Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq131 96.9 3e-15
seq40 87.8 1e-12
>seq131
Length=8015323
Score = 96.9 bits (106), Expect = 3e-15
Identities = 152/216 (70%), Gaps = 4/216 (2%)
Strand=Plus/Plus
Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782
||| |||| |||||||||||||| || || ||||||||||| | || ||| | ||
Sbjct 2518429 CAGGACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGTCCATC 2518488
Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842
|||| || ||||| ||| | || | || ||| ||||| ||| | ||| || |||||
Sbjct 2518489 TTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTC 2518548
Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900
|| ||||| ||| || | | | ||||| | |||||| ||| | ||||||
Sbjct 2518549 TTGGATCTTTGC--CTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATT 2518606
Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936
|| || ||||||| || || || || |||||||||
Sbjct 2518607 GTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATT 2518642
>seq40
Length=19935044
Score = 87.8 bits (96), Expect = 1e-12
Identities = 146/209 (70%), Gaps = 4/209 (2%)
Strand=Plus/Minus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
||||| || |||||||| || ||||||||||| | | || | | || |||| ||
Sbjct 1219241 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 1219182
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850
||||| ||| | || |||| ||| ||||| ||| | ||| ||||| || || ||
Sbjct 1219181 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTA 1219122
Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910
|| ||| || | | | ||||| | ||| ||| |||| ||||||||| ||||| |
Sbjct 1219121 GC--CTTTACGTTCTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCCG 1219064
Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTTG 16939
| || || || || ||||| |||||| ||
Sbjct 1219063 TTAGGGTCTTTACGAAAATTTGCATTCTG 1219035
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405056783285770
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |