Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq102 277 2e-69
seq87 219 4e-52
seq23 120 3e-22
seq9 111 1e-19
seq88 102 8e-17
>seq102
Length=10627846
Score = 277 bits (306), Expect = 2e-69
Identities = 1142/1774 (64%), Gaps = 38/1774 (2%)
Strand=Plus/Minus
Query 36796 GTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGC 36855
||||| | || ||||| | | | | |||| || | ||||||||| ||||| || |
Sbjct 1347444 GTGAACTGGATTGGATTAGCCACTGGTCTTGTCCTTAAATAATACATCCCAGTCTTCAAA 1347385
Query 36856 CCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATA 36915
||| |||| || || || | |||||| || ||||| | || |||| | | | |||
Sbjct 1347384 CCCTGCTTCCAGCCATAGAACTACATACTAGTGAGTTTCCCATAGTTAGGCTCAGCGATA 1347325
Query 36916 TATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCG--GCTGCCATTTCTA 36973
| || ||| | || |||||||| || || || ||||| || ||| |||| | |
Sbjct 1347324 TGGATGTTCAGACACTGGCTTTGATCAATGAAAGCCCCTCTCTCTCAGCTTCCATCTTGA 1347265
Query 36974 AAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTA 37033
| || ||| ||||| || ||||| ||||| ||||| | ||| || | | ||| || |
Sbjct 1347264 ATATGGTTTTCTGAGAGATTTCCCACACCGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 1347205
Query 37034 AATC-TAAATGTT--GAATAGAACCATTATGTAACACAAT-TGTATTCTTTATGTCATTA 37089
|| | ||| | | ||||| ||||| | | | ||| ||| || || | || | |
Sbjct 1347204 TTTCATGTATGCTCTGGATAGAGCCATTGCATGAAATAATCTGTTTT-TTCACCTCTTCA 1347146
Query 37090 TTCCACATATTTCTACTTATTA-GTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATC 37148
||||||| | || || | || | ||| ||| || ||| ||||| |||| |||||| ||
Sbjct 1347145 TTCCACAAGTCCCT-CTCAGTAAGATCTTTCAGTAAGTGGGGATTCACAATCTGAAATTC 1347087
Query 37149 TCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATT 37208
||| || || ||||| | || || || ||| | ||||| |||||| |||||||||||||
Sbjct 1347086 TCCTGACAAGACTCTGCAAGTGTAGATGTTGGTGGTATACGGTTCAGTGGACTCATTATT 1347027
Query 37209 ACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAA 37268
| | ||| |||| || || ||||||||||| | || || || | || ||||| |
Sbjct 1347026 CCCCAGTATCTGAGCAGTTGAAGCAGTAGGCATCAGAGCAATAAGTAAACTGTTTCTTAC 1346967
Query 37269 TCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGT-TCT 37327
|||| | ||| ||| ||| | ||| | ||||||| ||||| || | |
Sbjct 1346966 ACCATACTTTGCAATCTTCTGTTTGACAAGTTTCTAGTCCCATAGGTCTGTAGGATAACA 1346907
Query 37328 TTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCAT 37387
|| |||| | | | || || | ||| || ||||||| | ||| || ||||
Sbjct 1346906 TT--CCACGT---ACACCAGAGGATTCTTTTGCTGACTGGAGAGCACTCATAGGTTTCAT 1346852
Query 37388 AAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTT 37447
| | || | || |||||||| ||||| | ||| || || ||||||| || |||
Sbjct 1346851 ATGAGCCATGTTCCTTGGCTAGTTCACAACTGGCTTCCAGGGCTCCATAATAAATGATTT 1346792
Query 37448 CGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATA 37507
| ||||| || |||| |||| | || ||| || || | | ||| || | |
Sbjct 1346791 CAAAAATATGCTTATTCAATAACTGGGCATCTGGACTCTCAGAAGGATACTTCATCAGGA 1346732
Query 37508 TAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATC 37567
|||| |||| |||| ||| || || || | || ||||| ||| | ||| | |||
Sbjct 1346731 TAAAAGCATCTGCCAGACCTTGTACCCCAGTTCCAATGGGGTGATGGCTTTTACTTGAT- 1346673
Query 37568 TAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTA 37627
| | |||| | || | ||||| ||||| | |||||||| | || | || |
Sbjct 1346672 AACAATGTTCTGGAATAGGGTGGTAATTAATATCAGTAATTTTATTCAAGTTATGGACAA 1346613
Query 37628 GTATTTTCGT-AATTATTCTCAACTTGTCGAA--CATAAATACGTTATTAT-TAACAAAT 37683
| ||| || | || || ||||| | || |||| | ||| | || | ||| |
Sbjct 1346612 CAACTTTGGTGACTTCAGCT-AACTTCTTAAAGTCATATGTGTGTTCTGATGTGACATAC 1346554
Query 37684 TTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGT 37743
|| ||| | | || | | ||||| || ||||| ||||||| | || || | | |
Sbjct 1346553 ATATTCAGGGCCAGGGAAGCCAAGTTACAAACTGCAACCTCATCTTTGCTAGTATACTCT 1346494
Query 37744 ATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTT 37803
| || ||||| || || || || || | || ||||||| || | ||| ||
Sbjct 1346493 ACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCCGGTTGCTCTTC 1346434
Query 37804 TTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATA 37863
|||| | ||||| || || || || ||| | || ||| ||| |||| ||| |
Sbjct 1346433 CAATTATAGGAATCCTTGTAGAGCATGTACAGAGTACCTGTCTCTGCCTGAGACTCAGTG 1346374
Query 37864 ATAGATTTCCATAAACTTCT-TGCTTTAACGATCGCTTT---AAtttttttCTTTGTTTC 37919
|| | | ||| || || || |||||| || | |||| | || | | ||
Sbjct 1346373 ATGGCATACCA-AAGCTGCTGTGCTTTTACAA---CTTTGCGGACACGACCCTGTTTCTC 1346318
Query 37920 GTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCAT--AATCCTGGACAT 37977
|| | | |||| || | ||| || | |||| | ||| ||| | || || |
Sbjct 1346317 ATAACTTTTGTATAGCTTCTCAAATTCCTCTCCCC--AAATCTCATCCAGGCCAAGAAAC 1346260
Query 37978 TCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCA 38037
|| ||||||| | |||||| || | || | || || ||| |||||| | |||
Sbjct 1346259 TCATTTGGACACCTCGAAGACCAGTCCTGATTAGTCTCCACTAGTTTCATAAAGAGATCC 1346200
Query 38038 GGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTT 38097
| | ||| | ||| |||| || ||| | |||||| |||||| |||||
Sbjct 1346199 AGAATCCAAAGGGCAAGGAATAGGTCCCTGGCATGCTGTTCTTCCTTCCCTGTGTTCTTC 1346140
Query 38098 CTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCT 38157
|||| || || || || || ||| ||||| || || | ||||| | | | |
Sbjct 1346139 TTTAAATCAAGGAACTCAAAGATGTCA-AATGCCAAGGCTCCAGGTAAATAGCAAATACA 1346081
Query 38158 CCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAAC 38217
|| |||| || | || ||| | | ||| || |||||||| ||||| | ||| | |
Sbjct 1346080 CCGGGTCACTTGTTCCCACCCCAGTCCACATACCTTACTGTGTTGTTATACACTCTCAGC 1346021
Query 38218 ATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGT 38277
|||||||| | | ||| || ||||| || || || | ||||| | || ||||||
Sbjct 1346020 ATAGGTACAAGGCTATTGGAATTGCCATTAATCCCAGCAATATAGCTGCCAGTAGCTCAG 1345961
Query 38278 ATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTT 38337
||| ||| | | | || ||||| || ||| || || |||| || || || |||
Sbjct 1345960 ATACAACTCACAGCAACACCAATTCCCCCAGCAGACTTGGAAATTAGTGCACACTGCTTT 1345901
Query 38338 AACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGAC 38397
| |||||| | || ||||| ||||||||||| || || || | |||| |||||
Sbjct 1345900 AGAGTATCATAAATGCCTTCAATACTGTCATCTTTCATACTCAGAAGGGAACAGCTAGAA 1345841
Query 38398 ATTTGAGGCAATGG--AGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATT 38455
|||||| ||| || || || || | | || || ||||| | ||||| |
Sbjct 1345840 CGTTGAGG--GTGGTTGGTACCAGCATTGGAGGGCATGGGGGAGGCATGAGTAAACCAAT 1345783
Query 38456 TTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTA 38515
| || || | | || |||||||| || || |||| || || | |||||| || |
Sbjct 1345782 TCTCAGAGAGAAGGTTGTATGTTTCAATAGCAGCATCAATGTCTTCTTTGTGAATCCCAA 1345723
Query 38516 GAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549
|||||||||||| | ||||||||||||||||||
Sbjct 1345722 CAGATACCCTCATCAACATATGTTGTGGTCTTTC 1345689
>seq87
Length=11743621
Score = 219 bits (242), Expect = 4e-52
Identities = 551/831 (66%), Gaps = 11/831 (1%)
Strand=Plus/Plus
Query 11363 TCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATAT 11422
||||| || ||||| | ||||| |||| |||| |||||||||| ||| ||||| | |
Sbjct 8842179 TCGAAGAAGTTAGTTCTCCCTTCCTGTGAAATATTCTCCATAAAGTCAAATGGATTTTCT 8842238
Query 11423 ACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATA 11482
|| |||| || || | | |||| | || | || ||| ||||| || || | ||
Sbjct 8842239 ACTCTGAATACCTTGTTAAAACCCAGTTCCAGCATTAGTCTCTCTGCTAC-AACGCAATG 8842297
Query 11483 TACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAA 11542
||||| ||||||| |||||||| | ||||| | ||| | | || | || |
Sbjct 8842298 TACTGCTTCATTAAAGTGCAATTCATTCTGATAAGCTTCACATGCAAGGCCTCAGTAAGG 8842357
Query 11543 AACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGT 11602
| ||||| |||||| |||| |||| ||| ||||| ||| | || | |||
Sbjct 8842358 AGCTCCTATTCTATCCTAACAGCATTAATAATTATTTCTTTTACTCTCTGCTCCAAAGGT 8842417
Query 11603 GGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTA 11662
|||| || ||||| ||| || || | ||| ||||| ||||||| || |||||
Sbjct 8842418 TTGTGTAGCAAGTGTTTGAACGCTATGCAGGTAAAGTCACAGTGTAAACTCTCATCTCTG 8842477
Query 11663 CTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAAT 11722
|| || | |||||| ||| |||| | || ||||| ||||||||||| || | || |||
Sbjct 8842478 CTAATGAATTCATTGGAACATGTGAGGCCAGGCATTAATCCTCGTTTCTTGAGTCAGAAT 8842537
Query 11723 ATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTT 11782
|| | ||||| |||||||||||||| ||||| || | | ||||| ||||| | |
Sbjct 8842538 ATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTATTGGGGCAAAGGCTACATCACAC 8842597
Query 11783 TCTCCATA--TACCTTGTTGCT-AGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTT 11839
| ||||| || ||| || | ||||| | ||||||||| || ||||| |||
Sbjct 8842598 TTACCATAGGTAGCTTCTTTTTCCCCGATCCAATGCAAGGCCCAATCTGCCTTCTTCTTT 8842657
Query 11840 ACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACA 11899
|| || ||||| ||| || || || || | | | |||| | |||| | |
Sbjct 8842658 ACACAAGGCATTG-TTCAATGGCATTGAAGAGAAACTCCCTTTCCTTGGAATCTTTAATG 8842716
Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959
|| || || | | | | | |||||||| ||||| || |||||||| || ||||| ||
Sbjct 8842717 TAAGTGTCAGTAAGGAGATTGTACATTTCAGAATGTATGTTTTCCATTGCAATTTGGAAG 8842776
Query 11960 CCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTC 12019
||||||| ||| | || |||| | ||| || | ||||| || || ||
Sbjct 8842777 CCATAGAGACAGCAGGCTTCTGTAATCTGAACTTGTTGGCTAAATCGCACCAGCAAGTTT 8842836
Query 12020 TCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTT 12079
||||| | || ||||| || | |||||| || || || | |||| | |||| ||| ||
Sbjct 8842837 TCATTCATTATGCCATCGCTTGCTGCAAAGAAAGCCAGAACATGTGATGTAAAATATCTT 8842896
Query 12080 TCGTCTTTAG---TTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCA 12136
||||||| | | ||||| | | | || || || | ||| | || |||
Sbjct 8842897 ---TCTTTAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGATCCAGCTCCTCA 8842953
Query 12137 ACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGA 12187
| |||||||| | | | | || |||||||| | ||| |||||||||
Sbjct 8842954 GCAGTCCAAAAGGAAGGCTCAGCTTTCTTATACATCTGCCAAATATCATGA 8843004
>seq23
Length=24341844
Score = 120 bits (132), Expect = 3e-22
Identities = 107/134 (80%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713
|| ||||| || || |||||||| |||||||| | || ||||| ||||||||||| ||
Sbjct 8996045 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGCCCAGGCATTAATCCTCGTTTCTTG 8996104
Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773
| ||| ||||| | ||||| |||||||||||||| ||||| || || |||||||| |||
Sbjct 8996105 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACGGCTGCAAAGGCT 8996164
Query 11774 ACTACTCTTTCTCC 11787
|| || | |||||
Sbjct 8996165 ACAACACGCTCTCC 8996178
>seq9
Length=34412642
Score = 111 bits (122), Expect = 1e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711
|||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| || |
Sbjct 15801834 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGACCTCTCTTCT 15801775
Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771
||| ||| |||||||||||||| || || || ||||| || || || ||||| ||||| |
Sbjct 15801774 TTAGCCAGAATATAGCAGCAAAAGATCCGGAGAAGAAAATCCCTTCTACAGCAGCAAAGG 15801715
Query 11772 CTACTACTCTTTCTCC 11787
|||| || ||||| ||
Sbjct 15801714 CTACCACCCTTTCCCC 15801699
>seq88
Length=11737398
Score = 102 bits (112), Expect = 8e-17
Identities = 104/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197
|||||||| ||||| || || ||||| | || || || ||||| ||||| |||||||||
Sbjct 362825 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTGCTGGTATAAGGTTCAATG 362884
Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257
||||||||||| | | ||| |||| || || ||||||||||| || || || || |
Sbjct 362885 GACTCATTATTCCCCAGTATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 362944
Query 37258 CTATTTCTCAATCCAT 37273
|| ||||| | ||||
Sbjct 362945 CTGTTTCTTACACCAT 362960
Score = 89.7 bits (98), Expect = 5e-13
Identities = 114/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922
|||| ||||| || |||||||| || ||||| | || |||| | | | |||| ||
Sbjct 360231 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCGATATGGATGT 360290
Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982
||| || ||||||||||| || || || ||||| || |||||||| | | || ||
Sbjct 360291 TCAGAGACTGACTTTGATCGATGAAAGCCCCTCTCTCAGCTGCCATCTTGAGTATGGTTT 360350
Query 36983 TTTGAGATATCTCCCAAACCGTTTTATATATTTGTTT 37019
||||||| || ||||| || || ||||| | ||| ||
Sbjct 360351 TTTGAGAGATTTCCCACACTGTCTTATAAAGTTGCTT 360387
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468487768971120
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