Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq21 149 9e-31 seq38 107 3e-18 >seq21 Length=24716270 Score = 149 bits (164), Expect = 9e-31 Identities = 216/305 (71%), Gaps = 0/305 (0%) Strand=Plus/Plus Query 8672 GGAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATA 8731 ||||| | |||||| | | ||||| || || || || || |||| ||||||||||| Sbjct 24230307 GGAACACTGAACGCAGTATAGGGACAGCCCTTCACATTACTGCAGATGAGAGACTGGATT 24230366 Query 8732 GTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAA 8791 | || | |||| ||| ||| || || ||||| || |||||||| || |||||||| Sbjct 24230367 GAGGCTGTGTTGATGATGTTAAAACCTACTTCTCCACCAAAGGTGCTAGGCTTCCAGTAG 24230426 Query 8792 CCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCG 8851 || || || || || ||||||| ||||| | ||| || || || || || || Sbjct 24230427 TGAGGAGAACATATAGGATTACCCATGAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCT 24230486 Query 8852 AGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTAC 8911 | ||| ||||||| ||||| || | ||||| |||||||| |||| | | | ||| Sbjct 24230487 ACCATGGTCTCACCAAAGATAGCATCTGGACGAGGCTTTTCTACCAGAAGGGCAGGATAC 24230546 Query 8912 AACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCT 8971 | ||||| ||| || ||||| || || || ||| | || ||||| |||||||| ||| Sbjct 24230547 AGCTCCATAGCATCAATGTCACCATAGAGTGCCTCTAACTCTGCAGCCATTTCCTTCTCT 24230606 Query 8972 CCTGT 8976 ||||| Sbjct 24230607 CCTGT 24230611 Score = 147 bits (162), Expect = 3e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| || || ||| ||| |||||||| || |||| || |||||||||||| Sbjct 24232201 GTCTGGAACAACTGCTCATCATCCCACTCTGGATGCTCCTGTTTAAGCACATCGCACACT 24232260 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||| || |||| ||||| || || ||||||||||| |||||||||||||| ||||| Sbjct 24232261 CTGTTATGCTCCCGAAGCCAAATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 24232320 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || ||||| | |||| | || || || | || || |||||||| | Sbjct 24232321 ACCTCGTGGCCCACAGCAAACCGCAGGTGCTCAGGGACATGAGGCGGGTAGATCATCTCT 24232380 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 |||| ||||||||| | || ||||| | || || || || |||| Sbjct 24232381 GCCTGAGTATCTTTGACGGTAGGAGGATAAACCTCTCCATCGATTATCT 24232429 Score = 123 bits (136), Expect = 4e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 ||| |||||||| |||| |||||| ||||| || || |||||| ||| ||| | || Sbjct 24233340 TCTCACCCCATGGCCCAATCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 24233399 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| || ||||| || ||| |||| || |||||||| | || |||||||||||||| Sbjct 24233400 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 24233459 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207 ||| |||| | || | |||||| ||| ||||||| | | || ||| || || | Sbjct 24233460 AGGAATGAACTTTCTTCTCAGAAGAAATTTCTCCACAATCTCTTTCGAATCAGGAAGTTC 24233519 Query 10208 ttttttACCTG 10218 ||| || |||| Sbjct 24233520 TTTCTTTCCTG 24233530 Score = 93.3 bits (102), Expect = 6e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348 |||||| || || | || || ||||| || ||||| || ||||| || || | ||| Sbjct 24234145 ACCTTTCACACCCATGGGCGTAGGACAGTCATGAGGTACGGGAGGAAGGGCTCTGGTGTA 24234204 Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408 ||||||||| ||||| || |||||||||||| || | |||| | || || | || Sbjct 24234205 ATAGGAGAGGTTGGAAAAGGCTTCCCAGCTTTTATAGCCATAGTGAACATTATAAGTTGG 24234264 Query 10409 AGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 |||||||||||||||| ||||| ||||| Sbjct 24234265 TGGGCTGTCAATCAAATGTGATCTTGCTGAA 24234295 Score = 86.0 bits (94), Expect = 9e-12 Identities = 179/265 (68%), Gaps = 4/265 (2%) Strand=Plus/Plus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 || || | |||||| ||||| | ||||| ||||| || | || |||| || || | Sbjct 24231548 CTCACCCTGCCAGCAATTTGCCTGGTGAATGATTCAACAAAGTGAGTAAGTCCATGTTCC 24231607 Query 9382 ATGAGTATGGAATTGTTGTAAACGAA--GTTAATGTAGTCATACTTTGTTTTATCAATCT 9439 | | ||| || |||||||| | || ||| || ||| |||| |||||||| | Sbjct 24231608 AGTAATATAGAGTTGTTGTAGATAAACTGTTGAT--AGTTGTACTCCTGGTTATCAATTT 24231665 Query 9440 CAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9499 ||| | || |||| |||| ||||||||| || | ||||||| || | | |||| Sbjct 24231666 GAAAGGTGTCAGGCAGAAGAGGATGCCAGTGGTAGAGTGTGTTAAATTCAGCAGCAATAC 24231725 Query 9500 GATTTTGGTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGT 9559 | |||||||||||||| | ||| || || || || | |||| || | |||| Sbjct 24231726 GGTTTTGGTACTGGAATTCTTTGTTAAAAAGAAGCTCTGGGTCAAACTTCAGTTTGAAGT 24231785 Query 9560 GGTAGCCGCTGAGCTGCTGAACATA 9584 |||||||| | ||||| ||||| Sbjct 24231786 TATAGCCGCTCAAGTGCTGCACATA 24231810 >seq38 Length=20210872 Score = 107 bits (118), Expect = 3e-18 Identities = 194/284 (68%), Gaps = 0/284 (0%) Strand=Plus/Minus Query 8691 ACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCC 8750 ||||||| |||| |||| ||||| || || | || ||| ||||||| || Sbjct 6384833 ACGGACAGGTTTTGGTGTTGAGGCAGACCAGCTTCTTCAGTGTGGCAGTCTTGACAATGT 6384774 Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 || || | || ||||| || |||||||| |||||||| | || || |||||| | | Sbjct 6384773 TGAAACCTATCTCACCGCCAAACGTGCTGGGCTTCCAGTACTCTGGAGAACAGATGGCAT 6384714 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 || | | |||||| ||||||||||| |||||||| | || | || ||||| || |||| Sbjct 6384713 TCCCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATACTCTCCCCAAAGA 6384654 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGT 8930 ||| || ||| || ||| || | | | || | || ||||||| || ||||| | Sbjct 6384653 TGGAATTTGGATGGCACTTCTCAAGAAGCAGCCCCGGATAGAACTCCATGGCATCGATAT 6384594 Query 8931 CTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 | || || || | | || || || || ||||| |||||| Sbjct 6384593 CACCATATAGCTCTTCCAACTCAGCCGCCATCTCCTTCTCTCCT 6384550 Score = 100 bits (110), Expect = 4e-16 Identities = 106/138 (77%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 10086 || |||||||| |||| | ||||||||| | || || || |||| | ||| | | Sbjct 6371042 CTCACCCCATGGCCCAAGGCCTTAGTGAAGCCAGGACCCATCTTGCCAGA--AGTTTTGA 6370985 Query 10087 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 10146 | |||||||| || |||||||| |||||||||||||||| | ||||||||| ||||||| Sbjct 6370984 AGAACTGGTGGGTAAAATGTTGTGCAAAAAAGGCAAACATGAGGTTGGTGCCTTGGGGAT 6370925 Query 10147 CGGGAGTGAAGGTCCTCC 10164 | || |||| |||||| Sbjct 6370924 CAGGTATGAACTTCCTCC 6370907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708468799971120