Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq4 96.9 3e-15 >seq4 Length=36583390 Score = 96.9 bits (106), Expect = 3e-15 Identities = 356/552 (64%), Gaps = 7/552 (1%) Strand=Plus/Minus Query 20271 GGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACA 20330 ||| ||||||||||||| | ||||| || |||| ||||||| ||| |||||||| |||| Sbjct 19718186 GGGCATAGCTGGCAATGGTGAAAGGTACCCCCAGGCCCATGTATCCTGACCTCTGCTACA 19718127 Query 20331 GCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAA 20390 |||| |||| ||||||| || | ||| | || || || | || ||||| | | Sbjct 19718126 GCTGGCAGGTCAGCTCACTGTTCACCACAGAGAACTGGCAAAGGGCATGGCAGGGAGTTA 19718067 Query 20391 GCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATAATGATTCTTCTATCGTGCG 20450 ||||| || | | | | || ||| | || ||||| ||||||||||| | || | Sbjct 19718066 GCGCCGTCTGAGGAAGGCCTTGTGGATTCTAAGCGCACATGATGATTCTTCTGT-GTCAG 19718008 Query 20451 GATTATTTTTTATTAAATCCACAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGT 20510 | || |||| ||| || || | || ||||| | || || ||| | | Sbjct 19718007 GGTTGGTTTTGATTGTGTCAGTAACCTTTTGCAGCTGGTCTACTCCTTGACCTACACCAT 19717948 Query 20511 CAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTC 20570 | | || | || || | ||| |||| ||||||||||| || || ||||| || | Sbjct 19717947 CTGAATTCAGATCTTTATATTCTGCCTCAAAATGCCTCCACTGAAAGCCATAAACTGGGC 19717888 Query 20571 CCAAATCCCCCTCCCTTCTGTGCGCCAG--GCCGCGCCCGGCCAGGAACTCCCTGGAGCC 20628 | |||| || | ||||| | || || | | | ||| || || | ||| || Sbjct 19717887 CTGAATCTCCTT--CTTCTCAGGTGAAGAATCCCAGGCTGTCCAAAAAGTCTCGGGACCC 19717830 Query 20629 ATTTTTGTCCCATATCTTGACTCCTGTTCTTGAAAGCTCCCTGGAGTCAGTACTCCCCTT 20688 | | ||||| ||||| ||||| | || || || || | | || |||| Sbjct 19717829 ACTGGCATCCCAGATCTTCACTCCCTTGGAAGACAGTTCTCTAGCATTGGT-GGATCCTT 19717771 Query 20689 CAGAAACCAAAGCAGCTCTTGCACTACGCCTCGCCAAAACACCCGCTTTGTGGTTAGTAA 20748 | | ||| |||| ||||| ||| || ||| | |||||| ||||| || || || | Sbjct 19717770 GATACGCCACAGCAACTCTTCCACAACACCT-GTGCAAACACACGCTTGGTTGTCAGCAG 19717712 Query 20749 GGGAAAGTGGTCCCGCAGACTATACCTGGCCTGCATGCCAAATAGAGAGAGGGTGCCTAT 20808 ||||| | || | ||| | || |||||||||||||| | | ||||| || | Sbjct 19717711 AGGAAACTCATCTCTCAGGTTGTAGTGTGCCTGCATGCCAAACATGGGCAGGGTACCGGT 19717652 Query 20809 GCCGGTGCGGTC 20820 ||| ||| ||| Sbjct 19717651 GCCCATGCAGTC 19717640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441337914997320