Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq87 176 5e-39
seq23 89.7 5e-13
seq9 89.7 5e-13
>seq87
Length=11743621
Score = 176 bits (194), Expect = 5e-39
Identities = 547/840 (65%), Gaps = 12/840 (1%)
Strand=Plus/Plus
Query 21200 ACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCCATAAAATCAAAT 21259
||||| || ||||| || || || | |||||| ||| ||| |||||||| ||||||
Sbjct 8842170 ACTCTCTTCTCGAAGAAGTTAGTTCTCCCTTCCTGTGAAATATTCTCCATAAAGTCAAAT 8842229
Query 21260 GGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAATCTATCTGCTACA 21319
|||||||| | | |||| || ||| |||||||||| | || ||| |||||||||
Sbjct 8842230 GGATTTTCTACTCTGAATACCTTGTTAAAACCCAGTTCCAGCATTAGTCTCTCTGCTACA 8842289
Query 21320 AATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTACAGGAAGAGCT 21379
| | || || || |||||| |||||||| | ||| | || ||| | | ||
Sbjct 8842290 ACG-CAATGTACTGCTTCATTAAAGTGCAATTCATTCTGATAAGCTTCACATGCAAGGCC 8842348
Query 21380 TTTGTCAAAAAAGAT--TTTTCTATAGAGACGGCTTCAACAATTATATTTATTATCCTA- 21436
| || || || | | |||||| || || | || |||||| | | ||| ||
Sbjct 8842349 TCAGT--AAGGAGCTCCTATTCTATCCTAACAGCATTAATAATTATTTCTTTTACTCTCT 8842406
Query 21437 GATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAATCACAATGCAAA 21496
| | | ||| | | || ||||| ||| | || | ||| ||||| || |||
Sbjct 8842407 GCTCCAA-AGGTTTGTGTAGCAAGTGTTTGAACGCTATGCAGGTAAAGTCACAGTGTAAA 8842465
Query 21497 CCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTT 21556
| ||||| || || || |||||||| ||| |||| | || ||||||||||||| ||
Sbjct 8842466 CTCTCATCTCTGCTAATGAATTCATTGGAACATGTGAGGCCAGGCATTAATCCTCGTTTC 8842525
Query 21557 TTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAAT 21616
|| | || ||||| || ||||| | || |||||||| || || || | | |||||
Sbjct 8842526 TTGAGTCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTATTGGGGCAAAG 8842585
Query 21617 GCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTT 21676
|| || | | ||| || |||| |||||| ||| ||||| | ||||| | |
Sbjct 8842586 GCTACATCACACTTACCATAGGTAGCTTCTTTTTCCCCGATCCAATGCAAGGCCCAATCT 8842645
Query 21677 GCCTT-TTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATGAtttttttCATC 21735
||||| |||||| | |||| ||||| ||||| || || || ||| | |||| |
Sbjct 8842646 GCCTTCTTCTTT-ACACAAGGCATTGT-TCAATGGCATTGAAGAGAAACTCCCTTTCCTT 8842703
Query 21736 TACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTAT 21795
||| | ||| | | ||||||||||||||||| ||||| ||
Sbjct 8842704 GGAATCTTTAATGTAAGTGTCAGTAAGGAGATTGTACATTTCAGAATGTATGTTTTCCAT 8842763
Query 21796 CGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTCGGAATAAAATCG 21855
|| || || || || || | ||| | || |||| | ||||| | ||||||
Sbjct 8842764 TGCAATTTGGAAGCCATAGAGACAGCAGGCTTCTGTAATCTGAACTTGTTGGCTAAATCG 8842823
Query 21856 TTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTT 21915
|||||||||||| | ||| ||||| || || ||||| || |||| | || |
Sbjct 8842824 CACCAGCAAGTTTTCATTCATTATGCCATCGCTTGCTGCAAAGAAAGCCAGAACATGTGA 8842883
Query 21916 TATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAAT-CTAATAAATCTTTTGATAAAT 21974
| ||||||||| ||| ||| | | || ||| | || | | || || || | ||
Sbjct 8842884 TGTAAAATATCTTTCTTTAGGCTTCAGGGCTTCCCAGTGCTGA-ATGTCCTTGGAAAGAT 8842942
Query 21975 CTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCAT 22034
| | || |||| ||||||||| || ||| || |||||||| ||| |||||||
Sbjct 8842943 CCAGCTCCTCAGCAGTCCAAAAGGAAGGCTCAGCTTTCTTATACATCTGCCAAATATCAT 8843002
>seq23
Length=24341844
Score = 89.7 bits (98), Expect = 5e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559
||||| || || || | |||||| |||||||| | || ||||||||||||| || ||
Sbjct 8996045 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGCCCAGGCATTAATCCTCGTTTCTTG 8996104
Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619
| ||| ||||| || ||||| | || |||||||| || || || ||||| ||||| ||
Sbjct 8996105 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACGGCTGCAAAGGCT 8996164
Query 21620 AC 21621
||
Sbjct 8996165 AC 8996166
>seq9
Length=34412642
Score = 89.7 bits (98), Expect = 5e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185
|| ||||||| ||||| || | ||| ||||||||| ||| | ||||| | | |
Sbjct 15817994 TTCAAAAATCTGCATCCAAGGTGAAGACATTATCTGTGGTTTCCGCCATAACTGCAAAAC 15817935
Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245
||||| || ||||| |||||| || |||||||| || ||||| || || || ||
Sbjct 15817934 GCTGATACTCTGAAACTCGTTTTTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTT 15817875
Query 21246 CCATAAAATCAAATGGATTTTC 21267
||||||||||||| ||||||||
Sbjct 15817874 CCATAAAATCAAAGGGATTTTC 15817853
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531858759890520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |