Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq40 93.3 3e-14
>seq40
Length=19935044
Score = 93.3 bits (102), Expect = 3e-14
Identities = 145/206 (70%), Gaps = 6/206 (3%)
Strand=Plus/Minus
Query 33167 TGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGC 33226
|||| |||||||| || || || ||||| ||||| | | || | || |||| |||
Sbjct 1219241 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 1219182
Query 33227 TTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATC--- 33283
|| || ||| || | | |||||||| | || ||||||||||| || |||
Sbjct 1219181 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTA 1219122
Query 33284 GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCC 33343
|||| |||| | | || ||||| |||||| || ||||| || || || ||||||
Sbjct 1219121 GCCT---TTACGTTCTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCC 1219065
Query 33344 GTAAGAGTTTTTACGAAAATTTGCAT 33369
|| || || |||||||||||||||||
Sbjct 1219064 GTTAGGGTCTTTACGAAAATTTGCAT 1219039
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318753034500054
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |