Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq35 116 4e-21 >seq35 Length=20596549 Score = 116 bits (128), Expect = 4e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| ||||||||||| || ||| |||| || |||||| | ||||||||||||| || | Sbjct 8448516 AGGGTTACCTGGGATGCCAAGCCTTGTCCGAGATGATCAAATTTTACCTGGAGGTGGTGA 8448575 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||| ||||||| || || | |||| || ||| |||||||||||||| ||||| || | Sbjct 8448576 TGCCGAAGGCTGAGAACCACGGCCCCAACATCAAGGAGCACGTGAACTCCCTGGGGGAAA 8448635 Query 10260 ATCTAAAGACCCTAAGG 10276 | || | ||||| ||| Sbjct 8448636 AGCTGACAACCCTCAGG 8448652 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || ||||| |||||||| |||||||| ||||||||||| || || ||||| | Sbjct 8450815 AGCTCCAAGAGAAAGGTGTCTACAAGGCCATGAGCGAATTTGACATCTTCATCAACTACA 8450874 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 ||||| | |||||||| ||||| || Sbjct 8450875 TAGAAACCTACATGACAATGAAGAT 8450899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547335936516480