Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq152 118 7e-22 seq386 116 2e-21 seq260 109 4e-19 seq416 104 2e-17 seq88 104 2e-17 seq12 100 2e-16 seq65 96.9 2e-15 seq118 95.1 8e-15 seq86 93.3 3e-14 seq22 93.3 3e-14 seq130 89.7 3e-13 seq14 86.0 4e-12 seq233 82.4 5e-11 seq35 82.4 5e-11 >seq152 Length=7019602 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 || |||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 4595806 AAACCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 4595865 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | ||| |||||||||||||||||||||||||||| Sbjct 4595866 TCATCTATTCATGCGCGTCACTAATTAGATGACGA 4595900 >seq386 Length=416272 Score = 116 bits (128), Expect = 2e-21 Identities = 82/94 (87%), Gaps = 5/94 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||| | |||||||| ||||| || |||||||| Sbjct 414531 AAGCCCGTTCCCTTGGCTGTGGTTTCGTTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 414472 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACG 25990 | |||| |||||||| |||||||||||||||||| Sbjct 414471 TCATCCATTCATGCGGGTCACTAATTAGATGACG 414438 >seq260 Length=2567997 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||||||||||||| ||| |||||||| ||||| || || ||||| Sbjct 1755566 AAGCCCATTCCCTTGGCTGTGGTTTTGCTGGATAGTAGGTAGGGACAGTGGGAACCTCGT 1755507 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||||| |||||||||||||||||| Sbjct 1755506 TCATCCATTCATGCGCATCACTAATTAGATGACGA 1755472 >seq416 Length=321153 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 257040 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 256981 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| | || |||||||||||| || Sbjct 256980 TCATCCATTCATGTCCCTCGCTAATTAGATGAGGA 256946 >seq88 Length=11737398 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||| ||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 6746531 AAGCCCATTCCATTGGCTGTGGTTTCGCTCGATAGTAGGTAGGGACAGTGGAAATCTCGT 6746590 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||| ||||||||||||||||||||| Sbjct 6746591 TCATCCATTCACATGCGTCACTAATTAGATGACGA 6746625 >seq12 Length=31416278 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| |||||||||||||||||||| || |||||||| ||||| || ||||| || Sbjct 22623395 AAGCCTGTTCCCTTGGCTGTGGTTTCACTGGATAGTAGGTAGGGACAGTGGGAATCTTGT 22623454 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||| | ||||||||||||||| || Sbjct 22623455 TTATCCATTCATGCACATCACTAATTAGATGATGA 22623489 >seq65 Length=15048982 Score = 96.9 bits (106), Expect = 2e-15 Identities = 80/96 (83%), Gaps = 5/96 (5%) Strand=Plus/Minus Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG--GGT---AATCTCG 25955 ||||||||||| |||| |||||||||| || |||||||| ||||| ||| ||||| | Sbjct 629389 TAAGCCCGTTCTCTTGACTGTGGTTTCACTGGATAGTAGGTAGGGATGGTAGGAATCTTG 629330 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || |||| ||||| ||| ||||||||||||||| || Sbjct 629329 TTTATCCATTCATACGCATCACTAATTAGATGATGA 629294 >seq118 Length=9094482 Score = 95.1 bits (104), Expect = 8e-15 Identities = 76/92 (83%), Gaps = 5/92 (5%) Strand=Plus/Minus Query 25905 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAA 25959 |||||||||||||||| ||||| || ||||||||||||| |||||||| ||| | Sbjct 7285279 CCCGTTCCCTTGGCTGAAGTTTCACTGGATAGTAGATAGGAACAATGGTAATCTTGTTCA 7285220 Query 25960 TCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||| |||||| | |||||||||||||||| || Sbjct 7285219 TCCATTCATGTGTGTCACTAATTAGATGATGA 7285188 >seq86 Length=11983830 Score = 93.3 bits (102), Expect = 3e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 4587506 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCG 4587564 >seq22 Length=24477914 Score = 93.3 bits (102), Expect = 3e-14 Identities = 77/94 (82%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 25903 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTT 25957 ||| ||||||| |||||||| |||| || |||||||| ||||| || |||||| || Sbjct 9292102 AGCTCGTTCCCGTGGCTGTGTTTTCTCTGGATAGTAGGTAGGGACAGTGGAAATCTCATT 9292161 Query 25958 AATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| ||||||| | |||||||||||||||||| Sbjct 9292162 CATCCATTCATGCCCATCACTAATTAGATGACGA 9292195 >seq130 Length=8343343 Score = 89.7 bits (98), Expect = 3e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 19945 TTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTC 20004 |||||||| ||||||||||||||||||||||| | | |||||||||| ||||||||||| Sbjct 5097414 TTCTCTCTTTTCAAAGTTCTTTTCAACTTTCCTTTATGGTACTTGTTGACTATCGGTCTC 5097473 Query 20005 GCGGTAATATTTAGCCTTA 20023 | | |||| ||||||| Sbjct 5097474 TTGCTGGTATTCAGCCTTA 5097492 >seq14 Length=28372475 Score = 86.0 bits (94), Expect = 4e-12 Identities = 76/95 (80%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||| ||||||||||||||| ||||| || |||| || ||||| || ||||| || Sbjct 1552005 AAGCTCGTTCCCTTGGCTGTAGTTTCTCTGCATAGCAGGTAGGGACAGTGGGAATCTTGT 1551946 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | ||| |||||||||||||||||||| |||| || Sbjct 1551945 TCGTCCATTCATGCGCGTCACTAATTAAATGATGA 1551911 >seq233 Length=3362228 Score = 82.4 bits (90), Expect = 5e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 19951 CTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTA 20010 |||| |||| |||||||||||||||||| | |||||||||| ||||| ||||| | | Sbjct 3200262 CTCTCCAAAATTCTTTTCAACTTTCCCTTAAGGTACTTGTTGACTATCAGTCTCATGATG 3200203 Query 20011 ATATTTAGCCTTA 20023 ||||||||||||| Sbjct 3200202 ATATTTAGCCTTA 3200190 >seq35 Length=20596549 Score = 82.4 bits (90), Expect = 5e-11 Identities = 72/90 (80%), Gaps = 5/90 (6%) Strand=Plus/Plus Query 25907 CGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATC 25961 |||||| |||||||||||||| || ||| |||| ||||| || |||||| |||||| Sbjct 105465 CGTTCCTTTGGCTGTGGTTTCACTGGATTGTAGGTAGGGACAGTGGGAATCTCCTTAATC 105524 Query 25962 CTTTCATGCGCGTCACTAATTAGATGACGA 25991 | ||| ||||| ||||||| | ||||| || Sbjct 105525 CATTCGTGCGCATCACTAACTGGATGAGGA 105554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334921388445413