Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq40 86.0 3e-12
seq115 84.2 1e-11
seq345 82.4 4e-11
seq180 82.4 4e-11
seq49 82.4 4e-11
seq45 82.4 4e-11
>seq40
Length=19935044
Score = 86.0 bits (94), Expect = 3e-12
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||||| | ||||||| | |||||||||| ||||||| ||||||||||||| ||
Sbjct 11333699 AAAAAAACCCTTTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCAC 11333640
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| |||||||||||||| ||||
Sbjct 11333639 GCTCTAACCAACTGAGCTAACCGGCC 11333614
Score = 86.0 bits (94), Expect = 3e-12
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||| | |||||||||| ||||||| ||||||||||||| ||||||| |||||
Sbjct 11369994 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 11370053
Query 11515 CTGAGCTAATGGGCCG 11530
||||||||| |||||
Sbjct 11370054 CTGAGCTAACCGGCCG 11370069
>seq115
Length=9545123
Score = 84.2 bits (92), Expect = 1e-11
Identities = 70/85 (82%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 11446 AAAAT-CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
||||| | || |||||| | |||||||||| ||||||| ||||||||||||| |||
Sbjct 9194890 AAAATACGAAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACG 9194831
Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529
|||| |||||||||||||| ||||
Sbjct 9194830 CTCTAACCAACTGAGCTAACCGGCC 9194806
>seq345
Length=805940
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 83329 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 83270
Query 11528 CC 11529
||
Sbjct 83269 CC 83268
>seq180
Length=5441683
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 680990 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 680931
Query 11528 CC 11529
||
Sbjct 680930 CC 680929
>seq49
Length=17755568
Score = 82.4 bits (90), Expect = 4e-11
Identities = 59/69 (86%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||||| | |||||||||| |||| ||| ||||||||||||| | ||||| ||||
Sbjct 7769584 TTGGCCCATACAGGGATCGAACCCTCGATCTTGGCGTTATTAGCACCATGCTCTAACCAG 7769525
Query 11515 CTGAGCTAA 11523
|||||||||
Sbjct 7769524 CTGAGCTAA 7769516
>seq45
Length=18494253
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 9746598 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 9746657
Query 11528 CC 11529
||
Sbjct 9746658 CC 9746659
Lambda K H
0.639 0.410 0.921
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261471049079548
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |