Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq175 116 3e-21
seq131 96.9 3e-15
seq40 89.7 4e-13
>seq175
Length=5584636
Score = 116 bits (128), Expect = 3e-21
Identities = 163/229 (71%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 114154 TACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGC 114213
|||||| ||| |||||| | || | ||| | ||||| || |||||||||||||| ||
Sbjct 1836527 TACCGCTACGAAGTCTCTACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAA 1836468
Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273
|| |||| | |||||| |||| ||| ||||| |||| || | |||||| || ||||
Sbjct 1836467 ACAAAGTAGGTCCATCTTCCAGTTTTTTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAG 1836408
Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGA 114333
||| |||||||| || ||||| ||||| | ||| | || || | || |||
Sbjct 1836407 AAATTCCTTCTTTATCCTGGATCTTGGCTTTTACATTTTCTATTGTATCTGAGGGTTCAT 1836348
Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
| || | || | || || || | || |||||||||||||| |||||
Sbjct 1836347 CCTCAAGAGTGATGGTCTTCCCCATTAGGGTTTTTACAAAAATGTGCAT 1836299
>seq131
Length=8015323
Score = 96.9 bits (106), Expect = 3e-15
Identities = 140/198 (71%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244
||| || ||||| || |||||||| || || ||||| |||||| || || || ||
Sbjct 2518444 CGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGTCCATCTTCCAGCTGCTTGCC 2518503
Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304
||| |||| | | ||| ||||| |||||||||||||| ||||| |||||| ||
Sbjct 2518504 AGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGGATCTTTGCCTT 2518563
Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364
| | |||| |||||| ||| || || || | ||| | || || ||||||| ||
Sbjct 2518564 GACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATTGTCTTACCGGTCAAGGT 2518623
Query 114365 TTTTACAAAAATCTGCAT 114382
|| || || ||||||||
Sbjct 2518624 CTTCACGAAGATCTGCAT 2518641
>seq40
Length=19935044
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
|| || || || || |||||||| || | ||| || |||||| || || || ||
Sbjct 1219235 GTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 1219176
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| ||||||| | ||| ||||| ||||| ||||||||||| || ||||| |||
Sbjct 1219175 GCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTAGCCTTT 1219116
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | || | |||||| ||| ||| || |||| ||| | || || || || || ||
Sbjct 1219115 ACGTTCTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCCGTTAGGGTC 1219056
Query 114366 TTTACAAAAATCTGCAT 114382
||||| ||||| |||||
Sbjct 1219055 TTTACGAAAATTTGCAT 1219039
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420102023786676
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |