Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq87 199 4e-46 seq23 111 2e-19 >seq87 Length=11743621 Score = 199 bits (220), Expect = 4e-46 Identities = 549/830 (66%), Gaps = 20/830 (2%) Strand=Plus/Plus Query 13384 ACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAAT 13443 ||||| || || || ||||||||| | |||||| |||| ||||| |||||||| || ||| Sbjct 8842170 ACTCTCTTCTCGAAGAAGTTAGTTCTCCCTTCCTGTGAAATATTCTCCATAAAGTCAAAT 8842229 Query 13444 GGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATA 13503 |||||| | | || || || | | |||| ||||| | | || ||| || || | | Sbjct 8842230 GGATTTTCTACTCTGAATACCTTGTTAAAACCCAGTTCCAGCATTAGTCTCTCTGCTACA 8842289 Query 13504 AACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATA 13563 | | |||| || || ||||||| |||||||| | || || || ||| | | Sbjct 8842290 A-CGCAATGTACTGCTTCATTAAAGTGCAATTCATTCTGATAAGCTTCACATGCAAGGCC 8842348 Query 13564 TTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCT-TAATAATGTC 13622 | ||| | | || | |||||| ||||| | | ||||| || | | || | || Sbjct 8842349 TCAGTAAGGAGCTCCTATTCTATCCTAACAGCAT---TAATAATTATTTCTTTTACTCTC 8842405 Query 13623 AT-TAGAAGGAGGATATTTTAGA---TGTTTAAAAATTAAACACGCAAAATCACAATGAA 13678 | || ||| | | ||| ||||| || || || | ||| ||||| || | Sbjct 8842406 TGCTCCAA--AGGTTTGTGTAGCAAGTGTTTGAACGCTATGCAGGTAAAGTCACAGTGTA 8842463 Query 13679 GGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtt 13738 | ||||||||| ||||| | ||| || ||| |||| | || ||||| |||||||||| Sbjct 8842464 AACTCTCATCTCTGCTAATGAATTCATTGGAACATGTGAGGCCAGGCATTAATCCTCGTT 8842523 Query 13739 tttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAA 13798 | || | || ||||| | || || || || |||||||| ||||| || | || |||| Sbjct 8842524 TCTTGAGTCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTATTGGGGCAA 8842583 Query 13799 ACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATT 13858 | |||| | | ||| | | |||| ||| | ||||| | ||||| | Sbjct 8842584 AGGCTACATCACACTTACCATAGGTAGCTTCTTTTTCCCCGATCCAATGCAAGGCCCAAT 8842643 Query 13859 CAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTT 13918 | | || || || | | || ||||||| | || |||||||| | | ||| | || | Sbjct 8842644 CTGCCTTCTTCTTTACACAAGGCATTGTT-CAATGGCATTGAAGAGAAACTCCCTTTCCT 8842702 Query 13919 TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTA 13978 | | | | |||||| || ||| |||| | | ||||||||||| ||||||||||| | Sbjct 8842703 TGGAATCTTTAATGTAAGTGTCAGTAAGGAGATTGTACATTTCAGAATGTATGTTTTCCA 8842762 Query 13979 TAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATC 14038 | || || || || ||||| | ||| | ||||||| || || | | ||||| Sbjct 8842763 TTGCAATTTGGAAGCCATAGAGACAGCAGGCTTCTGTAATCTGAACTTGTTGGCTAAATC 8842822 Query 14039 TTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCC--AATATGTT 14096 | |||||||||||| | || ||||| || |||||||| || ||| || |||| Sbjct 8842823 GCACCAGCAAGTTTTCATTCATTATGCCATCGCTTGCTGCAAAGAAAGCCAGAACATGTG 8842882 Query 14097 TTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAA--TCCTTAGAA 14154 | |||| ||| |||| | || || || ||| | ||| || ||||| ||| Sbjct 8842883 AT--GTAAAATATCTTTCTTTAGGCTTCAGGGCTTCCCAGT--GCTGAATGTCCTTGGAA 8842938 Query 14155 AGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACAT 14204 ||||| | || ||| | |||||||| || ||||||| |||||||| Sbjct 8842939 AGATCCAGCTCCTCAGCAGTCCAAAAGGAAGGCTCAGCTTTCTTATACAT 8842988 >seq23 Length=24341844 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||||||||| || |||||||| | || ||||| ||||||||||| | Sbjct 8996043 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGCCCAGGCATTAATCCTCGTTTCT 8996102 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||| | || || || || |||||||| ||||| || || || ||||| | Sbjct 8996103 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACGGCTGCAAAGG 8996162 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | || ||||| Sbjct 8996163 CTACAACACGCTCTCC 8996178 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 13929 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTG 13988 |||||| || |||||||| | |||||||||||||| ||||||||||| || || || || Sbjct 8998521 AATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 8998580 Query 13989 AAAACCATAAAAACATCTAGCTTCTG 14014 || ||||| ||||| | ||||||| Sbjct 8998581 GAAGCCATAGAAACAGCGGGCTTCTG 8998606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478550973537720