Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq256 156 4e-33
seq4 152 4e-32
seq16 116 3e-21
>seq256
Length=2651488
Score = 156 bits (172), Expect = 4e-33
Identities = 143/181 (79%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048
||| ||| |||| ||| || |||| || || || |||||||||||||||||||| || |
Sbjct 779454 TCAAGCCGGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAAG 779395
Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108
| ||||| |||||||||||| | ||||||||||||||||||||||||||||| ||
Sbjct 779394 GCACCCCCAGGCCCATGTCGCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCA 779335
Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGG 21168
|||| || ||||| || | |||| || ||||| || |||||| | | ||||| ||||
Sbjct 779334 CCACATAGAACTGGCAAAGGGCGTGGCAGGGAGGCAGCGCCATCTGAGGAAGGTCTGCGG 779275
Query 21169 G 21169
|
Sbjct 779274 G 779274
>seq4
Length=36583390
Score = 152 bits (168), Expect = 4e-32
Identities = 447/677 (66%), Gaps = 9/677 (1%)
Strand=Plus/Minus
Query 20907 CTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAG 20966
||| | ||||||| |||||| ||| ||| || | | ||| | || || |||||
Sbjct 19718302 CTCTGGAGCTGAACTTTCAGGGGCTCAGTGTGATTCTGGAAAATAGGTGCATCTCCCAAA 19718243
Query 20967 GTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGG 21026
|| | ||||||| | || ||||||| ||| ||| |||| | | || || | ||
Sbjct 19718242 GTATATTCAAAGTCACGTGGCTTCAGGCCTATGATGTGTGCGA-CTG-TAGGTGAACTGG 19718185
Query 21027 GCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGC 21086
|| |||||||| ||| | || || ||||| |||||||||| | |||||||| ||||||
Sbjct 19718184 GCATAGCTGGCAATGGTGAAAGGTACCCCCAGGCCCATGTATCCTGACCTCTGCTACAGC 19718125
Query 21087 TGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGA 21146
||||||| |||||| | |||| | ||||| || | | || || |||| ||
Sbjct 19718124 TGGCAGGTCAGCTCACTGTTCACCACAGAGAACTGGCAAAGGGCATGGCAGGGAGTTAGC 19718065
Query 21147 GCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGC 21206
||| || | | ||| | || ||| | |||||||| | ||| | | | |||
Sbjct 19718064 GCCGTCTGAGGAAGGCCTTGTGGATTCTAAGCGCACATGATGATTCTTCTGTGTCAGGGT 19718005
Query 21207 CGCCTGTTAATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGT-T 21265
| | || ||| || || | |||||||||| || || ||||| | | |
Sbjct 19718004 TGGTT-TTGATTGTGTCAGTAACCTTTTGCAGCTGGTCTACTCCTTGACCTACACCATCT 19717946
Query 21266 GGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCC 21325
| || | | | || || ||| ||||||| |||||||| || || || || || ||
Sbjct 19717945 GAATTCAGATCTT-TATATTCTGCCTCAAAATGCCTCCACTGAAAGCCATAAACTGGGCC 19717887
Query 21326 CAGATCGCCCTCGCGGCGGTCCCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGT 21384
||| || || | | ||| ||| | || | |||||||| | ||||||||
Sbjct 19717886 TGAATCTCCTTCTTCTCAGGTGAAGAATCCCAG-GCTGTCCAAAAAGTCTCGGGACCCAC 19717828
Query 21385 GCGCGTCCCAAATTTTTACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGA 21444
|| ||||| || || || || | |||||||| | | | |||||| || |||
Sbjct 19717827 TGGCATCCCAGATCTTCACTCCCTTGGAAGACAGTTCTCTAGCATTGGTGGATCCT-TGA 19717769
Query 21445 TAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAG 21504
|| |||||||||||| ||||| || || | |||| ||| | ||||| || | |||||
Sbjct 19717768 TACGCCACAGCAACTCTTCCACAACACCTGTGCAAA-CACACGCTTGGTTGTCAGCAGAG 19717710
Query 21505 GAAACTCGTCCCTGAGGTTATATCGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGC 21564
||||||| || || ||||| || | ||||| | || |||| || | ||| || ||
Sbjct 19717709 GAAACTCATCTCTCAGGTTGTAGTGTGCCTGCATGCCAAACATGGGCAGGGTACCGGTGC 19717650
Query 21565 CCGTCCTGTCCTCCCTC 21581
|| | | ||||||| ||
Sbjct 19717649 CCATGCAGTCCTCCTTC 19717633
>seq16
Length=28134011
Score = 116 bits (128), Expect = 3e-21
Identities = 140/188 (74%), Gaps = 2/188 (1%)
Strand=Plus/Plus
Query 20913 AGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGC 20972
||||||| |||||| |||| ||| || ||||| || || || ||||| || |||
Sbjct 9569112 AGCTGAACTTTCAGGGGCTCAATGTGATTCAGGTAAATATGTGCATCTCCCAAAGTATGC 9569171
Query 20973 ACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAG 21032
|||||||| || || |||||| | | | ||| | | | || || || ||| | ||
Sbjct 9569172 ACAAAGTCACCTGGCTTCAGGCTCATTATGTGTTTGGTTATGTAGGTGAGCAGGTGGAAG 9569231
Query 21033 CTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAG 21092
||||| ||||| || || ||||| ||||||||||| | ||| ||||||| |||||||||
Sbjct 9569232 CTGGCCATGTTGAAAGGCACCCC-AGGCCCATGTCTCCTGACTTCTGGTA-AGCTGGCAG 9569289
Query 21093 GACAGCTC 21100
||||||||
Sbjct 9569290 GACAGCTC 9569297
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427743034913040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |