Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq21 149 9e-31
seq38 107 3e-18
>seq21
Length=24716270
Score = 149 bits (164), Expect = 9e-31
Identities = 216/305 (71%), Gaps = 0/305 (0%)
Strand=Plus/Plus
Query 8672 GGAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATA 8731
||||| | |||||| | | ||||| || || || || || |||| |||||||||||
Sbjct 24230307 GGAACACTGAACGCAGTATAGGGACAGCCCTTCACATTACTGCAGATGAGAGACTGGATT 24230366
Query 8732 GTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAA 8791
| || | |||| ||| ||| || || ||||| || |||||||| || ||||||||
Sbjct 24230367 GAGGCTGTGTTGATGATGTTAAAACCTACTTCTCCACCAAAGGTGCTAGGCTTCCAGTAG 24230426
Query 8792 CCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCG 8851
|| || || || || ||||||| ||||| | ||| || || || || || ||
Sbjct 24230427 TGAGGAGAACATATAGGATTACCCATGAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCT 24230486
Query 8852 AGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTAC 8911
| ||| ||||||| ||||| || | ||||| |||||||| |||| | | | |||
Sbjct 24230487 ACCATGGTCTCACCAAAGATAGCATCTGGACGAGGCTTTTCTACCAGAAGGGCAGGATAC 24230546
Query 8912 AACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCT 8971
| ||||| ||| || ||||| || || || ||| | || ||||| |||||||| |||
Sbjct 24230547 AGCTCCATAGCATCAATGTCACCATAGAGTGCCTCTAACTCTGCAGCCATTTCCTTCTCT 24230606
Query 8972 CCTGT 8976
|||||
Sbjct 24230607 CCTGT 24230611
Score = 147 bits (162), Expect = 3e-30
Identities = 170/229 (74%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693
||||| |||| || || ||| ||| |||||||| || |||| || ||||||||||||
Sbjct 24232201 GTCTGGAACAACTGCTCATCATCCCACTCTGGATGCTCCTGTTTAAGCACATCGCACACT 24232260
Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753
||||| || |||| ||||| || || ||||||||||| |||||||||||||| |||||
Sbjct 24232261 CTGTTATGCTCCCGAAGCCAAATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 24232320
Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813
|||| || || ||||| | |||| | || || || | || || |||||||| |
Sbjct 24232321 ACCTCGTGGCCCACAGCAAACCGCAGGTGCTCAGGGACATGAGGCGGGTAGATCATCTCT 24232380
Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862
|||| ||||||||| | || ||||| | || || || || ||||
Sbjct 24232381 GCCTGAGTATCTTTGACGGTAGGAGGATAAACCTCTCCATCGATTATCT 24232429
Score = 123 bits (136), Expect = 4e-23
Identities = 142/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087
||| |||||||| |||| |||||| ||||| || || |||||| ||| ||| | ||
Sbjct 24233340 TCTCACCCCATGGCCCAATCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 24233399
Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147
|||||| || ||||| || ||| |||| || |||||||| | || ||||||||||||||
Sbjct 24233400 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 24233459
Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207
||| |||| | || | |||||| ||| ||||||| | | || ||| || || |
Sbjct 24233460 AGGAATGAACTTTCTTCTCAGAAGAAATTTCTCCACAATCTCTTTCGAATCAGGAAGTTC 24233519
Query 10208 ttttttACCTG 10218
||| || ||||
Sbjct 24233520 TTTCTTTCCTG 24233530
Score = 93.3 bits (102), Expect = 6e-14
Identities = 111/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348
|||||| || || | || || ||||| || ||||| || ||||| || || | |||
Sbjct 24234145 ACCTTTCACACCCATGGGCGTAGGACAGTCATGAGGTACGGGAGGAAGGGCTCTGGTGTA 24234204
Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408
||||||||| ||||| || |||||||||||| || | |||| | || || | ||
Sbjct 24234205 ATAGGAGAGGTTGGAAAAGGCTTCCCAGCTTTTATAGCCATAGTGAACATTATAAGTTGG 24234264
Query 10409 AGGGCTGTCAATCAAATCGGATCTACCTGAA 10439
|||||||||||||||| ||||| |||||
Sbjct 24234265 TGGGCTGTCAATCAAATGTGATCTTGCTGAA 24234295
Score = 86.0 bits (94), Expect = 9e-12
Identities = 179/265 (68%), Gaps = 4/265 (2%)
Strand=Plus/Plus
Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381
|| || | |||||| ||||| | ||||| ||||| || | || |||| || || |
Sbjct 24231548 CTCACCCTGCCAGCAATTTGCCTGGTGAATGATTCAACAAAGTGAGTAAGTCCATGTTCC 24231607
Query 9382 ATGAGTATGGAATTGTTGTAAACGAA--GTTAATGTAGTCATACTTTGTTTTATCAATCT 9439
| | ||| || |||||||| | || ||| || ||| |||| |||||||| |
Sbjct 24231608 AGTAATATAGAGTTGTTGTAGATAAACTGTTGAT--AGTTGTACTCCTGGTTATCAATTT 24231665
Query 9440 CAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9499
||| | || |||| |||| ||||||||| || | ||||||| || | | ||||
Sbjct 24231666 GAAAGGTGTCAGGCAGAAGAGGATGCCAGTGGTAGAGTGTGTTAAATTCAGCAGCAATAC 24231725
Query 9500 GATTTTGGTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGT 9559
| |||||||||||||| | ||| || || || || | |||| || | ||||
Sbjct 24231726 GGTTTTGGTACTGGAATTCTTTGTTAAAAAGAAGCTCTGGGTCAAACTTCAGTTTGAAGT 24231785
Query 9560 GGTAGCCGCTGAGCTGCTGAACATA 9584
|||||||| | ||||| |||||
Sbjct 24231786 TATAGCCGCTCAAGTGCTGCACATA 24231810
>seq38
Length=20210872
Score = 107 bits (118), Expect = 3e-18
Identities = 194/284 (68%), Gaps = 0/284 (0%)
Strand=Plus/Minus
Query 8691 ACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCC 8750
||||||| |||| |||| ||||| || || | || ||| ||||||| ||
Sbjct 6384833 ACGGACAGGTTTTGGTGTTGAGGCAGACCAGCTTCTTCAGTGTGGCAGTCTTGACAATGT 6384774
Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810
|| || | || ||||| || |||||||| |||||||| | || || |||||| | |
Sbjct 6384773 TGAAACCTATCTCACCGCCAAACGTGCTGGGCTTCCAGTACTCTGGAGAACAGATGGCAT 6384714
Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870
|| | | |||||| ||||||||||| |||||||| | || | || ||||| || ||||
Sbjct 6384713 TCCCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATACTCTCCCCAAAGA 6384654
Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGT 8930
||| || ||| || ||| || | | | || | || ||||||| || ||||| |
Sbjct 6384653 TGGAATTTGGATGGCACTTCTCAAGAAGCAGCCCCGGATAGAACTCCATGGCATCGATAT 6384594
Query 8931 CTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974
| || || || | | || || || || ||||| ||||||
Sbjct 6384593 CACCATATAGCTCTTCCAACTCAGCCGCCATCTCCTTCTCTCCT 6384550
Score = 100 bits (110), Expect = 4e-16
Identities = 106/138 (77%), Gaps = 4/138 (3%)
Strand=Plus/Minus
Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 10086
|| |||||||| |||| | ||||||||| | || || || |||| | ||| | |
Sbjct 6371042 CTCACCCCATGGCCCAAGGCCTTAGTGAAGCCAGGACCCATCTTGCCAGA--AGTTTTGA 6370985
Query 10087 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 10146
| |||||||| || |||||||| |||||||||||||||| | ||||||||| |||||||
Sbjct 6370984 AGAACTGGTGGGTAAAATGTTGTGCAAAAAAGGCAAACATGAGGTTGGTGCCTTGGGGAT 6370925
Query 10147 CGGGAGTGAAGGTCCTCC 10164
| || |||| ||||||
Sbjct 6370924 CAGGTATGAACTTCCTCC 6370907
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708468799971120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |