Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq131 114 1e-20
seq59 91.5 1e-13
seq175 86.0 5e-12
>seq131
Length=8015323
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || || |||||||| || |||| |||||||| || |||
Sbjct 2518641 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACAATCACCCTTGAAGTAGAGCCCAGT 2518582
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || || |||| ||| || ||||||||||| || ||||| || || ||
Sbjct 2518581 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 2518522
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| | | || ||||| ||||| ||| | || ||| || ||| | || || ||||||
Sbjct 2518521 CAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACCCTGTCTGACTACAAC 2518462
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
|| || ||||| ||||| | || | || |||| ||| | ||||||
Sbjct 2518461 ATCCAGAAAGAGTCCACGCTGCACCTGGTCCTGCGCTTGAGGGGAGGT 2518414
Score = 84.2 bits (92), Expect = 2e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| ||||| ||||| |||||||| |||| ||||| ||||| |||
Sbjct 2520223 ATGCAGATCTTTGTGAAAACCTTAACGGGTAAAACCATCACCCTTGAGGTGGAGCCCAGT 2520164
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | || | |||| ||| || ||||||||||| || || || || || ||
Sbjct 2520163 GACACCATTGAGAACGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAG 2520104
Query 22339 CAACGTCTTATATTTGCCGGCAAACA 22364
|| | | || ||||| || |||||
Sbjct 2520103 CAGAGGTTGATCTTTGCTGGGAAACA 2520078
>seq59
Length=15706754
Score = 91.5 bits (100), Expect = 1e-13
Identities = 144/205 (70%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276
||||||| || ||||| || | | || || || || |||||||||| | || |||
Sbjct 4366368 AGATGCAGATCTTTGTGAAGATCCTCACAGGCAAGACCATCACTCTTGAGTTCGAGCCCA 4366309
Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336
|| | | | | | ||||| ||||| |||||||||||||| || | ||||| |
Sbjct 4366308 GTGACATCATCAAGAACGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCTCCCCCGACC 4366249
Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396
| || ||||| | || | |||||| || | ||||| | | ||| ||| || ||||
Sbjct 4366248 AGCAGCGTCTGACTGTTACAGGCAAAGAGCTGGAGGACAATCACACTCTCT-AGACTACA 4366190
Query 22397 ACATTCAAAAAGAATCCACCATACA 22421
||||||| ||||| |||||||| ||
Sbjct 4366189 ACATTCAGAAAGAGTCCACCATGCA 4366165
>seq175
Length=5584636
Score = 86.0 bits (94), Expect = 5e-12
Identities = 139/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|||||||| |||||||| ||||| ||| || || || |||||||||| | ||| ||
Sbjct 1836296 AAGATGCACATTTTTGTAAAAACCCTAATGGGGAAGACCATCACTCTTGAGGATGAACCC 1836355
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| ||||| | || || | ||| || || || || || || || ||| | || |||
Sbjct 1836356 TCAGATACAATAGAAAATGTAAAAGCCAAGATCCAGGATAAAGAAGGAATTTCTCCTGAT 1836415
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
||||| | || || ||||| |||||| | | || ||| | || | | || |||
Sbjct 1836416 CAACAGAGACTGATCTTTGCTGGCAAAAAACTGGAAGATGGACCTACTTTGTTTGACTAC 1836475
Query 22396 AACATTCAAAAAGAATCCAC 22415
||||||||||| || || ||
Sbjct 1836476 AACATTCAAAAGGAGTCTAC 1836495
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419695655104495
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |