Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq87 233 2e-56
seq9 105 6e-18
seq23 82.4 7e-11
>seq87
Length=11743621
Score = 233 bits (258), Expect = 2e-56
Identities = 573/852 (67%), Gaps = 24/852 (3%)
Strand=Plus/Plus
Query 12875 ACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAAA 12934
||||| || || || ||||| ||| | ||||| |||||||| |||||||| || ||
Sbjct 8842170 ACTCTCTTCTCGAAGAAGTTAGTTCTCCCTTCCTGTGAAATATTCTCCATAAAGTCAAAT 8842229
Query 12935 GGATTTTTCGAACAATAGTATTTT-TTACACCCTAATTCTAGTAACAATCTGTCAGCAAC 12993
||||||| | | | || || ||| | || | ||| || | | ||| || || ||
Sbjct 8842230 GGATTTT-CTACTCTGAATACCTTGTTAAAACCCAGTTCCAGCATTAGTCTCTCTGCTAC 8842288
Query 12994 AAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATAGC 13053
|| | | |||||||| ||||||||| || ||||||| || | || ||| ||| ||
Sbjct 8842289 AA-CGCAATGTACTGCTTCATTAAAGTGCAATTCATTCTGATAAGCTTCACATGCAAGGC 8842347
Query 13054 TTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTCTTATTACGTT 13113
|| || | | | | |||||| ||| || | |||| ||| ||| ||| | |
Sbjct 8842348 CTCAGTAAGGAGCTCCTATTCTATCCTAACAGCATTAATAATTATTTCTTTTACTCTCTG 8842407
Query 13114 CTCTAATGGAGGATTTGATAGA---TGCTTAAACATCATACATGCAAAATCACAGTGCAA 13170
||| || ||| || ||| || || ||| || || | ||| |||||||| ||
Sbjct 8842408 CTCCAA---AGGTTTGTGTAGCAAGTGTTTGAACGCTATGCAGGTAAAGTCACAGTGTAA 8842464
Query 13171 TCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTT 13230
| |||||||| || || | || || ||| |||| || || ||||| | ||||||||
Sbjct 8842465 ACTCTCATCTCTGCTAATGAATTCATTGGAACATGTGAGGCCAGGCATTAATCCTCGTTT 8842524
Query 13231 TTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAA 13290
|| | || ||||| | ||||| ||||| ||||| || |||||||| | || |||||
Sbjct 8842525 CTTGAGTCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTATTGGGGCAAA 8842584
Query 13291 CGCTA--TCAACCTTTCACCATACGTA-CTATTTTTACTCTCTATCCACTTTCTGGCCCA 13347
|||| ||| ||| |||||| ||| || |||| | | | ||||| | ||||||
Sbjct 8842585 GGCTACATCACACTT--ACCATAGGTAGCTTCTTTTTCCC-CGATCCAATGCAAGGCCCA 8842641
Query 13348 GTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAtttttttC 13407
| ||| || | || || || ||| | ||| || || || || | | | | ||||
Sbjct 8842642 ATCTGCCTTCTTCTTTACACAAGGCAT-TGTTCAATGGCATTGAAGAGAAACTCCCTTTC 8842700
Query 13408 CTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTC 13467
||| ||| ||| ||||| || | | | | |||||||| ||||| || |||||
Sbjct 8842701 CTTGGAATCTTTAATGTAAGTGTCAGTAAGGAGATTGTACATTTCAGAATGTATGTTTTC 8842760
Query 13468 CATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAA 13527
||| || |||||||| ||||| | ||| | || |||| | |||||||| | |||
Sbjct 8842761 CATTGCAATTTGGAAGCCATAGAGACAGCAGGCTTCTGTAATCTGAACTTGTTGGCTAAA 8842820
Query 13528 TCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTA--TG 13585
|| | |||||||| || | ||| || || || || ||||| ||||| || | ||
Sbjct 8842821 TCGCACCAGCAAGTTTTCATTCATTATGCCATCGCTTGCTGCAAAGAAAGCCAGAACATG 8842880
Query 13586 TGCT-TAATAAAttttt-tttCGTTTTCTGACAACTTTAACCAATCTGGAAAATCTTTTG 13643
|| | ||| | || ||| ||| | ||| | ||| ||| | ||| || || |
Sbjct 8842881 TGATGTAAAATATCTTTCTTTAGGCTTCAGGG--CTTC--CCAGTGCTGAATGTCCTTGG 8842936
Query 13644 ATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATA 13703
| | ||| | ||||||| | |||||||| |||| |||| |||||||||||| ||| |
Sbjct 8842937 AAAGATCCAGCTCCTCAGCAGTCCAAAAGGAAGGCTCAGCTTTCTTATACATCTGCCAAA 8842996
Query 13704 TATCCTTATAAA 13715
|||| | | |||
Sbjct 8842997 TATCATGACAAA 8843008
>seq9
Length=34412642
Score = 105 bits (116), Expect = 6e-18
Identities = 105/136 (77%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232
|||||||||| || || || || || ||||| || || || |||||||| |||| || |
Sbjct 15801834 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGACCTCTCTTCT 15801775
Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292
| | ||| |||||||||||||| || || || || || || ||||| || || ||||| |
Sbjct 15801774 TTAGCCAGAATATAGCAGCAAAAGATCCGGAGAAGAAAATCCCTTCTACAGCAGCAAAGG 15801715
Query 13293 CTATCAACCTTTCACC 13308
||| || |||||| ||
Sbjct 15801714 CTACCACCCTTTCCCC 15801699
Score = 89.7 bits (98), Expect = 4e-13
Identities = 67/79 (85%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922
||||| || ||||| ||||||||| || |||||||| |||||||| ||||| ||||||
Sbjct 15817932 TGATACTCTGAAACTCGTTTTTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 15817873
Query 12923 ATAAAATCGAAAGGATTTT 12941
|||||||| || |||||||
Sbjct 15817872 ATAAAATCAAAGGGATTTT 15817854
Score = 84.2 bits (92), Expect = 2e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039
|||||||| || |||||||| ||||| |||||||| ||| |||| |||||||| || |
Sbjct 15811157 AATCTGTCTGCTACAAACTCAATGTATTGTTTCATCAAAACACAATTCATTCCAATGAGG 15811098
Query 13040 TTTACAGGCATAGCTTCTGTTAAAAA 13065
|| |||| |||||||||||||||
Sbjct 15811097 CCAACTGGCAAAGCTTCTGTTAAAAA 15811072
>seq23
Length=24341844
Score = 82.4 bits (90), Expect = 7e-11
Identities = 87/115 (76%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 13404 tttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATAT 13463
||||||| ||| ||| ||||| || || | | ||||||||||| ||||| || |
Sbjct 8998505 TTTCCTTGGAATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGT 8998564
Query 13464 TTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518
||||||| || |||||||| ||||| ||||| | || |||| | |||||||||
Sbjct 8998565 TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 8998619
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430949187822846
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |