Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq40 118 3e-21
seq175 102 2e-16
seq24 98.7 2e-15
seq209 91.5 3e-13
seq113 84.2 5e-11
>seq40
Length=19935044
Score = 118 bits (130), Expect = 3e-21
Identities = 143/195 (73%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||| | || ||||| || ||||| | || || ||||| |||
Sbjct 1219229 TCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 1219170
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| || | ||| || | ||||| ||||||||||||||||| || || || |||||
Sbjct 1219169 ATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTAGCCTTTACGTTC 1219110
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || || | ||| || || || ||||| ||||| || || || ||||| |||
Sbjct 1219109 TCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCCGTTAGGGTCTTTACG 1219050
Query 288463 AATATCTGCATTATG 288477
|| || |||||| ||
Sbjct 1219049 AAAATTTGCATTCTG 1219035
Score = 95.1 bits (104), Expect = 3e-14
Identities = 123/170 (72%), Gaps = 0/170 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| | || | ||| || ||||| | || ||||| |||||||| ||||| |
Sbjct 1219697 CCACCCCTCAGACGAAGGACAAGATGCAGAGTTGACTCTTTCTGGATATTGTAGTCAGAA 1219638
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || ||||| | || || ||||| ||||| || | ||| || | |||
Sbjct 1219637 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 1219578
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCT 288416
|| ||||||||||||||||| || || |||||||| || || | ||| ||
Sbjct 1219577 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCACT 1219528
>seq175
Length=5584636
Score = 102 bits (112), Expect = 2e-16
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 288265 ACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCT 288324
|| ||||||| || || ||||| || || ||||| | || |||| |||||
Sbjct 1836507 ACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAAACAAAGTAGGTCCATCTTCC 1836448
Query 288325 AATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGG 288384
| || ||| || || |||||||| | ||||||| | | ||||||||||||||||||
Sbjct 1836447 AGTTTTTTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAGAAATTCCTTCTTTATCCTGG 1836388
Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTC 288444
|| || ||||| || |||||||| | ||| | ||| | || || ||||| ||||||
Sbjct 1836387 ATCTTGGCTTTTACATTTTCTATTGTATCTGAGGGTTCATCCTCAAGAGTGATGGTCTTC 1836328
Query 288445 CCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| | || || || || || || |||||
Sbjct 1836327 CCCATTAGGGTTTTTACAAAAATGTGCAT 1836299
>seq24
Length=24352400
Score = 98.7 bits (108), Expect = 2e-15
Identities = 136/189 (72%), Gaps = 1/189 (1%)
Strand=Plus/Plus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|| ||||| ||||| || | ||| ||||| || || || | ||||| ||||| | |||
Sbjct 13198987 TTCTGGATGTTATACTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCACAAATC 13199046
Query 288346 AGACGCTGTTGAGAATCTG-GGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTC 288404
||| |||| || | | |||| || || || ||||||||||| ||||| ||||| ||
Sbjct 13199047 AGATGCTGCTGGTCAGGGGAGGATGCCCTCCTTGTCCTGGATTTTGGCTTTGACGTTCTC 13199106
Query 288405 TATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464
|| | || || | || || |||| ||||| ||||| || |||| ||||| | |||
Sbjct 13199107 GATGGTGTCACTGGGCTCAACCTCGAAGGTGATGGTCTTGCCCATCAGGGTCTTCATGAA 13199166
Query 288465 TATCTGCAT 288473
|| |||||
Sbjct 13199167 GATTTGCAT 13199175
>seq209
Length=4208363
Score = 91.5 bits (100), Expect = 3e-13
Identities = 135/189 (71%), Gaps = 3/189 (2%)
Strand=Plus/Plus
Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348
||||| || ||||| | || |||| || ||||| | || || ||||| ||||| ||
Sbjct 4009478 TGGATGTTGTAGTCAGAAAG--TGCGACCATCTTC-AGGTGCTTGCCTGCAAAGATGAGC 4009534
Query 288349 CGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408
| ||| || | ||||| |||||||||||||||| || || || | ||| || ||
Sbjct 4009535 CTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGAGCTTAGCCTTTATGTTCTCAATG 4009594
Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468
| || || | ||| || || || ||||| ||||| || ||||| |||| | ||| ||
Sbjct 4009595 GTGTCCCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGATCTTTATGAAGATT 4009654
Query 288469 TGCATTATG 288477
|||||| ||
Sbjct 4009655 TGCATTTTG 4009663
>seq113
Length=9683949
Score = 84.2 bits (92), Expect = 5e-11
Identities = 132/187 (71%), Gaps = 4/187 (2%)
Strand=Plus/Plus
Query 288292 ATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGC 288351
|| || ||||| | | || ||||| ||||| | ||||| | || |||||||| | |
Sbjct 8523926 ATGTTGTAGTCAGACAAGGTACGTCCATCTTCCAGTTGTTAGTCAGCAAAGATCAGTCTC 8523985
Query 288352 TGTTG-AGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGA 288410
|| || || | || |||||||| ||||||||||| || || || || ||| |||| |
Sbjct 8523986 TGCTGGAGGA---GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTCCTATTGT 8524042
Query 288411 ATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTG 288470
||| ||| || | ||| ||||| |||||| | | || || || | ||| |||||
Sbjct 8524043 ATCCAAGTGTTCAACCTTGAGAGTGATGGTCTTCTCCATTAGGGTATTTATGAAAATCTG 8524102
Query 288471 CATTATG 288477
|||| ||
Sbjct 8524103 CATTTTG 8524109
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179558832141994
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |