Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq175 91.5 1e-13
seq40 86.0 6e-12
seq131 84.2 2e-11
>seq175
Length=5584636
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGT-GCTCGAGTCTTCGAGCTG 139620
|||| |||||||| ||||||||||| || || || || | || | ||||| || |
Sbjct 1836501 TGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAAACAAAGTAGGTCCA-TCTTCCAGTTT 1836443
Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680
||| |||||| ||||||| | || ||||| |||| || |||||||| || ||| ||
Sbjct 1836442 TTTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAGAAATTCCTTCTTTATCCTGGATCTT 1836383
Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740
||||| | ||| | ||| || | ||| || |||||| || | ||||| || |
Sbjct 1836382 GGCTTTTACATTTTCTATTGTATCTGAGGGTTCATCCTCAAGAGTGATGGTCTTCCCCAT 1836323
Query 139741 CAACGTTTTTACGAATATTTGCAT 139764
| |||||||| || || |||||
Sbjct 1836322 TAGGGTTTTTACAAAAATGTGCAT 1836299
>seq40
Length=19935044
Score = 86.0 bits (94), Expect = 6e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
||||| ||||| || || ||| |||| || | ||||| || ||||| |||||||||||
Sbjct 1219193 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTA 1219134
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| ||| || |||| | || | ||||| |||| |||||||| | ||| |
Sbjct 1219133 TCCTGGATCTTAGCCTTTACGTTCTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATG 1219074
Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||| || || | || |||||||| ||||||||
Sbjct 1219073 GTCTTTCCCGTTAGGGTCTTTACGAAAATTTGCAT 1219039
>seq131
Length=8015323
Score = 84.2 bits (92), Expect = 2e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 139619 TGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATT 139678
||||| |||||| |||||| | ||||| || ||||| |||||||| ||||| |||
Sbjct 2520078 TGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATC 2520137
Query 139679 TTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCG 139738
||| || | | || | ||||| ||||||||||||||| ||| | || || ||
Sbjct 2520138 TTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTACCC 2520197
Query 139739 GTCAACGTTTTTACGAATATTTGCAT 139764
|| || ||||| || || || |||||
Sbjct 2520198 GTTAAGGTTTTCACAAAGATCTGCAT 2520223
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496024792341600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |