Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_005832.1
Length=106332
Score E
Sequences producing significant alignments: (Bits) Value
seq256 98.7 7e-16
>seq256
Length=2651488
Score = 98.7 bits (108), Expect = 7e-16
Identities = 118/159 (74%), Gaps = 1/159 (1%)
Strand=Plus/Minus
Query 25494 CCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACC 25553
||||| | || || |||||||| ||||| || ||||||||||||||| || || |||
Sbjct 779449 CCGGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACC 779390
Query 25554 CCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCAC 25613
|| | ||||||| | || ||||||||||| ||||| || || ||||| | | |||
Sbjct 779389 CCCAGGCCCATGT-CGCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACCAC 779331
Query 25614 GTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTAT 25652
|| ||||| || | || || ||| ||||| || || ||
Sbjct 779330 ATAGAACTGGCAAAGGGCGTGGCAGGGAGGCAGCGCCAT 779292
Score = 84.2 bits (92), Expect = 1e-11
Identities = 120/169 (71%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 25772 TCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGT 25831
|||| || | || ||||| || |||| ||||||||| || || || || || |||| |
Sbjct 775826 TCATATCTTTATATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAAT 775767
Query 25832 CTCCATCTTCCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891
|||| || || | | || ||| | ||||||||||||| || |||||||| |
Sbjct 775766 CTCCTTCCTCTCGGGTGGGGAATCCCAGGCTGTCCAAAAAGTCTCGAGACCCATTGGCAT 775707
Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940
|||||||||| || ||||| || || ||||| | || ||||| ||
Sbjct 775706 CCCAGATCTTCACTCCCTTGGAAGACAGTTCTTTAGCATTGGTGGATCC 775658
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 340111388465079
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |