Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq131 181 2e-40 seq40 161 2e-34 seq24 111 3e-19 seq59 84.2 4e-11 >seq131 Length=8015323 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | | ||||| |||| ||| |||||||||||||| |||||||| || || || Sbjct 2518415 CCTCCCCTCAAGCGCAGGACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2518474 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || || || || | || || ||||| || ||| Sbjct 2518475 AGGGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGA 2518534 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||||||||||||||| |||||||||||||| ||| |||||||| | |||||| Sbjct 2518535 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACT 2518594 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | |||||| || || || || | |||||| ||||| ||||||||| Sbjct 2518595 TCAAGGGTGATTGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATT 2518642 Score = 116 bits (128), Expect = 7e-21 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 68316 TGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATC 68375 || ||||| || || || | || || ||||| || || ||||||||||||||||| ||| Sbjct 2520078 TGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATC 2520137 Query 68376 TTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCC 68435 |||||||||||| ||| |||||||| | || || || | |||||||||||| ||| Sbjct 2520138 TTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTTTTACCC 2520197 Query 68436 GTGAGGGTCTTGACGAATATCTGCATT 68462 || | ||| || || || ||||||||| Sbjct 2520198 GTTAAGGTTTTCACAAAGATCTGCATT 2520224 >seq40 Length=19935044 Score = 161 bits (178), Expect = 2e-34 Identities = 160/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || || ||||| || |||||||| || || || || || | |||||||| | |||| Sbjct 1219241 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 1219182 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || || ||||| || || ||||| || || |||||||| || || || ||||| Sbjct 1219181 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTA 1219122 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 ||||| ||| |||||||||||| | ||| || |||| ||||||||| |||||||| Sbjct 1219121 GCCTTTACGTTCTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCCGTT 1219062 Query 68439 AGGGTCTTGACGAATATCTGCATTATG 68465 |||||||| ||||| || |||||| || Sbjct 1219061 AGGGTCTTTACGAAAATTTGCATTCTG 1219035 >seq24 Length=24352400 Score = 111 bits (122), Expect = 3e-19 Identities = 143/196 (73%), Gaps = 1/196 (1%) Strand=Plus/Plus Query 68267 GGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGC 68326 ||||| || ||||||||||| || ||||| || | ||||| || | ||| || || || Sbjct 13198980 GGACTGCTTCTGGATGTTATACTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGC 13199039 Query 68327 GAATATGAGTCTTTGTTGGTCGGGTG-GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGA 68385 | || || || ||||| || | | ||||| |||||||| || || || || |||| Sbjct 13199040 ACAAATCAGATGCTGCTGGTCAGGGGAGGATGCCCTCCTTGTCCTGGATTTTGGCTTTGA 13199099 Query 68386 CGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCT 68445 || |||||||||||| | || || || ||||||||||| || ||| | ||||||| Sbjct 13199100 CGTTCTCGATGGTGTCACTGGGCTCAACCTCGAAGGTGATGGTCTTGCCCATCAGGGTCT 13199159 Query 68446 TGACGAATATCTGCAT 68461 | | ||| || ||||| Sbjct 13199160 TCATGAAGATTTGCAT 13199175 >seq59 Length=15706754 Score = 84.2 bits (92), Expect = 4e-11 Identities = 146/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCG-GAGAGTGTCCTCCCATCTTC 68311 |||| ||| | ||||||||||| || ||||| || || |||||||| | || || Sbjct 4366159 ACCAGGTGCATGGTGGACTCTTTCTGAATGTTGTAGTCTAGAGAGTGTGATTG--TCCTC 4366216 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 | || || || | | | || | || |||||||| | ||||| ||||||||||| Sbjct 4366217 CAGCTCTTTGCCTGTAACAGTCAGACGCTGCTGGTCGGGGGAGATGCCCTCCTTGTCTTG 4366276 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 || || || |||||| || |||| |||| | || | || | |||||||| || Sbjct 4366277 GATTTTGGCTTTGACGTTCTTGATGATGTCACTGGGCTCGAACTCAAGAGTGATGGTCTT 4366336 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||||| |||| || || |||||||| Sbjct 4366337 GCCTGTGAGGATCTTCACAAAGATCTGCAT 4366366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921549557269560