Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq131 181 2e-40
seq40 161 2e-34
seq24 111 3e-19
seq59 84.2 4e-11
>seq131
Length=8015323
Score = 181 bits (200), Expect = 2e-40
Identities = 177/228 (78%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| | | ||||| |||| ||| |||||||||||||| |||||||| || || ||
Sbjct 2518415 CCTCCCCTCAAGCGCAGGACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2518474
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||||| | |||||| || || || || | || || ||||| || |||
Sbjct 2518475 AGGGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGA 2518534
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||||||||||||||| |||||||||||||| ||| |||||||| | ||||||
Sbjct 2518535 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACT 2518594
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
|| | |||||| || || || || | |||||| ||||| |||||||||
Sbjct 2518595 TCAAGGGTGATTGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATT 2518642
Score = 116 bits (128), Expect = 7e-21
Identities = 114/147 (78%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 68316 TGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATC 68375
|| ||||| || || || | || || ||||| || || ||||||||||||||||| |||
Sbjct 2520078 TGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATC 2520137
Query 68376 TTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCC 68435
|||||||||||| ||| |||||||| | || || || | |||||||||||| |||
Sbjct 2520138 TTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTACCC 2520197
Query 68436 GTGAGGGTCTTGACGAATATCTGCATT 68462
|| | ||| || || || |||||||||
Sbjct 2520198 GTTAAGGTTTTCACAAAGATCTGCATT 2520224
>seq40
Length=19935044
Score = 161 bits (178), Expect = 2e-34
Identities = 160/207 (77%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318
|| || || ||||| || |||||||| || || || || || | |||||||| | ||||
Sbjct 1219241 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 1219182
Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378
|| || || || ||||| || || ||||| || || |||||||| || || || |||||
Sbjct 1219181 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTA 1219122
Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438
||||| ||| |||||||||||| | ||| || |||| ||||||||| ||||||||
Sbjct 1219121 GCCTTTACGTTCTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCCGTT 1219062
Query 68439 AGGGTCTTGACGAATATCTGCATTATG 68465
|||||||| ||||| || |||||| ||
Sbjct 1219061 AGGGTCTTTACGAAAATTTGCATTCTG 1219035
>seq24
Length=24352400
Score = 111 bits (122), Expect = 3e-19
Identities = 143/196 (73%), Gaps = 1/196 (1%)
Strand=Plus/Plus
Query 68267 GGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGC 68326
||||| || ||||||||||| || ||||| || | ||||| || | ||| || || ||
Sbjct 13198980 GGACTGCTTCTGGATGTTATACTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGC 13199039
Query 68327 GAATATGAGTCTTTGTTGGTCGGGTG-GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGA 68385
| || || || ||||| || | | ||||| |||||||| || || || || ||||
Sbjct 13199040 ACAAATCAGATGCTGCTGGTCAGGGGAGGATGCCCTCCTTGTCCTGGATTTTGGCTTTGA 13199099
Query 68386 CGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCT 68445
|| |||||||||||| | || || || ||||||||||| || ||| | |||||||
Sbjct 13199100 CGTTCTCGATGGTGTCACTGGGCTCAACCTCGAAGGTGATGGTCTTGCCCATCAGGGTCT 13199159
Query 68446 TGACGAATATCTGCAT 68461
| | ||| || |||||
Sbjct 13199160 TCATGAAGATTTGCAT 13199175
>seq59
Length=15706754
Score = 84.2 bits (92), Expect = 4e-11
Identities = 146/210 (70%), Gaps = 3/210 (1%)
Strand=Plus/Plus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCG-GAGAGTGTCCTCCCATCTTC 68311
|||| ||| | ||||||||||| || ||||| || || |||||||| | || ||
Sbjct 4366159 ACCAGGTGCATGGTGGACTCTTTCTGAATGTTGTAGTCTAGAGAGTGTGATTG--TCCTC 4366216
Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371
| || || || | | | || | || |||||||| | ||||| |||||||||||
Sbjct 4366217 CAGCTCTTTGCCTGTAACAGTCAGACGCTGCTGGTCGGGGGAGATGCCCTCCTTGTCTTG 4366276
Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431
|| || || |||||| || |||| |||| | || | || | |||||||| ||
Sbjct 4366277 GATTTTGGCTTTGACGTTCTTGATGATGTCACTGGGCTCGAACTCAAGAGTGATGGTCTT 4366336
Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| |||||| |||| || || ||||||||
Sbjct 4366337 GCCTGTGAGGATCTTCACAAAGATCTGCAT 4366366
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921549557269560
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