Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq152 118 7e-22
seq386 116 2e-21
seq260 109 4e-19
seq416 104 2e-17
seq88 104 2e-17
seq12 100 2e-16
seq65 96.9 2e-15
seq118 95.1 8e-15
seq86 93.3 3e-14
seq22 93.3 3e-14
seq130 89.7 3e-13
seq14 86.0 4e-12
seq233 82.4 5e-11
seq35 82.4 5e-11
>seq152
Length=7019602
Score = 118 bits (130), Expect = 7e-22
Identities = 83/95 (87%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|| |||||||||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 4595806 AAACCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 4595865
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| ||| ||||||||||||||||||||||||||||
Sbjct 4595866 TCATCTATTCATGCGCGTCACTAATTAGATGACGA 4595900
>seq386
Length=416272
Score = 116 bits (128), Expect = 2e-21
Identities = 82/94 (87%), Gaps = 5/94 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||| | |||||||| ||||| || ||||||||
Sbjct 414531 AAGCCCGTTCCCTTGGCTGTGGTTTCGTTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 414472
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACG 25990
| |||| |||||||| ||||||||||||||||||
Sbjct 414471 TCATCCATTCATGCGGGTCACTAATTAGATGACG 414438
>seq260
Length=2567997
Score = 109 bits (120), Expect = 4e-19
Identities = 81/95 (85%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||| |||||||||||||||||| ||| |||||||| ||||| || || |||||
Sbjct 1755566 AAGCCCATTCCCTTGGCTGTGGTTTTGCTGGATAGTAGGTAGGGACAGTGGGAACCTCGT 1755507
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||||| ||||||||||||||||||
Sbjct 1755506 TCATCCATTCATGCGCATCACTAATTAGATGACGA 1755472
>seq416
Length=321153
Score = 104 bits (114), Expect = 2e-17
Identities = 80/95 (84%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 257040 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 256981
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| |||||| | || |||||||||||| ||
Sbjct 256980 TCATCCATTCATGTCCCTCGCTAATTAGATGAGGA 256946
>seq88
Length=11737398
Score = 104 bits (114), Expect = 2e-17
Identities = 80/95 (84%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||| |||| ||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 6746531 AAGCCCATTCCATTGGCTGTGGTTTCGCTCGATAGTAGGTAGGGACAGTGGAAATCTCGT 6746590
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| |||| |||||||||||||||||||||
Sbjct 6746591 TCATCCATTCACATGCGTCACTAATTAGATGACGA 6746625
>seq12
Length=31416278
Score = 100 bits (110), Expect = 2e-16
Identities = 79/95 (83%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||||| |||||||||||||||||||| || |||||||| ||||| || ||||| ||
Sbjct 22623395 AAGCCTGTTCCCTTGGCTGTGGTTTCACTGGATAGTAGGTAGGGACAGTGGGAATCTTGT 22623454
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||| | ||||||||||||||| ||
Sbjct 22623455 TTATCCATTCATGCACATCACTAATTAGATGATGA 22623489
>seq65
Length=15048982
Score = 96.9 bits (106), Expect = 2e-15
Identities = 80/96 (83%), Gaps = 5/96 (5%)
Strand=Plus/Minus
Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG--GGT---AATCTCG 25955
||||||||||| |||| |||||||||| || |||||||| ||||| ||| ||||| |
Sbjct 629389 TAAGCCCGTTCTCTTGACTGTGGTTTCACTGGATAGTAGGTAGGGATGGTAGGAATCTTG 629330
Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|| |||| ||||| ||| ||||||||||||||| ||
Sbjct 629329 TTTATCCATTCATACGCATCACTAATTAGATGATGA 629294
>seq118
Length=9094482
Score = 95.1 bits (104), Expect = 8e-15
Identities = 76/92 (83%), Gaps = 5/92 (5%)
Strand=Plus/Minus
Query 25905 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAA 25959
|||||||||||||||| ||||| || ||||||||||||| |||||||| ||| |
Sbjct 7285279 CCCGTTCCCTTGGCTGAAGTTTCACTGGATAGTAGATAGGAACAATGGTAATCTTGTTCA 7285220
Query 25960 TCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
||| |||||| | |||||||||||||||| ||
Sbjct 7285219 TCCATTCATGTGTGTCACTAATTAGATGATGA 7285188
>seq86
Length=11983830
Score = 93.3 bits (102), Expect = 3e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 4587506 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCG 4587564
>seq22
Length=24477914
Score = 93.3 bits (102), Expect = 3e-14
Identities = 77/94 (82%), Gaps = 5/94 (5%)
Strand=Plus/Plus
Query 25903 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTT 25957
||| ||||||| |||||||| |||| || |||||||| ||||| || |||||| ||
Sbjct 9292102 AGCTCGTTCCCGTGGCTGTGTTTTCTCTGGATAGTAGGTAGGGACAGTGGAAATCTCATT 9292161
Query 25958 AATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||| ||||||| | ||||||||||||||||||
Sbjct 9292162 CATCCATTCATGCCCATCACTAATTAGATGACGA 9292195
>seq130
Length=8343343
Score = 89.7 bits (98), Expect = 3e-13
Identities = 67/79 (85%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 19945 TTCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTC 20004
|||||||| ||||||||||||||||||||||| | | |||||||||| |||||||||||
Sbjct 5097414 TTCTCTCTTTTCAAAGTTCTTTTCAACTTTCCTTTATGGTACTTGTTGACTATCGGTCTC 5097473
Query 20005 GCGGTAATATTTAGCCTTA 20023
| | |||| |||||||
Sbjct 5097474 TTGCTGGTATTCAGCCTTA 5097492
>seq14
Length=28372475
Score = 86.0 bits (94), Expect = 4e-12
Identities = 76/95 (80%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||| ||||||||||||||| ||||| || |||| || ||||| || ||||| ||
Sbjct 1552005 AAGCTCGTTCCCTTGGCTGTAGTTTCTCTGCATAGCAGGTAGGGACAGTGGGAATCTTGT 1551946
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| ||| |||||||||||||||||||| |||| ||
Sbjct 1551945 TCGTCCATTCATGCGCGTCACTAATTAAATGATGA 1551911
>seq233
Length=3362228
Score = 82.4 bits (90), Expect = 5e-11
Identities = 62/73 (85%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 19951 CTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTA 20010
|||| |||| |||||||||||||||||| | |||||||||| ||||| ||||| | |
Sbjct 3200262 CTCTCCAAAATTCTTTTCAACTTTCCCTTAAGGTACTTGTTGACTATCAGTCTCATGATG 3200203
Query 20011 ATATTTAGCCTTA 20023
|||||||||||||
Sbjct 3200202 ATATTTAGCCTTA 3200190
>seq35
Length=20596549
Score = 82.4 bits (90), Expect = 5e-11
Identities = 72/90 (80%), Gaps = 5/90 (6%)
Strand=Plus/Plus
Query 25907 CGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATC 25961
|||||| |||||||||||||| || ||| |||| ||||| || |||||| ||||||
Sbjct 105465 CGTTCCTTTGGCTGTGGTTTCACTGGATTGTAGGTAGGGACAGTGGGAATCTCCTTAATC 105524
Query 25962 CTTTCATGCGCGTCACTAATTAGATGACGA 25991
| ||| ||||| ||||||| | ||||| ||
Sbjct 105525 CATTCGTGCGCATCACTAACTGGATGAGGA 105554
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334921388445413
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |