Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq87 221 1e-52 seq23 114 1e-20 >seq87 Length=11743621 Score = 221 bits (244), Expect = 1e-52 Identities = 556/831 (67%), Gaps = 22/831 (3%) Strand=Plus/Plus Query 13596 ACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAAT 13655 ||||| || || |||||||||||| | |||||| |||| ||||| |||||||| |||||| Sbjct 8842170 ACTCTCTTCTCGAAGAAGTTAGTTCTCCCTTCCTGTGAAATATTCTCCATAAAGTCAAAT 8842229 Query 13656 GGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATA 13715 |||||| | | || || || | | |||| ||||| | | || ||| || || | | Sbjct 8842230 GGATTTTCTACTCTGAATACCTTGTTAAAACCCAGTTCCAGCATTAGTCTCTCTGCTACA 8842289 Query 13716 AACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATA 13775 | | |||| || || ||||||| |||||||| | || || || ||| | | Sbjct 8842290 A-CGCAATGTACTGCTTCATTAAAGTGCAATTCATTCTGATAAGCTTCACATGCAAGGCC 8842348 Query 13776 TTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTG-TAATAATCTC 13834 | || | | || | |||||| ||||| | | ||||| ||| | || |||| Sbjct 8842349 TCAGTAAGGAGCTCCTATTCTATCCTAACAGCAT---TAATAATTATTTCTTTTACTCTC 8842405 Query 13835 AT-TAGAAGGAGGATATTTTAGA---TGTTTAAAAATTAAACACGCAAAATCACAATGAA 13890 | || ||| | | ||| ||||| || || || | ||| ||||| || | Sbjct 8842406 TGCTCCAA--AGGTTTGTGTAGCAAGTGTTTGAACGCTATGCAGGTAAAGTCACAGTGTA 8842463 Query 13891 GGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtt 13950 | ||||||||| ||||| | ||| || ||| |||| | || ||||| |||||||||| Sbjct 8842464 AACTCTCATCTCTGCTAATGAATTCATTGGAACATGTGAGGCCAGGCATTAATCCTCGTT 8842523 Query 13951 tttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAA 14010 | || | || ||||| | ||||| || || |||||||| ||||| || | || |||| Sbjct 8842524 TCTTGAGTCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTATTGGGGCAA 8842583 Query 14011 ACGCTATTAATCGTTCT--CCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCA 14068 | |||| ||| || ||| | | |||| ||| | | ||||| | ||||| Sbjct 8842584 AGGCTAC--ATCACACTTACCATAGGTAGCTTCTTTTTCCCCGATCCAATGCAAGGCCCA 8842641 Query 14069 TTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTC 14128 || | || || || | | || ||||||| |||| ||||| || | | | ||| | || Sbjct 8842642 ATCTGCCTTCTTCTTTACACAAGGCATTGTT-CAATGGCATTGAAGAGAAACTCCCTTTC 8842700 Query 14129 TTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTC 14188 || | | | |||||| || ||| |||| | | ||||||||||| ||||||||||| Sbjct 8842701 CTTGGAATCTTTAATGTAAGTGTCAGTAAGGAGATTGTACATTTCAGAATGTATGTTTTC 8842760 Query 14189 CATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAA 14248 ||| || || || || ||||| | || | ||||| | || |||| | ||| Sbjct 8842761 CATTGCAATTTGGAAGCCATAGAGACAGCAGGCTTCTGTAATCTGAACTTGTTGGCTAAA 8842820 Query 14249 TCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC--AATATG 14306 || | ||| |||||||| | ||| ||||| || |||||||| || ||| || ||| Sbjct 8842821 TCGCACCAGCAAGTTTTCATTCATTATGCCATCGCTTGCTGCAAAGAAAGCCAGAACATG 8842880 Query 14307 TTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT-CGGATAAATCCTTAGA 14365 | | |||| ||| |||| | || || || ||| | | || | ||||| || Sbjct 8842881 TGAT--GTAAAATATCTTTCTTTAGGCTTCAGGGCTTCCCAGTGCTGA-ATGTCCTTGGA 8842937 Query 14366 AAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACAT 14416 |||||| | || ||| | |||||||| || ||||||| |||||||| Sbjct 8842938 AAGATCCAGCTCCTCAGCAGTCCAAAAGGAAGGCTCAGCTTTCTTATACAT 8842988 >seq23 Length=24341844 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || |||||||| | || ||||| ||||||||||| | Sbjct 8996043 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGCCCAGGCATTAATCCTCGTTTCT 8996102 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || || |||||||| ||||| || || || ||||| | Sbjct 8996103 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACGGCTGCAAAGG 8996162 Query 14014 CTATTAATCGTTCTCC 14029 ||| | || ||||| Sbjct 8996163 CTACAACACGCTCTCC 8996178 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 || || ||| |||| || | |||| ||| || | | | || || || ||||| | Sbjct 8994258 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGGCTGGACATCACTCCCATCCTC 8994317 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 ||||| || | ||||| || |||||||||||||| || ||||| ||||| ||||| ||| Sbjct 8994318 TGATACTCGCCCACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAATATTCTCC 8994377 Query 13644 ATAAAATCAAATGGATTT 13661 ||||| ||||| |||||| Sbjct 8994378 ATAAAGTCAAACGGATTT 8994395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479690083498200