Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq87 176 5e-39 seq23 89.7 5e-13 seq9 89.7 5e-13 >seq87 Length=11743621 Score = 176 bits (194), Expect = 5e-39 Identities = 547/840 (65%), Gaps = 12/840 (1%) Strand=Plus/Plus Query 21200 ACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCCATAAAATCAAAT 21259 ||||| || ||||| || || || | |||||| ||| ||| |||||||| |||||| Sbjct 8842170 ACTCTCTTCTCGAAGAAGTTAGTTCTCCCTTCCTGTGAAATATTCTCCATAAAGTCAAAT 8842229 Query 21260 GGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAATCTATCTGCTACA 21319 |||||||| | | |||| || ||| |||||||||| | || ||| ||||||||| Sbjct 8842230 GGATTTTCTACTCTGAATACCTTGTTAAAACCCAGTTCCAGCATTAGTCTCTCTGCTACA 8842289 Query 21320 AATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTACAGGAAGAGCT 21379 | | || || || |||||| |||||||| | ||| | || ||| | | || Sbjct 8842290 ACG-CAATGTACTGCTTCATTAAAGTGCAATTCATTCTGATAAGCTTCACATGCAAGGCC 8842348 Query 21380 TTTGTCAAAAAAGAT--TTTTCTATAGAGACGGCTTCAACAATTATATTTATTATCCTA- 21436 | || || || | | |||||| || || | || |||||| | | ||| || Sbjct 8842349 TCAGT--AAGGAGCTCCTATTCTATCCTAACAGCATTAATAATTATTTCTTTTACTCTCT 8842406 Query 21437 GATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAATCACAATGCAAA 21496 | | | ||| | | || ||||| ||| | || | ||| ||||| || ||| Sbjct 8842407 GCTCCAA-AGGTTTGTGTAGCAAGTGTTTGAACGCTATGCAGGTAAAGTCACAGTGTAAA 8842465 Query 21497 CCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTT 21556 | ||||| || || || |||||||| ||| |||| | || ||||||||||||| || Sbjct 8842466 CTCTCATCTCTGCTAATGAATTCATTGGAACATGTGAGGCCAGGCATTAATCCTCGTTTC 8842525 Query 21557 TTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAAT 21616 || | || ||||| || ||||| | || |||||||| || || || | | ||||| Sbjct 8842526 TTGAGTCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTATTGGGGCAAAG 8842585 Query 21617 GCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTT 21676 || || | | ||| || |||| |||||| ||| ||||| | ||||| | | Sbjct 8842586 GCTACATCACACTTACCATAGGTAGCTTCTTTTTCCCCGATCCAATGCAAGGCCCAATCT 8842645 Query 21677 GCCTT-TTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATGAtttttttCATC 21735 ||||| |||||| | |||| ||||| ||||| || || || ||| | |||| | Sbjct 8842646 GCCTTCTTCTTT-ACACAAGGCATTGT-TCAATGGCATTGAAGAGAAACTCCCTTTCCTT 8842703 Query 21736 TACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTAT 21795 ||| | ||| | | ||||||||||||||||| ||||| || Sbjct 8842704 GGAATCTTTAATGTAAGTGTCAGTAAGGAGATTGTACATTTCAGAATGTATGTTTTCCAT 8842763 Query 21796 CGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTCGGAATAAAATCG 21855 || || || || || || | ||| | || |||| | ||||| | |||||| Sbjct 8842764 TGCAATTTGGAAGCCATAGAGACAGCAGGCTTCTGTAATCTGAACTTGTTGGCTAAATCG 8842823 Query 21856 TTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTT 21915 |||||||||||| | ||| ||||| || || ||||| || |||| | || | Sbjct 8842824 CACCAGCAAGTTTTCATTCATTATGCCATCGCTTGCTGCAAAGAAAGCCAGAACATGTGA 8842883 Query 21916 TATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAAT-CTAATAAATCTTTTGATAAAT 21974 | ||||||||| ||| ||| | | || ||| | || | | || || || | || Sbjct 8842884 TGTAAAATATCTTTCTTTAGGCTTCAGGGCTTCCCAGTGCTGA-ATGTCCTTGGAAAGAT 8842942 Query 21975 CTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCAT 22034 | | || |||| ||||||||| || ||| || |||||||| ||| ||||||| Sbjct 8842943 CCAGCTCCTCAGCAGTCCAAAAGGAAGGCTCAGCTTTCTTATACATCTGCCAAATATCAT 8843002 >seq23 Length=24341844 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559 ||||| || || || | |||||| |||||||| | || ||||||||||||| || || Sbjct 8996045 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGCCCAGGCATTAATCCTCGTTTCTTG 8996104 Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619 | ||| ||||| || ||||| | || |||||||| || || || ||||| ||||| || Sbjct 8996105 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACGGCTGCAAAGGCT 8996164 Query 21620 AC 21621 || Sbjct 8996165 AC 8996166 >seq9 Length=34412642 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 || ||||||| ||||| || | ||| ||||||||| ||| | ||||| | | | Sbjct 15817994 TTCAAAAATCTGCATCCAAGGTGAAGACATTATCTGTGGTTTCCGCCATAACTGCAAAAC 15817935 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| || ||||| |||||| || |||||||| || ||||| || || || || Sbjct 15817934 GCTGATACTCTGAAACTCGTTTTTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTT 15817875 Query 21246 CCATAAAATCAAATGGATTTTC 21267 ||||||||||||| |||||||| Sbjct 15817874 CCATAAAATCAAAGGGATTTTC 15817853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531858759890520