Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_006146.1
Length=171096
Score E
Sequences producing significant alignments: (Bits) Value
seq35 116 4e-21
>seq35
Length=20596549
Score = 116 bits (128), Expect = 4e-21
Identities = 108/137 (79%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199
|||| ||||||||||| || ||| |||| || |||||| | ||||||||||||| || |
Sbjct 8448516 AGGGTTACCTGGGATGCCAAGCCTTGTCCGAGATGATCAAATTTTACCTGGAGGTGGTGA 8448575
Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259
|||| ||||||| || || | |||| || ||| |||||||||||||| ||||| || |
Sbjct 8448576 TGCCGAAGGCTGAGAACCACGGCCCCAACATCAAGGAGCACGTGAACTCCCTGGGGGAAA 8448635
Query 10260 ATCTAAAGACCCTAAGG 10276
| || | ||||| |||
Sbjct 8448636 AGCTGACAACCCTCAGG 8448652
Score = 91.5 bits (100), Expect = 2e-13
Identities = 71/85 (84%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418
|||| || || ||||| |||||||| |||||||| ||||||||||| || || ||||| |
Sbjct 8450815 AGCTCCAAGAGAAAGGTGTCTACAAGGCCATGAGCGAATTTGACATCTTCATCAACTACA 8450874
Query 10419 TAGAAGCATACATGACCATGAAAAT 10443
||||| | |||||||| ||||| ||
Sbjct 8450875 TAGAAACCTACATGACAATGAAGAT 8450899
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547335936516480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |