Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq40 105 6e-18
seq131 98.7 9e-16
seq102 84.2 2e-11
seq88 82.4 7e-11
>seq40
Length=19935044
Score = 105 bits (116), Expect = 6e-18
Identities = 142/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096
|||||||||||| || |||||||| || | ||||| || || |||||||||||
Sbjct 1219236 GGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCC 1219177
Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156
||| |||| | | ||||||||| |||||||| |||||||| || ||| || |||
Sbjct 1219176 TGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTAGCCTT 1219117
Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216
| | ||| | || || ||| || | || | ||| | ||| || || ||||| ||
Sbjct 1219116 TACGTTCTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCCGTTAGGGT 1219057
Query 131217 TTTTACGAAAATCTGCAT 131234
||||||||||| |||||
Sbjct 1219056 CTTTACGAAAATTTGCAT 1219039
>seq131
Length=8015323
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
|| || | ||| ||||| || | || | || ||||| || || |||||||| || |
Sbjct 2518415 CCTCCCCTCAAGCGCAGGACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2518474
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| || || || ||||||||||| || |||| || | ||||||||| |||||
Sbjct 2518475 AGGGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGA 2518534
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| ||||| ||||| ||| || ||||| | ||| | || || ||| ||| |
Sbjct 2518535 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACT 2518594
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||| | || |||||||| | || || ||||| ||||||||
Sbjct 2518595 TCAAGGGTGATTGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 2518641
>seq102
Length=10627846
Score = 84.2 bits (92), Expect = 2e-11
Identities = 183/266 (69%), Gaps = 11/266 (4%)
Strand=Plus/Minus
Query 145530 TAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGC-AACTTTTCAAAGTCA 145588
|||||||||||||||| | || || || || || | | | || ||||| | |||||||
Sbjct 1346636 TAATTTTATTCAAGTTATGGACAACAACTTTGGTGACTT-CAGCTAACTTCTTAAAGTCA 1346578
Query 145589 AACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACT 145648
| | | | | | || ||| |||| | ||| | || ||||| |||||||||
Sbjct 1346577 TAT-GTGTGTTCTGATGTGACATACA--TATTCAGGGCCAGGGAAGCCAAGTTACAAACT 1346521
Query 145649 GCCGTCTCCTCGGCGTCGCT-GTAT--TGTACGATCTCGGCGCACAAATTGCTACATTTG 145705
|| ||| || | ||| |||| | ||| || || | ||||| ||||| ||||||
Sbjct 1346520 GCAACCTCATCT---TTGCTAGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTG 1346464
Query 145706 ATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTAC 145765
|| |||||||| || ||| | || || |||| || | | ||||||||||||||||||
Sbjct 1346463 ATCGTTCCCAGGTTCTGCCGGTTGCTCTTCCAATTATAGGAATCCTTGTAGAGCATGTAC 1346404
Query 145766 GGTCCGCCAGTCTCCACCTGCGTCTC 145791
| || ||||| |||| | |||
Sbjct 1346403 AGAGTACCTGTCTCTGCCTGAGACTC 1346378
>seq88
Length=11737398
Score = 82.4 bits (90), Expect = 7e-11
Identities = 74/93 (80%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 145675 TACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTT 145734
||| || || | ||||| ||||| |||||||| |||||||| || ||||| || || ||
Sbjct 370068 TACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTTCCCAGGTTCTGCTGGTTGCTCTT 370127
Query 145735 CCTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767
|| || || | ||||||||||||||||||||
Sbjct 370128 CCGATTACAGGAATCCTTGTAGAGCATGTACGG 370160
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471975493288320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |