Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq131 96.9 3e-15 seq40 87.8 1e-12 >seq131 Length=8015323 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| |||||||||||||| || || ||||||||||| | || ||| | || Sbjct 2518429 CAGGACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGTCCATC 2518488 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| ||| | || | || ||| ||||| ||| | ||| || ||||| Sbjct 2518489 TTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTC 2518548 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || ||||| ||| || | | | ||||| | |||||| ||| | |||||| Sbjct 2518549 TTGGATCTTTGC--CTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATT 2518606 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || || ||||||| || || || || ||||||||| Sbjct 2518607 GTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATT 2518642 >seq40 Length=19935044 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| || |||||||| || ||||||||||| | | || | | || |||| || Sbjct 1219241 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 1219182 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| ||| | || |||| ||| ||||| ||| | ||| ||||| || || || Sbjct 1219181 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTA 1219122 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | ||||| | ||| ||| |||| ||||||||| ||||| | Sbjct 1219121 GC--CTTTACGTTCTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCCG 1219064 Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTTG 16939 | || || || || ||||| |||||| || Sbjct 1219063 TTAGGGTCTTTACGAAAATTTGCATTCTG 1219035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405056783285770