Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq87 93.3 8e-14 seq9 87.8 3e-12 >seq87 Length=11743621 Score = 93.3 bits (102), Expect = 8e-14 Identities = 232/350 (66%), Gaps = 7/350 (2%) Strand=Plus/Minus Query 42508 GCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAAC 42567 |||| |||| |||||||| || || || || ||| | || ||||| ||||| || | Sbjct 8842789 GCTGTCTCTATGGCTTCCAAATTGCAATGGAAAACATACATTCTGAAATGTAC---AATC 8842733 Query 42568 TGCTCA---ACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGG 42624 | || | |||| ||||| ||| || || | | || ||||| ||||| | Sbjct 8842732 TCCTTACTGACACTTACATTAAAGATTCCAAGGAAAGGGAGTTTCTCTTCAATGCCATTG 8842673 Query 42625 AGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCG 42684 | || ||||| || | ||||||||||| || ||||| | | ||||||| | | Sbjct 8842672 A-ACAATGCCTTGTGTAAAGAAGAAGGCAGATTGGGCCTTGCATTGGATCGGGGAAAAAG 8842614 Query 42685 ACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGG 42744 | || || | || || | ||||||||| || | | || || |||||||| || | Sbjct 8842613 AAGCTACCTATGGTAAGTGTGATGTAGCCTTTGCCCCAATAGAAGGAATCTTCTTTTCTG 8842554 Query 42745 GCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCT 42804 | | || || ||||| ||||| |||||| | | | ||||| || ||||| | | Sbjct 8842553 GTTCTTTTGCATCCATATTCTGACTCAAGAAACGAGGATTAATGCCTGGCCTCACATGTT 8842494 Query 42805 CGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGC 42854 | || ||| |||| ||||| || ||| | | || | |||||| ||||| Sbjct 8842493 CCAATGAATTCATTAGCAGAGATGAGAGTTTACACTGTGACTTTACCTGC 8842444 >seq9 Length=34412642 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || || ||| ||||||||||| | || || || || || |||||||| || | || || Sbjct 15801699 GGGGAAAGGGTGGTAGCCTTTGCTGCTGTAGAAGGGATTTTCTTCTCCGGATCTTTTGCT 15801758 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 | || |||||||| ||| ||| |||| | ||||| ||||| || || || || ||||| Sbjct 15801759 GCTATATTCTGGCTAAAGAAGAGAGGTCT-TATGCCTGGACTTACTTTTTCCAATGAACT 15801817 Query 42815 CATCAGCAGGGACGA 42829 ||||||||| || || Sbjct 15801818 CATCAGCAGAGATGA 15801832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944264561790480