Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq87 199 4e-46
seq23 111 2e-19
>seq87
Length=11743621
Score = 199 bits (220), Expect = 4e-46
Identities = 549/830 (66%), Gaps = 20/830 (2%)
Strand=Plus/Plus
Query 13384 ACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAAT 13443
||||| || || || ||||||||| | |||||| |||| ||||| |||||||| || |||
Sbjct 8842170 ACTCTCTTCTCGAAGAAGTTAGTTCTCCCTTCCTGTGAAATATTCTCCATAAAGTCAAAT 8842229
Query 13444 GGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATA 13503
|||||| | | || || || | | |||| ||||| | | || ||| || || | |
Sbjct 8842230 GGATTTTCTACTCTGAATACCTTGTTAAAACCCAGTTCCAGCATTAGTCTCTCTGCTACA 8842289
Query 13504 AACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATA 13563
| | |||| || || ||||||| |||||||| | || || || ||| | |
Sbjct 8842290 A-CGCAATGTACTGCTTCATTAAAGTGCAATTCATTCTGATAAGCTTCACATGCAAGGCC 8842348
Query 13564 TTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCT-TAATAATGTC 13622
| ||| | | || | |||||| ||||| | | ||||| || | | || | ||
Sbjct 8842349 TCAGTAAGGAGCTCCTATTCTATCCTAACAGCAT---TAATAATTATTTCTTTTACTCTC 8842405
Query 13623 AT-TAGAAGGAGGATATTTTAGA---TGTTTAAAAATTAAACACGCAAAATCACAATGAA 13678
| || ||| | | ||| ||||| || || || | ||| ||||| || |
Sbjct 8842406 TGCTCCAA--AGGTTTGTGTAGCAAGTGTTTGAACGCTATGCAGGTAAAGTCACAGTGTA 8842463
Query 13679 GGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtt 13738
| ||||||||| ||||| | ||| || ||| |||| | || ||||| ||||||||||
Sbjct 8842464 AACTCTCATCTCTGCTAATGAATTCATTGGAACATGTGAGGCCAGGCATTAATCCTCGTT 8842523
Query 13739 tttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAA 13798
| || | || ||||| | || || || || |||||||| ||||| || | || ||||
Sbjct 8842524 TCTTGAGTCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTATTGGGGCAA 8842583
Query 13799 ACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATT 13858
| |||| | | ||| | | |||| ||| | ||||| | ||||| |
Sbjct 8842584 AGGCTACATCACACTTACCATAGGTAGCTTCTTTTTCCCCGATCCAATGCAAGGCCCAAT 8842643
Query 13859 CAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTT 13918
| | || || || | | || ||||||| | || |||||||| | | ||| | || |
Sbjct 8842644 CTGCCTTCTTCTTTACACAAGGCATTGTT-CAATGGCATTGAAGAGAAACTCCCTTTCCT 8842702
Query 13919 TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTA 13978
| | | | |||||| || ||| |||| | | ||||||||||| ||||||||||| |
Sbjct 8842703 TGGAATCTTTAATGTAAGTGTCAGTAAGGAGATTGTACATTTCAGAATGTATGTTTTCCA 8842762
Query 13979 TAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATC 14038
| || || || || ||||| | ||| | ||||||| || || | | |||||
Sbjct 8842763 TTGCAATTTGGAAGCCATAGAGACAGCAGGCTTCTGTAATCTGAACTTGTTGGCTAAATC 8842822
Query 14039 TTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCC--AATATGTT 14096
| |||||||||||| | || ||||| || |||||||| || ||| || ||||
Sbjct 8842823 GCACCAGCAAGTTTTCATTCATTATGCCATCGCTTGCTGCAAAGAAAGCCAGAACATGTG 8842882
Query 14097 TTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAA--TCCTTAGAA 14154
| |||| ||| |||| | || || || ||| | ||| || ||||| |||
Sbjct 8842883 AT--GTAAAATATCTTTCTTTAGGCTTCAGGGCTTCCCAGT--GCTGAATGTCCTTGGAA 8842938
Query 14155 AGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACAT 14204
||||| | || ||| | |||||||| || ||||||| ||||||||
Sbjct 8842939 AGATCCAGCTCCTCAGCAGTCCAAAAGGAAGGCTCAGCTTTCTTATACAT 8842988
>seq23
Length=24341844
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741
|||||||||| ||||||||||| || |||||||| | || ||||| ||||||||||| |
Sbjct 8996043 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGCCCAGGCATTAATCCTCGTTTCT 8996102
Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801
| | ||| ||||| | || || || || |||||||| ||||| || || || ||||| |
Sbjct 8996103 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACGGCTGCAAAGG 8996162
Query 13802 CTATTAGTCGTTCTCC 13817
||| | || |||||
Sbjct 8996163 CTACAACACGCTCTCC 8996178
Score = 84.2 bits (92), Expect = 2e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988
|||||| || |||||||| | |||||||||||||| ||||||||||| || || || ||
Sbjct 8998521 AATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 8998580
Query 13989 AAAACCATAAAAACATCTAGCTTCTG 14014
|| ||||| ||||| | |||||||
Sbjct 8998581 GAAGCCATAGAAACAGCGGGCTTCTG 8998606
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478550973537720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |