Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq175 172 1e-37
seq40 156 1e-32
seq209 131 4e-25
seq113 120 7e-22
seq9 114 3e-20
seq154 113 1e-19
seq48 111 4e-19
seq47 111 4e-19
seq23 89.7 1e-12
>seq175
Length=5584636
Score = 172 bits (190), Expect = 1e-37
Identities = 166/213 (78%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|| ||||| | ||||| || || ||||| || |||||| | | ||| || |||||
Sbjct 1836507 ACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAAACAAAGTAGGTCCATCTTCC 1836448
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
|||| ||| |||||||| || || |||||||||||||||| |||||||||||||||||
Sbjct 1836447 AGTTTTTTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAGAAATTCCTTCTTTATCCTGG 1836388
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530
||||| |||||||||||||||| ||||| ||||| |||| || || || |||||
Sbjct 1836387 ATCTTGGCTTTTACATTTTCTATTGTATCTGAGGGTTCATCCTCAAGAGTGATGGTCTTC 1836328
Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
|| | || ||||||||||| || ||||| |||
Sbjct 1836327 CCCATTAGGGTTTTTACAAAAATGTGCATCTTG 1836295
>seq40
Length=19935044
Score = 156 bits (172), Expect = 1e-32
Identities = 155/201 (77%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || |||||||| ||||| | || ||||| || || || ||
Sbjct 1219235 GTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 1219176
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || |||||||| || |||||||| || |||||||||||||| ||||| || |||
Sbjct 1219175 GCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTAGCCTTT 1219116
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | ||| || || ||||| ||||| || || || ||||| || || || ||
Sbjct 1219115 ACGTTCTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCCGTTAGGGTC 1219056
Query 104543 TTTACAAATATCTGCATTTTG 104563
||||| || || |||||| ||
Sbjct 1219055 TTTACGAAAATTTGCATTCTG 1219035
Score = 131 bits (144), Expect = 4e-25
Identities = 131/169 (78%), Gaps = 2/169 (1%)
Strand=Plus/Minus
Query 104334 CCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATA 104393
|||||| || | ||| || ||||| | || || |||||||| ||||| |||||||| |
Sbjct 1219694 CCCCTC--AGACGAAGGACAAGATGCAGAGTTGACTCTTTCTGGATATTGTAGTCAGAAA 1219637
Query 104394 GAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTA 104453
|||| | || ||||| || || || || ||||| || |||||||| || |||||||| |
Sbjct 1219636 GAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGA 1219577
Query 104454 TTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCT 104502
| |||||||||||||| ||||| || || || || || | |||||| ||
Sbjct 1219576 TGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCACT 1219528
>seq209
Length=4208363
Score = 131 bits (144), Expect = 4e-25
Identities = 145/191 (76%), Gaps = 3/191 (2%)
Strand=Plus/Plus
Query 104373 TCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTA 104432
|||| || || |||||||| || | | ||| ||||| || || || || ||||| || |
Sbjct 4009476 TCTGGATGTTGTAGTCAGAAAGTG--CGACCATCTTC-AGGTGCTTGCCTGCAAAGATGA 4009532
Query 104433 GCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTA 104492
||||||| || |||||||| || |||||||||||||| | ||| || |||| || || |
Sbjct 4009533 GCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGAGCTTAGCCTTTATGTTCTCAA 4009592
Query 104493 CGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATA 104552
||| || || ||||| ||||| || || || ||||| ||||| || | |||| || |
Sbjct 4009593 TGGTGTCCCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGATCTTTATGAAGA 4009652
Query 104553 TCTGCATTTTG 104563
| |||||||||
Sbjct 4009653 TTTGCATTTTG 4009663
>seq113
Length=9683949
Score = 120 bits (132), Expect = 7e-22
Identities = 158/214 (74%), Gaps = 5/214 (2%)
Strand=Plus/Plus
Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410
|| ||||| | || || || || |||| || |||||||| | || | || |||||
Sbjct 8523900 ACAAGATGAAGAGTTGACTCCTTA-GAATGTTGTAGTCAGACAAGGTACGTCCATCTTCC 8523958
Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470
||||||| ||||||| || || ||||| || |||||| |||||||| ||||||||
Sbjct 8523959 AGTTGTTAGTCAGCAAAGATCAGTCTCTGCTGG--AGGAGGAATTCCTTCCTTATCCTGG 8524016
Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAG-GTTCTACCTCTAGTGTAATAGTCTT 104529
||||| || ||||||||| ||| ||||| | || |||| |||| || || || |||||
Sbjct 8524017 ATCTTGGCCTTTACATTTCCTATTGTATC-CAAGTGTTCAACCTTGAGAGTGATGGTCTT 8524075
Query 104530 ACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
| | || || |||| || ||||||||||||
Sbjct 8524076 CTCCATTAGGGTATTTATGAAAATCTGCATTTTG 8524109
>seq9
Length=34412642
Score = 114 bits (126), Expect = 3e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185
|| |||||| | || || ||||| ||||||||||| || ||||| || || ||||||||
Sbjct 15801699 GGGGAAAGGGTGGTAGCCTTTGCTGCTGTAGAAGGGATTTTCTTCTCCGGATCTTTTGCT 15801758
Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245
||||| || ||| | ||||| ||||| |||||||| ||| | ||||| || || ||| |
Sbjct 15801759 GCTATATTCTGGCTAAAGAAGAGAGGTCTTATGCCTGGACTTACTTTTTCCAATGAACTC 15801818
Query 269246 ATAAGCAGGGACGAAG 269261
|| ||||| || ||||
Sbjct 15801819 ATCAGCAGAGATGAAG 15801834
>seq154
Length=6958011
Score = 113 bits (124), Expect = 1e-19
Identities = 119/157 (76%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 78494 TGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATCCTACGA 78553
|||||||| | | | |||||||| | ||||| | || || | || || |||||| |
Sbjct 5294378 TGGTGGTACTTTGTATCTAAAGGCGTTGAATATTTGGACACAGTTTTTTTTATCCTAAGG 5294437
Query 78554 AAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTTACTTTG 78613
|||||| ||| ||| | ||| || |||||||||||||||| ||| |||||||| |||
Sbjct 5294438 AAGAAAAATAACCAAGTCTCTTTCCTTCATGTATATCATCATTGTACAATGTTTACATTG 5294497
Query 78614 GGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650
| ||||| || ||||| ||| | ||||| |||||||
Sbjct 5294498 TGGTGGATTGGAATTAAGTGGGTGGCAGGGGGACAAG 5294534
>seq48
Length=17931790
Score = 111 bits (122), Expect = 4e-19
Identities = 120/159 (75%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464
||||| | ||| || |||||||| || || || || ||||||||| | |||||||| |||
Sbjct 9683742 TCTTCCATTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAAGAATTCCTTCCTTA 9683801
Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA 104524
|| || ||||| |||| ||| ||||||| ||||| ||||| ||||| || || | |
Sbjct 9683802 TCTTGGATCTTGGCTTGTACGTTTTCTATTGTATCCGAGGGTTCAACCTCCAGAGTTACA 9683861
Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
|||| | || | | ||||| || ||||||||||||
Sbjct 9683862 ATCTTCCACGTCTGAGGTTTTATGAAAATCTGCATTTTG 9683900
>seq47
Length=17992032
Score = 111 bits (122), Expect = 4e-19
Identities = 139/188 (74%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTA-CCGTCTTCTAGTTGTTTTCCAGCAAA 104427
|| || ||||| || |||||||| | |||| | || |||| ||||| | ||||||||
Sbjct 7327073 TCCTTTTGAATGTTGTAGTCAGACA-AGTTATGTCCATCTTTCAGTTGCCTGCCAGCAAA 7327015
Query 104428 AATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATT 104487
|| || || || ||||||||||| |||| ||| || ||||| ||||| |||||||| ||
Sbjct 7327014 GATCAGTCTGTGCTGATCAGGAGGAATTCTTTCCTTTTCCTGGATCTTGGCTTTTACGTT 7326955
Query 104488 TTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTAC 104547
||||| ||||| || || ||| | || || ||||| || || || |||||||
Sbjct 7326954 TTCTATTGTATCTAAGGGCTCAGCCTTGACAGTGATGGTCTTCCCTGTTAGAGTTTTTAT 7326895
Query 104548 AAATATCT 104555
|| ||||
Sbjct 7326894 GAAAATCT 7326887
>seq23
Length=24341844
Score = 89.7 bits (98), Expect = 1e-12
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 269492 GTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTC 269551
|| |||||||||||| |||||||||||||| ||| ||||||| ||| |||| |||||
Sbjct 8994400 GTAGAAAATCCGTTTGACTTTATGGAGAATATTTCACTAGAAGGGAAGACTAACTTCTTT 8994341
Query 269552 GAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATGTCTACTAAAGAAGAAAATATT 269611
|||||| | || | | ||||||| ||||| || ||||| | | ||| ||| |
Sbjct 8994340 GAGAAGAGAGTGGGCGAGTATCAGAGGATGGGAGTGATGTCCAGCCCAACAGAGAATTCT 8994281
Query 269612 TTCACTACAGATGCAGAATTCTAA 269635
|| || ||||| || ||||||
Sbjct 8994280 TTTACCTTGGATGCTGACTTCTAA 8994257
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151305121257684
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |