Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq256 98.7 7e-16 >seq256 Length=2651488 Score = 98.7 bits (108), Expect = 7e-16 Identities = 118/159 (74%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 25494 CCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACC 25553 ||||| | || || |||||||| ||||| || ||||||||||||||| || || ||| Sbjct 779449 CCGGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACC 779390 Query 25554 CCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCAC 25613 || | ||||||| | || ||||||||||| ||||| || || ||||| | | ||| Sbjct 779389 CCCAGGCCCATGT-CGCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACCAC 779331 Query 25614 GTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTAT 25652 || ||||| || | || || ||| ||||| || || || Sbjct 779330 ATAGAACTGGCAAAGGGCGTGGCAGGGAGGCAGCGCCAT 779292 Score = 84.2 bits (92), Expect = 1e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 25772 TCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGT 25831 |||| || | || ||||| || |||| ||||||||| || || || || || |||| | Sbjct 775826 TCATATCTTTATATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAAT 775767 Query 25832 CTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891 |||| || || | | || ||| | ||||||||||||| || |||||||| | Sbjct 775766 CTCCTTCCTCTCGGGTGGGGAATCCCAGGCTGTCCAAAAAGTCTCGAGACCCATTGGCAT 775707 Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 |||||||||| || ||||| || || ||||| | || ||||| || Sbjct 775706 CCCAGATCTTCACTCCCTTGGAAGACAGTTCTTTAGCATTGGTGGATCC 775658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340111388465079