Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq88 100 4e-16
seq102 95.1 2e-14
>seq88
Length=11737398
Score = 100 bits (110), Expect = 4e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 97179 CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAG 97238
|| ||| | |||||| | | ||||| |||||| || || |||||||| |||||||||
Sbjct 370202 CTTTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGTACCCCGTACATGCTCTACAAG 370143
Query 97239 GATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTG 97298
||| || ||||| || |||||||| | || |||| || ||||| || ||| |||
Sbjct 370142 GATTCCTGTAATCGGAAGAGCAACCAGCAGAACCTGGGAACAATCAAATGCAGCAACCTG 370083
Query 97299 TGCACGGAAATTGTAGAGTA 97318
||||| ||||| ||||||||
Sbjct 370082 TGCACAGAAATAGTAGAGTA 370063
>seq102
Length=10627846
Score = 95.1 bits (104), Expect = 2e-14
Identities = 107/141 (76%), Gaps = 2/141 (1%)
Strand=Plus/Plus
Query 97179 CTGTGGAAGGCCATCG-TGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAA 97237
|| ||| | |||||| ||| | |||||| |||||| || |||| |||||| ||||||||
Sbjct 1346360 CTTTGGTATGCCATCACTGA-GTCTCAGGCAGAGACAGGTACTCTGTACATGCTCTACAA 1346418
Query 97238 GGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCT 97297
|||| || ||| | || ||||||| | || |||| || ||||| || ||| ||
Sbjct 1346419 GGATTCCTATAATTGGAAGAGCAACCGGCAGAACCTGGGAACGATCAAATGCAGCAACCT 1346478
Query 97298 GTGCACGGAAATTGTAGAGTA 97318
|||||| ||||| ||||||||
Sbjct 1346479 GTGCACAGAAATAGTAGAGTA 1346499
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741000628533480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |