Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq87 205 1e-47
seq23 96.9 4e-15
>seq87
Length=11743621
Score = 205 bits (226), Expect = 1e-47
Identities = 493/738 (67%), Gaps = 6/738 (1%)
Strand=Plus/Plus
Query 92917 CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976
|| || ||| || ||||||| | |||||||| ||| ||| |||||||||| |
Sbjct 8842271 CATTAGTCTCTCTGCTACAACG-CAATGTACTGCTTCATTAAAGTGCAATTCATTCTGAT 8842329
Query 92977 AAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAA 93036
||| ||| | | || || || | || || | || || ||| || | | |
Sbjct 8842330 AAGCTTCACATGCAAGGCCTCAGTAAGGAGCTCCTATTCTATCCTAACAGCATTAATAAT 8842389
Query 93037 GATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGC 93096
|||||| ||||||| | ||||| |||| | | ||| || || ||| |
Sbjct 8842390 TATTTCTTTTACTCTCTGCTCCAAAGGTTTGTGTAGCAAGTGTTTGAACGCTATGCAGGT 8842449
Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATA-TCAACTCATTGCTGAATGTTAAACCTG 93155
|||||| ||||||| || |||| || || | || |||||| |||| | || |
Sbjct 8842450 AAAGTCACAGTGTAAACTCTCATCTC-TGCTAATGAATTCATTGGAACATGTGAGGCCAG 8842508
Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215
| | | ||||||||||||||| || ||||| || |||||| ||||||||| || || |
Sbjct 8842509 GCATTAATCCTCGTTTCTTGAGTCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTC 8842568
Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCC 93275
|||| | | ||||| || ||| || | || | | || || | |||||
Sbjct 8842569 CTTCTATTGGGGCAAAGGCTACATCACACTTACCATAGGTAGCTTCTTTTTCCCCGATCC 8842628
Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335
| | || |||||||| || || ||||| | |||||| | |||| | || || || || |
Sbjct 8842629 AATGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTT-CAATGGCATTGAAGA 8842687
Query 93336 GGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAG 93395
| | || | || | |||||| ||||| || || | | ||| ||||||||||
Sbjct 8842688 GAAACTCCCTTTCCTTGGAATCTTTAATGTAAGTGTCAGTAAGGAGATTGTACATTTCAG 8842747
Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA 93455
|||| | || ||||||||||||||||| || |||| ||| | ||||| || ||||| |
Sbjct 8842748 AATGTATGTTTTCCATTGCAATTTGGAAGCCATAGAGACAGCAGGCTTCTGTAATCTGAA 8842807
Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515
||| ||| ||||| | | | | |||||||| | ||| |||||| ||||||||| |
Sbjct 8842808 CTTGTTGGCTAAATCGCACCAGCAAGTTTTCATTCATTATGCCATCGCTTGCTGCAAAGA 8842867
Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGAT 93574
|||||| | ||| | |||||| | | || | | || || ||||| | | ||
Sbjct 8842868 AAGCCAGAACATGTGATGTAAAATATCTTTCTTTAGGCTTCAGGGCTTCCCAGTGCTGA- 8842926
Query 93575 AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTAC 93634
| || || |||||||| | || || |||||||||| || | || ||||| || |||
Sbjct 8842927 ATGTCCTTGGAAAGATCCAGCTCCTCAGCAGTCCAAAAGGAAGGCTCAGCTTTCTTATAC 8842986
Query 93635 ATATCCCATATGTCTTGA 93652
|| | ||| || || |||
Sbjct 8842987 ATCTGCCAAATATCATGA 8843004
>seq23
Length=24341844
Score = 96.9 bits (106), Expect = 4e-15
Identities = 89/113 (79%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193
|||||| ||||| | || || | | |||||||||||||||||| ||||| || |||
Sbjct 8996063 TCATTGGAAAATGTGAGCCCAGGCATTAATCCTCGTTTCTTGAGCCAGAATATCGATGCA 8996122
Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246
||| ||||||||| || || ||||| ||||||||||| || |||| ||| ||
Sbjct 8996123 AAAGAACCAGAAAAGAAGATTCCTTCTACGGCTGCAAAGGCTACAACACGCTC 8996175
Score = 95.1 bits (104), Expect = 1e-14
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412
|||||| ||||| || || || | ||| ||||||||||||||| | || |||||
Sbjct 8998513 GAATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATG 8998572
Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTC 93472
||||||||||| || |||||||| | ||||| || ||||| |||||||| ||||| |
Sbjct 8998573 GCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGC 8998632
Query 93473 TCTAC 93477
|| ||
Sbjct 8998633 TCCAC 8998637
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556816787114520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |