Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq87 221 1e-52
seq23 114 1e-20
>seq87
Length=11743621
Score = 221 bits (244), Expect = 1e-52
Identities = 556/831 (67%), Gaps = 22/831 (3%)
Strand=Plus/Plus
Query 13596 ACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAAT 13655
||||| || || |||||||||||| | |||||| |||| ||||| |||||||| ||||||
Sbjct 8842170 ACTCTCTTCTCGAAGAAGTTAGTTCTCCCTTCCTGTGAAATATTCTCCATAAAGTCAAAT 8842229
Query 13656 GGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATA 13715
|||||| | | || || || | | |||| ||||| | | || ||| || || | |
Sbjct 8842230 GGATTTTCTACTCTGAATACCTTGTTAAAACCCAGTTCCAGCATTAGTCTCTCTGCTACA 8842289
Query 13716 AACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATA 13775
| | |||| || || ||||||| |||||||| | || || || ||| | |
Sbjct 8842290 A-CGCAATGTACTGCTTCATTAAAGTGCAATTCATTCTGATAAGCTTCACATGCAAGGCC 8842348
Query 13776 TTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTG-TAATAATCTC 13834
| || | | || | |||||| ||||| | | ||||| ||| | || ||||
Sbjct 8842349 TCAGTAAGGAGCTCCTATTCTATCCTAACAGCAT---TAATAATTATTTCTTTTACTCTC 8842405
Query 13835 AT-TAGAAGGAGGATATTTTAGA---TGTTTAAAAATTAAACACGCAAAATCACAATGAA 13890
| || ||| | | ||| ||||| || || || | ||| ||||| || |
Sbjct 8842406 TGCTCCAA--AGGTTTGTGTAGCAAGTGTTTGAACGCTATGCAGGTAAAGTCACAGTGTA 8842463
Query 13891 GGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtt 13950
| ||||||||| ||||| | ||| || ||| |||| | || ||||| ||||||||||
Sbjct 8842464 AACTCTCATCTCTGCTAATGAATTCATTGGAACATGTGAGGCCAGGCATTAATCCTCGTT 8842523
Query 13951 tttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAA 14010
| || | || ||||| | ||||| || || |||||||| ||||| || | || ||||
Sbjct 8842524 TCTTGAGTCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTATTGGGGCAA 8842583
Query 14011 ACGCTATTAATCGTTCT--CCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCA 14068
| |||| ||| || ||| | | |||| ||| | | ||||| | |||||
Sbjct 8842584 AGGCTAC--ATCACACTTACCATAGGTAGCTTCTTTTTCCCCGATCCAATGCAAGGCCCA 8842641
Query 14069 TTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTC 14128
|| | || || || | | || ||||||| |||| ||||| || | | | ||| | ||
Sbjct 8842642 ATCTGCCTTCTTCTTTACACAAGGCATTGTT-CAATGGCATTGAAGAGAAACTCCCTTTC 8842700
Query 14129 TTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTC 14188
|| | | | |||||| || ||| |||| | | ||||||||||| |||||||||||
Sbjct 8842701 CTTGGAATCTTTAATGTAAGTGTCAGTAAGGAGATTGTACATTTCAGAATGTATGTTTTC 8842760
Query 14189 CATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAA 14248
||| || || || || ||||| | || | ||||| | || |||| | |||
Sbjct 8842761 CATTGCAATTTGGAAGCCATAGAGACAGCAGGCTTCTGTAATCTGAACTTGTTGGCTAAA 8842820
Query 14249 TCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC--AATATG 14306
|| | ||| |||||||| | ||| ||||| || |||||||| || ||| || |||
Sbjct 8842821 TCGCACCAGCAAGTTTTCATTCATTATGCCATCGCTTGCTGCAAAGAAAGCCAGAACATG 8842880
Query 14307 TTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT-CGGATAAATCCTTAGA 14365
| | |||| ||| |||| | || || || ||| | | || | ||||| ||
Sbjct 8842881 TGAT--GTAAAATATCTTTCTTTAGGCTTCAGGGCTTCCCAGTGCTGA-ATGTCCTTGGA 8842937
Query 14366 AAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACAT 14416
|||||| | || ||| | |||||||| || ||||||| ||||||||
Sbjct 8842938 AAGATCCAGCTCCTCAGCAGTCCAAAAGGAAGGCTCAGCTTTCTTATACAT 8842988
>seq23
Length=24341844
Score = 114 bits (126), Expect = 1e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953
|||||||||| ||||||||||| || |||||||| | || ||||| ||||||||||| |
Sbjct 8996043 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGCCCAGGCATTAATCCTCGTTTCT 8996102
Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013
| | ||| ||||| | ||||| || || |||||||| ||||| || || || ||||| |
Sbjct 8996103 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACGGCTGCAAAGG 8996162
Query 14014 CTATTAATCGTTCTCC 14029
||| | || |||||
Sbjct 8996163 CTACAACACGCTCTCC 8996178
Score = 91.5 bits (100), Expect = 1e-13
Identities = 103/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583
|| || ||| |||| || | |||| ||| || | | | || || || ||||| |
Sbjct 8994258 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGGCTGGACATCACTCCCATCCTC 8994317
Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643
||||| || | ||||| || |||||||||||||| || ||||| ||||| ||||| |||
Sbjct 8994318 TGATACTCGCCCACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAATATTCTCC 8994377
Query 13644 ATAAAATCAAATGGATTT 13661
||||| ||||| ||||||
Sbjct 8994378 ATAAAGTCAAACGGATTT 8994395
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479690083498200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |