Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq175 172 1e-37 seq40 156 1e-32 seq209 131 4e-25 seq113 120 7e-22 seq9 114 3e-20 seq154 113 1e-19 seq48 111 4e-19 seq47 111 4e-19 seq23 89.7 1e-12 >seq175 Length=5584636 Score = 172 bits (190), Expect = 1e-37 Identities = 166/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | ||||| || || ||||| || |||||| | | ||| || ||||| Sbjct 1836507 ACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAAACAAAGTAGGTCCATCTTCC 1836448 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 |||| ||| |||||||| || || |||||||||||||||| ||||||||||||||||| Sbjct 1836447 AGTTTTTTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAGAAATTCCTTCTTTATCCTGG 1836388 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| |||||||||||||||| ||||| ||||| |||| || || || ||||| Sbjct 1836387 ATCTTGGCTTTTACATTTTCTATTGTATCTGAGGGTTCATCCTCAAGAGTGATGGTCTTC 1836328 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || | || ||||||||||| || ||||| ||| Sbjct 1836327 CCCATTAGGGTTTTTACAAAAATGTGCATCTTG 1836295 >seq40 Length=19935044 Score = 156 bits (172), Expect = 1e-32 Identities = 155/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || |||||||| ||||| | || ||||| || || || || Sbjct 1219235 GTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 1219176 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| || |||||||| || |||||||||||||| ||||| || ||| Sbjct 1219175 GCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTAGCCTTT 1219116 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || || ||||| ||||| || || || ||||| || || || || Sbjct 1219115 ACGTTCTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCCGTTAGGGTC 1219056 Query 104543 TTTACAAATATCTGCATTTTG 104563 ||||| || || |||||| || Sbjct 1219055 TTTACGAAAATTTGCATTCTG 1219035 Score = 131 bits (144), Expect = 4e-25 Identities = 131/169 (78%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 104334 CCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATA 104393 |||||| || | ||| || ||||| | || || |||||||| ||||| |||||||| | Sbjct 1219694 CCCCTC--AGACGAAGGACAAGATGCAGAGTTGACTCTTTCTGGATATTGTAGTCAGAAA 1219637 Query 104394 GAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTA 104453 |||| | || ||||| || || || || ||||| || |||||||| || |||||||| | Sbjct 1219636 GAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGA 1219577 Query 104454 TTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCT 104502 | |||||||||||||| ||||| || || || || || | |||||| || Sbjct 1219576 TGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCACT 1219528 >seq209 Length=4208363 Score = 131 bits (144), Expect = 4e-25 Identities = 145/191 (76%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 104373 TCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTA 104432 |||| || || |||||||| || | | ||| ||||| || || || || ||||| || | Sbjct 4009476 TCTGGATGTTGTAGTCAGAAAGTG--CGACCATCTTC-AGGTGCTTGCCTGCAAAGATGA 4009532 Query 104433 GCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTA 104492 ||||||| || |||||||| || |||||||||||||| | ||| || |||| || || | Sbjct 4009533 GCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGAGCTTAGCCTTTATGTTCTCAA 4009592 Query 104493 CGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATA 104552 ||| || || ||||| ||||| || || || ||||| ||||| || | |||| || | Sbjct 4009593 TGGTGTCCCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGATCTTTATGAAGA 4009652 Query 104553 TCTGCATTTTG 104563 | ||||||||| Sbjct 4009653 TTTGCATTTTG 4009663 >seq113 Length=9683949 Score = 120 bits (132), Expect = 7e-22 Identities = 158/214 (74%), Gaps = 5/214 (2%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || || |||| || |||||||| | || | || ||||| Sbjct 8523900 ACAAGATGAAGAGTTGACTCCTTA-GAATGTTGTAGTCAGACAAGGTACGTCCATCTTCC 8523958 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||||| ||||||| || || ||||| || |||||| |||||||| |||||||| Sbjct 8523959 AGTTGTTAGTCAGCAAAGATCAGTCTCTGCTGG--AGGAGGAATTCCTTCCTTATCCTGG 8524016 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAG-GTTCTACCTCTAGTGTAATAGTCTT 104529 ||||| || ||||||||| ||| ||||| | || |||| |||| || || || ||||| Sbjct 8524017 ATCTTGGCCTTTACATTTCCTATTGTATC-CAAGTGTTCAACCTTGAGAGTGATGGTCTT 8524075 Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 | | || || |||| || |||||||||||| Sbjct 8524076 CTCCATTAGGGTATTTATGAAAATCTGCATTTTG 8524109 >seq9 Length=34412642 Score = 114 bits (126), Expect = 3e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || |||||| | || || ||||| ||||||||||| || ||||| || || |||||||| Sbjct 15801699 GGGGAAAGGGTGGTAGCCTTTGCTGCTGTAGAAGGGATTTTCTTCTCCGGATCTTTTGCT 15801758 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||| || ||| | ||||| ||||| |||||||| ||| | ||||| || || ||| | Sbjct 15801759 GCTATATTCTGGCTAAAGAAGAGAGGTCTTATGCCTGGACTTACTTTTTCCAATGAACTC 15801818 Query 269246 ATAAGCAGGGACGAAG 269261 || ||||| || |||| Sbjct 15801819 ATCAGCAGAGATGAAG 15801834 >seq154 Length=6958011 Score = 113 bits (124), Expect = 1e-19 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553 |||||||| | | | |||||||| | ||||| | || || | || || |||||| | Sbjct 5294378 TGGTGGTACTTTGTATCTAAAGGCGTTGAATATTTGGACACAGTTTTTTTTATCCTAAGG 5294437 Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613 |||||| ||| ||| | ||| || |||||||||||||||| ||| |||||||| ||| Sbjct 5294438 AAGAAAAATAACCAAGTCTCTTTCCTTCATGTATATCATCATTGTACAATGTTTACATTG 5294497 Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 | ||||| || ||||| ||| | ||||| ||||||| Sbjct 5294498 TGGTGGATTGGAATTAAGTGGGTGGCAGGGGGACAAG 5294534 >seq48 Length=17931790 Score = 111 bits (122), Expect = 4e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464 ||||| | ||| || |||||||| || || || || ||||||||| | |||||||| ||| Sbjct 9683742 TCTTCCATTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAAGAATTCCTTCCTTA 9683801 Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA 104524 || || ||||| |||| ||| ||||||| ||||| ||||| ||||| || || | | Sbjct 9683802 TCTTGGATCTTGGCTTGTACGTTTTCTATTGTATCCGAGGGTTCAACCTCCAGAGTTACA 9683861 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 |||| | || | | ||||| || |||||||||||| Sbjct 9683862 ATCTTCCACGTCTGAGGTTTTATGAAAATCTGCATTTTG 9683900 >seq47 Length=17992032 Score = 111 bits (122), Expect = 4e-19 Identities = 139/188 (74%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTA-CCGTCTTCTAGTTGTTTTCCAGCAAA 104427 || || ||||| || |||||||| | |||| | || |||| ||||| | |||||||| Sbjct 7327073 TCCTTTTGAATGTTGTAGTCAGACA-AGTTATGTCCATCTTTCAGTTGCCTGCCAGCAAA 7327015 Query 104428 AATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATT 104487 || || || || ||||||||||| |||| ||| || ||||| ||||| |||||||| || Sbjct 7327014 GATCAGTCTGTGCTGATCAGGAGGAATTCTTTCCTTTTCCTGGATCTTGGCTTTTACGTT 7326955 Query 104488 TTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTAC 104547 ||||| ||||| || || ||| | || || ||||| || || || ||||||| Sbjct 7326954 TTCTATTGTATCTAAGGGCTCAGCCTTGACAGTGATGGTCTTCCCTGTTAGAGTTTTTAT 7326895 Query 104548 AAATATCT 104555 || |||| Sbjct 7326894 GAAAATCT 7326887 >seq23 Length=24341844 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 269492 GTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTC 269551 || |||||||||||| |||||||||||||| ||| ||||||| ||| |||| ||||| Sbjct 8994400 GTAGAAAATCCGTTTGACTTTATGGAGAATATTTCACTAGAAGGGAAGACTAACTTCTTT 8994341 Query 269552 GAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATT 269611 |||||| | || | | ||||||| ||||| || ||||| | | ||| ||| | Sbjct 8994340 GAGAAGAGAGTGGGCGAGTATCAGAGGATGGGAGTGATGTCCAGCCCAACAGAGAATTCT 8994281 Query 269612 TTCACTACAGATGCAGAATTCTAA 269635 || || ||||| || |||||| Sbjct 8994280 TTTACCTTGGATGCTGACTTCTAA 8994257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151305121257684