Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq87 93.3 8e-14
seq9 87.8 3e-12
>seq87
Length=11743621
Score = 93.3 bits (102), Expect = 8e-14
Identities = 232/350 (66%), Gaps = 7/350 (2%)
Strand=Plus/Minus
Query 42508 GCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAAC 42567
|||| |||| |||||||| || || || || ||| | || ||||| ||||| || |
Sbjct 8842789 GCTGTCTCTATGGCTTCCAAATTGCAATGGAAAACATACATTCTGAAATGTAC---AATC 8842733
Query 42568 TGCTCA---ACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGG 42624
| || | |||| ||||| ||| || || | | || ||||| ||||| |
Sbjct 8842732 TCCTTACTGACACTTACATTAAAGATTCCAAGGAAAGGGAGTTTCTCTTCAATGCCATTG 8842673
Query 42625 AGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCG 42684
| || ||||| || | ||||||||||| || ||||| | | ||||||| | |
Sbjct 8842672 A-ACAATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGCATTGGATCGGGGAAAAAG 8842614
Query 42685 ACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGG 42744
| || || | || || | ||||||||| || | | || || |||||||| || |
Sbjct 8842613 AAGCTACCTATGGTAAGTGTGATGTAGCCTTTGCCCCAATAGAAGGAATCTTCTTTTCTG 8842554
Query 42745 GCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCT 42804
| | || || ||||| ||||| |||||| | | | ||||| || ||||| | |
Sbjct 8842553 GTTCTTTTGCATCCATATTCTGACTCAAGAAACGAGGATTAATGCCTGGCCTCACATGTT 8842494
Query 42805 CGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGC 42854
| || ||| |||| ||||| || ||| | | || | |||||| |||||
Sbjct 8842493 CCAATGAATTCATTAGCAGAGATGAGAGTTTACACTGTGACTTTACCTGC 8842444
>seq9
Length=34412642
Score = 87.8 bits (96), Expect = 3e-12
Identities = 102/135 (76%), Gaps = 2/135 (1%)
Strand=Plus/Plus
Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755
|| || ||| ||||||||||| | || || || || || |||||||| || | || ||
Sbjct 15801699 GGGGAAAGGGTGGTAGCCTTTGCTGCTGTAGAAGGGATTTTCTTCTCCGGATCTTTTGCT 15801758
Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814
| || |||||||| ||| ||| |||| | ||||| ||||| || || || || |||||
Sbjct 15801759 GCTATATTCTGGCTAAAGAAGAGAGGTCT-TATGCCTGGACTTACTTTTTCCAATGAACT 15801817
Query 42815 CATCAGCAGGGACGA 42829
||||||||| || ||
Sbjct 15801818 CATCAGCAGAGATGA 15801832
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944264561790480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |