Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq87 233 2e-56 seq9 105 6e-18 seq23 82.4 7e-11 >seq87 Length=11743621 Score = 233 bits (258), Expect = 2e-56 Identities = 573/852 (67%), Gaps = 24/852 (3%) Strand=Plus/Plus Query 12875 ACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAAA 12934 ||||| || || || ||||| ||| | ||||| |||||||| |||||||| || || Sbjct 8842170 ACTCTCTTCTCGAAGAAGTTAGTTCTCCCTTCCTGTGAAATATTCTCCATAAAGTCAAAT 8842229 Query 12935 GGATTTTTCGAACAATAGTATTTT-TTACACCCTAATTCTAGTAACAATCTGTCAGCAAC 12993 ||||||| | | | || || ||| | || | ||| || | | ||| || || || Sbjct 8842230 GGATTTT-CTACTCTGAATACCTTGTTAAAACCCAGTTCCAGCATTAGTCTCTCTGCTAC 8842288 Query 12994 AAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATAGC 13053 || | | |||||||| ||||||||| || ||||||| || | || ||| ||| || Sbjct 8842289 AA-CGCAATGTACTGCTTCATTAAAGTGCAATTCATTCTGATAAGCTTCACATGCAAGGC 8842347 Query 13054 TTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTCTTATTACGTT 13113 || || | | | | |||||| ||| || | |||| ||| ||| ||| | | Sbjct 8842348 CTCAGTAAGGAGCTCCTATTCTATCCTAACAGCATTAATAATTATTTCTTTTACTCTCTG 8842407 Query 13114 CTCTAATGGAGGATTTGATAGA---TGCTTAAACATCATACATGCAAAATCACAGTGCAA 13170 ||| || ||| || ||| || || ||| || || | ||| |||||||| || Sbjct 8842408 CTCCAA---AGGTTTGTGTAGCAAGTGTTTGAACGCTATGCAGGTAAAGTCACAGTGTAA 8842464 Query 13171 TCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTT 13230 | |||||||| || || | || || ||| |||| || || ||||| | |||||||| Sbjct 8842465 ACTCTCATCTCTGCTAATGAATTCATTGGAACATGTGAGGCCAGGCATTAATCCTCGTTT 8842524 Query 13231 TTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAA 13290 || | || ||||| | ||||| ||||| ||||| || |||||||| | || ||||| Sbjct 8842525 CTTGAGTCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTATTGGGGCAAA 8842584 Query 13291 CGCTA--TCAACCTTTCACCATACGTA-CTATTTTTACTCTCTATCCACTTTCTGGCCCA 13347 |||| ||| ||| |||||| ||| || |||| | | | ||||| | |||||| Sbjct 8842585 GGCTACATCACACTT--ACCATAGGTAGCTTCTTTTTCCC-CGATCCAATGCAAGGCCCA 8842641 Query 13348 GTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAtttttttC 13407 | ||| || | || || || ||| | ||| || || || || | | | | |||| Sbjct 8842642 ATCTGCCTTCTTCTTTACACAAGGCAT-TGTTCAATGGCATTGAAGAGAAACTCCCTTTC 8842700 Query 13408 CTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTC 13467 ||| ||| ||| ||||| || | | | | |||||||| ||||| || ||||| Sbjct 8842701 CTTGGAATCTTTAATGTAAGTGTCAGTAAGGAGATTGTACATTTCAGAATGTATGTTTTC 8842760 Query 13468 CATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAA 13527 ||| || |||||||| ||||| | ||| | || |||| | |||||||| | ||| Sbjct 8842761 CATTGCAATTTGGAAGCCATAGAGACAGCAGGCTTCTGTAATCTGAACTTGTTGGCTAAA 8842820 Query 13528 TCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTA--TG 13585 || | |||||||| || | ||| || || || || ||||| ||||| || | || Sbjct 8842821 TCGCACCAGCAAGTTTTCATTCATTATGCCATCGCTTGCTGCAAAGAAAGCCAGAACATG 8842880 Query 13586 TGCT-TAATAAAttttt-tttCGTTTTCTGACAACTTTAACCAATCTGGAAAATCTTTTG 13643 || | ||| | || ||| ||| | ||| | ||| ||| | ||| || || | Sbjct 8842881 TGATGTAAAATATCTTTCTTTAGGCTTCAGGG--CTTC--CCAGTGCTGAATGTCCTTGG 8842936 Query 13644 ATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATA 13703 | | ||| | ||||||| | |||||||| |||| |||| |||||||||||| ||| | Sbjct 8842937 AAAGATCCAGCTCCTCAGCAGTCCAAAAGGAAGGCTCAGCTTTCTTATACATCTGCCAAA 8842996 Query 13704 TATCCTTATAAA 13715 |||| | | ||| Sbjct 8842997 TATCATGACAAA 8843008 >seq9 Length=34412642 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || || ||||| || || || |||||||| |||| || | Sbjct 15801834 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGACCTCTCTTCT 15801775 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || || || || || || ||||| || || ||||| | Sbjct 15801774 TTAGCCAGAATATAGCAGCAAAAGATCCGGAGAAGAAAATCCCTTCTACAGCAGCAAAGG 15801715 Query 13293 CTATCAACCTTTCACC 13308 ||| || |||||| || Sbjct 15801714 CTACCACCCTTTCCCC 15801699 Score = 89.7 bits (98), Expect = 4e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || ||||| ||||||||| || |||||||| |||||||| ||||| |||||| Sbjct 15817932 TGATACTCTGAAACTCGTTTTTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 15817873 Query 12923 ATAAAATCGAAAGGATTTT 12941 |||||||| || ||||||| Sbjct 15817872 ATAAAATCAAAGGGATTTT 15817854 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 |||||||| || |||||||| ||||| |||||||| ||| |||| |||||||| || | Sbjct 15811157 AATCTGTCTGCTACAAACTCAATGTATTGTTTCATCAAAACACAATTCATTCCAATGAGG 15811098 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAA 13065 || |||| ||||||||||||||| Sbjct 15811097 CCAACTGGCAAAGCTTCTGTTAAAAA 15811072 >seq23 Length=24341844 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 13404 tttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATAT 13463 ||||||| ||| ||| ||||| || || | | ||||||||||| ||||| || | Sbjct 8998505 TTTCCTTGGAATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGT 8998564 Query 13464 TTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||||||| || |||||||| ||||| ||||| | || |||| | ||||||||| Sbjct 8998565 TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 8998619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430949187822846