Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq87 205 1e-47 seq23 96.9 4e-15 >seq87 Length=11743621 Score = 205 bits (226), Expect = 1e-47 Identities = 493/738 (67%), Gaps = 6/738 (1%) Strand=Plus/Plus Query 92917 CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976 || || ||| || ||||||| | |||||||| ||| ||| |||||||||| | Sbjct 8842271 CATTAGTCTCTCTGCTACAACG-CAATGTACTGCTTCATTAAAGTGCAATTCATTCTGAT 8842329 Query 92977 AAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAA 93036 ||| ||| | | || || || | || || | || || ||| || | | | Sbjct 8842330 AAGCTTCACATGCAAGGCCTCAGTAAGGAGCTCCTATTCTATCCTAACAGCATTAATAAT 8842389 Query 93037 GATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGC 93096 |||||| ||||||| | ||||| |||| | | ||| || || ||| | Sbjct 8842390 TATTTCTTTTACTCTCTGCTCCAAAGGTTTGTGTAGCAAGTGTTTGAACGCTATGCAGGT 8842449 Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATA-TCAACTCATTGCTGAATGTTAAACCTG 93155 |||||| ||||||| || |||| || || | || |||||| |||| | || | Sbjct 8842450 AAAGTCACAGTGTAAACTCTCATCTC-TGCTAATGAATTCATTGGAACATGTGAGGCCAG 8842508 Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215 | | | ||||||||||||||| || ||||| || |||||| ||||||||| || || | Sbjct 8842509 GCATTAATCCTCGTTTCTTGAGTCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATTC 8842568 Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCC 93275 |||| | | ||||| || ||| || | || | | || || | ||||| Sbjct 8842569 CTTCTATTGGGGCAAAGGCTACATCACACTTACCATAGGTAGCTTCTTTTTCCCCGATCC 8842628 Query 93276 ATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATA 93335 | | || |||||||| || || ||||| | |||||| | |||| | || || || || | Sbjct 8842629 AATGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGTT-CAATGGCATTGAAGA 8842687 Query 93336 GGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAG 93395 | | || | || | |||||| ||||| || || | | ||| |||||||||| Sbjct 8842688 GAAACTCCCTTTCCTTGGAATCTTTAATGTAAGTGTCAGTAAGGAGATTGTACATTTCAG 8842747 Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA 93455 |||| | || ||||||||||||||||| || |||| ||| | ||||| || ||||| | Sbjct 8842748 AATGTATGTTTTCCATTGCAATTTGGAAGCCATAGAGACAGCAGGCTTCTGTAATCTGAA 8842807 Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515 ||| ||| ||||| | | | | |||||||| | ||| |||||| ||||||||| | Sbjct 8842808 CTTGTTGGCTAAATCGCACCAGCAAGTTTTCATTCATTATGCCATCGCTTGCTGCAAAGA 8842867 Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGAT 93574 |||||| | ||| | |||||| | | || | | || || ||||| | | || Sbjct 8842868 AAGCCAGAACATGTGATGTAAAATATCTTTCTTTAGGCTTCAGGGCTTCCCAGTGCTGA- 8842926 Query 93575 AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTAC 93634 | || || |||||||| | || || |||||||||| || | || ||||| || ||| Sbjct 8842927 ATGTCCTTGGAAAGATCCAGCTCCTCAGCAGTCCAAAAGGAAGGCTCAGCTTTCTTATAC 8842986 Query 93635 ATATCCCATATGTCTTGA 93652 || | ||| || || ||| Sbjct 8842987 ATCTGCCAAATATCATGA 8843004 >seq23 Length=24341844 Score = 96.9 bits (106), Expect = 4e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| ||||| | || || | | |||||||||||||||||| ||||| || ||| Sbjct 8996063 TCATTGGAAAATGTGAGCCCAGGCATTAATCCTCGTTTCTTGAGCCAGAATATCGATGCA 8996122 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||| ||||||||| || || ||||| ||||||||||| || |||| ||| || Sbjct 8996123 AAAGAACCAGAAAAGAAGATTCCTTCTACGGCTGCAAAGGCTACAACACGCTC 8996175 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412 |||||| ||||| || || || | ||| ||||||||||||||| | || ||||| Sbjct 8998513 GAATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATG 8998572 Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTC 93472 ||||||||||| || |||||||| | ||||| || ||||| |||||||| ||||| | Sbjct 8998573 GCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGC 8998632 Query 93473 TCTAC 93477 || || Sbjct 8998633 TCCAC 8998637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556816787114520