Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_009333.1
Length=137969
Score E
Sequences producing significant alignments: (Bits) Value
seq4 96.9 3e-15
>seq4
Length=36583390
Score = 96.9 bits (106), Expect = 3e-15
Identities = 356/552 (64%), Gaps = 7/552 (1%)
Strand=Plus/Minus
Query 20271 GGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACA 20330
||| ||||||||||||| | ||||| || |||| ||||||| ||| |||||||| ||||
Sbjct 19718186 GGGCATAGCTGGCAATGGTGAAAGGTACCCCCAGGCCCATGTATCCTGACCTCTGCTACA 19718127
Query 20331 GCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAA 20390
|||| |||| ||||||| || | ||| | || || || | || ||||| | |
Sbjct 19718126 GCTGGCAGGTCAGCTCACTGTTCACCACAGAGAACTGGCAAAGGGCATGGCAGGGAGTTA 19718067
Query 20391 GCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCG 20450
||||| || | | | | || ||| | || ||||| ||||||||||| | || |
Sbjct 19718066 GCGCCGTCTGAGGAAGGCCTTGTGGATTCTAAGCGCACATGATGATTCTTCTGT-GTCAG 19718008
Query 20451 GATTATTTTTTATTAAATCCACAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGT 20510
| || |||| ||| || || | || ||||| | || || ||| | |
Sbjct 19718007 GGTTGGTTTTGATTGTGTCAGTAACCTTTTGCAGCTGGTCTACTCCTTGACCTACACCAT 19717948
Query 20511 CAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTC 20570
| | || | || || | ||| |||| ||||||||||| || || ||||| || |
Sbjct 19717947 CTGAATTCAGATCTTTATATTCTGCCTCAAAATGCCTCCACTGAAAGCCATAAACTGGGC 19717888
Query 20571 CCAAATCCCCCTCCCTTCTGTGCGCCAG--GCCGCGCCCGGCCAGGAACTCCCTGGAGCC 20628
| |||| || | ||||| | || || | | | ||| || || | ||| ||
Sbjct 19717887 CTGAATCTCCTT--CTTCTCAGGTGAAGAATCCCAGGCTGTCCAAAAAGTCTCGGGACCC 19717830
Query 20629 ATTTTTGTCCCATATCTTGACTCCTGTTCTTGAAAGCTCCCTGGAGTCAGTACTCCCCTT 20688
| | ||||| ||||| ||||| | || || || || | | || ||||
Sbjct 19717829 ACTGGCATCCCAGATCTTCACTCCCTTGGAAGACAGTTCTCTAGCATTGGT-GGATCCTT 19717771
Query 20689 CAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCCAAAACACCCGCTTTGTGGTTAGTAA 20748
| | ||| |||| ||||| ||| || ||| | |||||| ||||| || || || |
Sbjct 19717770 GATACGCCACAGCAACTCTTCCACAACACCT-GTGCAAACACACGCTTGGTTGTCAGCAG 19717712
Query 20749 GGGAAAGTGGTCCCGCAGACTATACCTGGCCTGCATGCCAAATAGAGAGAGGGTGCCTAT 20808
||||| | || | ||| | || |||||||||||||| | | ||||| || |
Sbjct 19717711 AGGAAACTCATCTCTCAGGTTGTAGTGTGCCTGCATGCCAAACATGGGCAGGGTACCGGT 19717652
Query 20809 GCCGGTGCGGTC 20820
||| ||| |||
Sbjct 19717651 GCCCATGCAGTC 19717640
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 441337914997320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |