Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq88 100 4e-16 seq102 95.1 2e-14 >seq88 Length=11737398 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 97179 CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAG 97238 || ||| | |||||| | | ||||| |||||| || || |||||||| ||||||||| Sbjct 370202 CTTTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGTACCCCGTACATGCTCTACAAG 370143 Query 97239 GATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTG 97298 ||| || ||||| || |||||||| | || |||| || ||||| || ||| ||| Sbjct 370142 GATTCCTGTAATCGGAAGAGCAACCAGCAGAACCTGGGAACAATCAAATGCAGCAACCTG 370083 Query 97299 TGCACGGAAATTGTAGAGTA 97318 ||||| ||||| |||||||| Sbjct 370082 TGCACAGAAATAGTAGAGTA 370063 >seq102 Length=10627846 Score = 95.1 bits (104), Expect = 2e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 97179 CTGTGGAAGGCCATCG-TGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAA 97237 || ||| | |||||| ||| | |||||| |||||| || |||| |||||| |||||||| Sbjct 1346360 CTTTGGTATGCCATCACTGA-GTCTCAGGCAGAGACAGGTACTCTGTACATGCTCTACAA 1346418 Query 97238 GGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCT 97297 |||| || ||| | || ||||||| | || |||| || ||||| || ||| || Sbjct 1346419 GGATTCCTATAATTGGAAGAGCAACCGGCAGAACCTGGGAACGATCAAATGCAGCAACCT 1346478 Query 97298 GTGCACGGAAATTGTAGAGTA 97318 |||||| ||||| |||||||| Sbjct 1346479 GTGCACAGAAATAGTAGAGTA 1346499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741000628533480