Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq40 105 6e-18 seq131 98.7 9e-16 seq102 84.2 2e-11 seq88 82.4 7e-11 >seq40 Length=19935044 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 |||||||||||| || |||||||| || | ||||| || || ||||||||||| Sbjct 1219236 GGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCC 1219177 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 ||| |||| | | ||||||||| |||||||| |||||||| || ||| || ||| Sbjct 1219176 TGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTAGCCTT 1219117 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 | | ||| | || || ||| || | || | ||| | ||| || || ||||| || Sbjct 1219116 TACGTTCTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCCGTTAGGGT 1219057 Query 131217 TTTTACGAAAATCTGCAT 131234 ||||||||||| ||||| Sbjct 1219056 CTTTACGAAAATTTGCAT 1219039 >seq131 Length=8015323 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | ||| ||||| || | || | || ||||| || || |||||||| || | Sbjct 2518415 CCTCCCCTCAAGCGCAGGACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2518474 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || ||||||||||| || |||| || | ||||||||| ||||| Sbjct 2518475 AGGGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGA 2518534 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | ||| | || || ||| ||| | Sbjct 2518535 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACT 2518594 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || |||||||| | || || ||||| |||||||| Sbjct 2518595 TCAAGGGTGATTGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 2518641 >seq102 Length=10627846 Score = 84.2 bits (92), Expect = 2e-11 Identities = 183/266 (69%), Gaps = 11/266 (4%) Strand=Plus/Minus Query 145530 TAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGC-AACTTTTCAAAGTCA 145588 |||||||||||||||| | || || || || || | | | || ||||| | ||||||| Sbjct 1346636 TAATTTTATTCAAGTTATGGACAACAACTTTGGTGACTT-CAGCTAACTTCTTAAAGTCA 1346578 Query 145589 AACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACT 145648 | | | | | | || ||| |||| | ||| | || ||||| ||||||||| Sbjct 1346577 TAT-GTGTGTTCTGATGTGACATACA--TATTCAGGGCCAGGGAAGCCAAGTTACAAACT 1346521 Query 145649 GCCGTCTCCTCGGCGTCGCT-GTAT--TGTACGATCTCGGCGCACAAATTGCTACATTTG 145705 || ||| || | ||| |||| | ||| || || | ||||| ||||| |||||| Sbjct 1346520 GCAACCTCATCT---TTGCTAGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTG 1346464 Query 145706 ATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTAC 145765 || |||||||| || ||| | || || |||| || | | |||||||||||||||||| Sbjct 1346463 ATCGTTCCCAGGTTCTGCCGGTTGCTCTTCCAATTATAGGAATCCTTGTAGAGCATGTAC 1346404 Query 145766 GGTCCGCCAGTCTCCACCTGCGTCTC 145791 | || ||||| |||| | ||| Sbjct 1346403 AGAGTACCTGTCTCTGCCTGAGACTC 1346378 >seq88 Length=11737398 Score = 82.4 bits (90), Expect = 7e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 145675 TACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTT 145734 ||| || || | ||||| ||||| |||||||| |||||||| || ||||| || || || Sbjct 370068 TACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTTCCCAGGTTCTGCTGGTTGCTCTT 370127 Query 145735 CCTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767 || || || | |||||||||||||||||||| Sbjct 370128 CCGATTACAGGAATCCTTGTAGAGCATGTACGG 370160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471975493288320