Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq40 93.3 3e-14 >seq40 Length=19935044 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 33167 TGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGC 33226 |||| |||||||| || || || ||||| ||||| | | || | || |||| ||| Sbjct 1219241 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 1219182 Query 33227 TTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATC--- 33283 || || ||| || | | |||||||| | || ||||||||||| || ||| Sbjct 1219181 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTA 1219122 Query 33284 GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCC 33343 |||| |||| | | || ||||| |||||| || ||||| || || || |||||| Sbjct 1219121 GCCT---TTACGTTCTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCC 1219065 Query 33344 GTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || ||||||||||||||||| Sbjct 1219064 GTTAGGGTCTTTACGAAAATTTGCAT 1219039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318753034500054