Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq40 118 3e-21 seq175 102 2e-16 seq24 98.7 2e-15 seq209 91.5 3e-13 seq113 84.2 5e-11 >seq40 Length=19935044 Score = 118 bits (130), Expect = 3e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| || ||||| | || || ||||| ||| Sbjct 1219229 TCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 1219170 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | ||||| ||||||||||||||||| || || || ||||| Sbjct 1219169 ATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTAGCCTTTACGTTC 1219110 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | ||| || || || ||||| ||||| || || || ||||| ||| Sbjct 1219109 TCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCCGTTAGGGTCTTTACG 1219050 Query 288463 AATATCTGCATTATG 288477 || || |||||| || Sbjct 1219049 AAAATTTGCATTCTG 1219035 Score = 95.1 bits (104), Expect = 3e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | || | ||| || ||||| | || ||||| |||||||| ||||| | Sbjct 1219697 CCACCCCTCAGACGAAGGACAAGATGCAGAGTTGACTCTTTCTGGATATTGTAGTCAGAA 1219638 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | || || ||||| ||||| || | ||| || | ||| Sbjct 1219637 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 1219578 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCT 288416 || ||||||||||||||||| || || |||||||| || || | ||| || Sbjct 1219577 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCACT 1219528 >seq175 Length=5584636 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 288265 ACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCT 288324 || ||||||| || || ||||| || || ||||| | || |||| ||||| Sbjct 1836507 ACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAAACAAAGTAGGTCCATCTTCC 1836448 Query 288325 AATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGG 288384 | || ||| || || |||||||| | ||||||| | | |||||||||||||||||| Sbjct 1836447 AGTTTTTTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAGAAATTCCTTCTTTATCCTGG 1836388 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTC 288444 || || ||||| || |||||||| | ||| | ||| | || || ||||| |||||| Sbjct 1836387 ATCTTGGCTTTTACATTTTCTATTGTATCTGAGGGTTCATCCTCAAGAGTGATGGTCTTC 1836328 Query 288445 CCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | || || || || || || ||||| Sbjct 1836327 CCCATTAGGGTTTTTACAAAAATGTGCAT 1836299 >seq24 Length=24352400 Score = 98.7 bits (108), Expect = 2e-15 Identities = 136/189 (72%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| ||||| || | ||| ||||| || || || | ||||| ||||| | ||| Sbjct 13198987 TTCTGGATGTTATACTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCACAAATC 13199046 Query 288346 AGACGCTGTTGAGAATCTG-GGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTC 288404 ||| |||| || | | |||| || || || ||||||||||| ||||| ||||| || Sbjct 13199047 AGATGCTGCTGGTCAGGGGAGGATGCCCTCCTTGTCCTGGATTTTGGCTTTGACGTTCTC 13199106 Query 288405 TATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | || || | || || |||| ||||| ||||| || |||| ||||| | ||| Sbjct 13199107 GATGGTGTCACTGGGCTCAACCTCGAAGGTGATGGTCTTGCCCATCAGGGTCTTCATGAA 13199166 Query 288465 TATCTGCAT 288473 || ||||| Sbjct 13199167 GATTTGCAT 13199175 >seq209 Length=4208363 Score = 91.5 bits (100), Expect = 3e-13 Identities = 135/189 (71%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 288289 TGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGA 288348 ||||| || ||||| | || |||| || ||||| | || || ||||| ||||| || Sbjct 4009478 TGGATGTTGTAGTCAGAAAG--TGCGACCATCTTC-AGGTGCTTGCCTGCAAAGATGAGC 4009534 Query 288349 CGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408 | ||| || | ||||| |||||||||||||||| || || || | ||| || || Sbjct 4009535 CTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGAGCTTAGCCTTTATGTTCTCAATG 4009594 Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468 | || || | ||| || || || ||||| ||||| || ||||| |||| | ||| || Sbjct 4009595 GTGTCCCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGATCTTTATGAAGATT 4009654 Query 288469 TGCATTATG 288477 |||||| || Sbjct 4009655 TGCATTTTG 4009663 >seq113 Length=9683949 Score = 84.2 bits (92), Expect = 5e-11 Identities = 132/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 288292 ATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGC 288351 || || ||||| | | || ||||| ||||| | ||||| | || |||||||| | | Sbjct 8523926 ATGTTGTAGTCAGACAAGGTACGTCCATCTTCCAGTTGTTAGTCAGCAAAGATCAGTCTC 8523985 Query 288352 TGTTG-AGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGA 288410 || || || | || |||||||| ||||||||||| || || || || ||| |||| | Sbjct 8523986 TGCTGGAGGA---GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTCCTATTGT 8524042 Query 288411 ATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTG 288470 ||| ||| || | ||| ||||| |||||| | | || || || | ||| ||||| Sbjct 8524043 ATCCAAGTGTTCAACCTTGAGAGTGATGGTCTTCTCCATTAGGGTATTTATGAAAATCTG 8524102 Query 288471 CATTATG 288477 |||| || Sbjct 8524103 CATTTTG 8524109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179558832141994