Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq131 114 1e-20 seq59 91.5 1e-13 seq175 86.0 5e-12 >seq131 Length=8015323 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || |||||||| || |||| |||||||| || ||| Sbjct 2518641 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACAATCACCCTTGAAGTAGAGCCCAGT 2518582 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| ||| || ||||||||||| || ||||| || || || Sbjct 2518581 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCAG 2518522 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| ||||| ||| | || ||| || ||| | || || |||||| Sbjct 2518521 CAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACCCTGTCTGACTACAAC 2518462 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||| ||||| | || | || |||| ||| | |||||| Sbjct 2518461 ATCCAGAAAGAGTCCACGCTGCACCTGGTCCTGCGCTTGAGGGGAGGT 2518414 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| ||||| |||||||| |||| ||||| ||||| ||| Sbjct 2520223 ATGCAGATCTTTGTGAAAACCTTAACGGGTAAAACCATCACCCTTGAGGTGGAGCCCAGT 2520164 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| ||| || ||||||||||| || || || || || || Sbjct 2520163 GACACCATTGAGAACGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAG 2520104 Query 22339 CAACGTCTTATATTTGCCGGCAAACA 22364 || | | || ||||| || ||||| Sbjct 2520103 CAGAGGTTGATCTTTGCTGGGAAACA 2520078 >seq59 Length=15706754 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/205 (70%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || | | || || || || |||||||||| | || ||| Sbjct 4366368 AGATGCAGATCTTTGTGAAGATCCTCACAGGCAAGACCATCACTCTTGAGTTCGAGCCCA 4366309 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || | | | | | ||||| ||||| |||||||||||||| || | ||||| | Sbjct 4366308 GTGACATCATCAAGAACGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCTCCCCCGACC 4366249 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || ||||| | || | |||||| || | ||||| | | ||| ||| || |||| Sbjct 4366248 AGCAGCGTCTGACTGTTACAGGCAAAGAGCTGGAGGACAATCACACTCTCT-AGACTACA 4366190 Query 22397 ACATTCAAAAAGAATCCACCATACA 22421 ||||||| ||||| |||||||| || Sbjct 4366189 ACATTCAGAAAGAGTCCACCATGCA 4366165 >seq175 Length=5584636 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| |||||||| ||||| ||| || || || |||||||||| | ||| || Sbjct 1836296 AAGATGCACATTTTTGTAAAAACCCTAATGGGGAAGACCATCACTCTTGAGGATGAACCC 1836355 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || | ||| || || || || || || || ||| | || ||| Sbjct 1836356 TCAGATACAATAGAAAATGTAAAAGCCAAGATCCAGGATAAAGAAGGAATTTCTCCTGAT 1836415 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||| | || || ||||| |||||| | | || ||| | || | | || ||| Sbjct 1836416 CAACAGAGACTGATCTTTGCTGGCAAAAAACTGGAAGATGGACCTACTTTGTTTGACTAC 1836475 Query 22396 AACATTCAAAAAGAATCCAC 22415 ||||||||||| || || || Sbjct 1836476 AACATTCAAAAGGAGTCTAC 1836495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419695655104495