Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq256 156 4e-33 seq4 152 4e-32 seq16 116 3e-21 >seq256 Length=2651488 Score = 156 bits (172), Expect = 4e-33 Identities = 143/181 (79%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||| ||| |||| ||| || |||| || || || |||||||||||||||||||| || | Sbjct 779454 TCAAGCCGGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAAG 779395 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | ||||| |||||||||||| | ||||||||||||||||||||||||||||| || Sbjct 779394 GCACCCCCAGGCCCATGTCGCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCA 779335 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGG 21168 |||| || ||||| || | |||| || ||||| || |||||| | | ||||| |||| Sbjct 779334 CCACATAGAACTGGCAAAGGGCGTGGCAGGGAGGCAGCGCCATCTGAGGAAGGTCTGCGG 779275 Query 21169 G 21169 | Sbjct 779274 G 779274 >seq4 Length=36583390 Score = 152 bits (168), Expect = 4e-32 Identities = 447/677 (66%), Gaps = 9/677 (1%) Strand=Plus/Minus Query 20907 CTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAG 20966 ||| | ||||||| |||||| ||| ||| || | | ||| | || || ||||| Sbjct 19718302 CTCTGGAGCTGAACTTTCAGGGGCTCAGTGTGATTCTGGAAAATAGGTGCATCTCCCAAA 19718243 Query 20967 GTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGG 21026 || | ||||||| | || ||||||| ||| ||| |||| | | || || | || Sbjct 19718242 GTATATTCAAAGTCACGTGGCTTCAGGCCTATGATGTGTGCGA-CTG-TAGGTGAACTGG 19718185 Query 21027 GCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGC 21086 || |||||||| ||| | || || ||||| |||||||||| | |||||||| |||||| Sbjct 19718184 GCATAGCTGGCAATGGTGAAAGGTACCCCCAGGCCCATGTATCCTGACCTCTGCTACAGC 19718125 Query 21087 TGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGA 21146 ||||||| |||||| | |||| | ||||| || | | || || |||| || Sbjct 19718124 TGGCAGGTCAGCTCACTGTTCACCACAGAGAACTGGCAAAGGGCATGGCAGGGAGTTAGC 19718065 Query 21147 GCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGC 21206 ||| || | | ||| | || ||| | |||||||| | ||| | | | ||| Sbjct 19718064 GCCGTCTGAGGAAGGCCTTGTGGATTCTAAGCGCACATGATGATTCTTCTGTGTCAGGGT 19718005 Query 21207 CGCCTGTTAATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGT-T 21265 | | || ||| || || | |||||||||| || || ||||| | | | Sbjct 19718004 TGGTT-TTGATTGTGTCAGTAACCTTTTGCAGCTGGTCTACTCCTTGACCTACACCATCT 19717946 Query 21266 GGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCC 21325 | || | | | || || ||| ||||||| |||||||| || || || || || || Sbjct 19717945 GAATTCAGATCTT-TATATTCTGCCTCAAAATGCCTCCACTGAAAGCCATAAACTGGGCC 19717887 Query 21326 CAGATCGCCCTCGCGGCGGTCCCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGT 21384 ||| || || | | ||| ||| | || | |||||||| | |||||||| Sbjct 19717886 TGAATCTCCTTCTTCTCAGGTGAAGAATCCCAG-GCTGTCCAAAAAGTCTCGGGACCCAC 19717828 Query 21385 GCGCGTCCCAAATTTTTACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGA 21444 || ||||| || || || || | |||||||| | | | |||||| || ||| Sbjct 19717827 TGGCATCCCAGATCTTCACTCCCTTGGAAGACAGTTCTCTAGCATTGGTGGATCCT-TGA 19717769 Query 21445 TAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAG 21504 || |||||||||||| ||||| || || | |||| ||| | ||||| || | ||||| Sbjct 19717768 TACGCCACAGCAACTCTTCCACAACACCTGTGCAAA-CACACGCTTGGTTGTCAGCAGAG 19717710 Query 21505 GAAACTCGTCCCTGAGGTTATATCGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGC 21564 ||||||| || || ||||| || | ||||| | || |||| || | ||| || || Sbjct 19717709 GAAACTCATCTCTCAGGTTGTAGTGTGCCTGCATGCCAAACATGGGCAGGGTACCGGTGC 19717650 Query 21565 CCGTCCTGTCCTCCCTC 21581 || | | ||||||| || Sbjct 19717649 CCATGCAGTCCTCCTTC 19717633 >seq16 Length=28134011 Score = 116 bits (128), Expect = 3e-21 Identities = 140/188 (74%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 20913 AGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGC 20972 ||||||| |||||| |||| ||| || ||||| || || || ||||| || ||| Sbjct 9569112 AGCTGAACTTTCAGGGGCTCAATGTGATTCAGGTAAATATGTGCATCTCCCAAAGTATGC 9569171 Query 20973 ACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAG 21032 |||||||| || || |||||| | | | ||| | | | || || || ||| | || Sbjct 9569172 ACAAAGTCACCTGGCTTCAGGCTCATTATGTGTTTGGTTATGTAGGTGAGCAGGTGGAAG 9569231 Query 21033 CTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAG 21092 ||||| ||||| || || ||||| ||||||||||| | ||| ||||||| ||||||||| Sbjct 9569232 CTGGCCATGTTGAAAGGCACCCC-AGGCCCATGTCTCCTGACTTCTGGTA-AGCTGGCAG 9569289 Query 21093 GACAGCTC 21100 |||||||| Sbjct 9569290 GACAGCTC 9569297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427743034913040