ||| |||| || || ||||||||||| || || || || | Sbjct 362885 GACTCATTATTCCCCAGTATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 362944 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 362945 CTGTTTCTTACACCAT 362960 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 |||| ||||| || |||||||| || ||||| | || |||| | | | |||| || Sbjct 360231 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCGATATGGATGT 360290 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982 ||| || ||||||||||| || || || ||||| || |||||||| | | || || Sbjct 360291 TCAGAGACTGACTTTGATCGATGAAAGCCCCTCTCTCAGCTGCCATCTTGAGTATGGTTT 360350 Query 36983 TTTGAGATATCTCCCAAACCGTTTTATATATTTGTTT 37019 ||||||| || ||||| || || ||||| | ||| || Sbjct 360351 TTTGAGAGATTTCCCACACTGTCTTATAAAGTTGCTT 360387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468487768971120