Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq131 134 1e-26 seq40 132 5e-26 seq209 98.7 1e-15 seq175 87.8 2e-12 >seq131 Length=8015323 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | ||| | || || || || | ||| || ||||| || |||||||| || | Sbjct 2518414 ACCTCCCCTCAAGCGCAGGACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCAGA 2518473 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || | ||||| ||||||||||| ||| | || | || ||||||||| ||||| Sbjct 2518474 CAGGGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGAGG 2518533 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || ||||| || ||| ||| ||| ||| | || |||| || || || Sbjct 2518534 AATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTAC 2518593 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| | || | ||||| |||||||| || || ||||| || |||||| Sbjct 2518594 TTCAAGGGTGATTGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATT 2518642 >seq40 Length=19935044 Score = 132 bits (146), Expect = 5e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || | | ||||| | ||||| ||||||||||| Sbjct 1219235 GTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 1219176 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||| ||||| || |||||||| || || || || |||| Sbjct 1219175 GCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTAGCCTTT 1219116 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || |||| || ||||| || | || | |||||| || || | || Sbjct 1219115 ACGTTCTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCCGTTAGGGTC 1219056 Query 64427 TTTACGAAAATTTGCATT 64444 |||||||||||||||||| Sbjct 1219055 TTTACGAAAATTTGCATT 1219038 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || || ||||| || || ||||| || | | ||||| | || Sbjct 1219683 AAGGACAAGATGCAGAGTTGACTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATC 1219624 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| ||||||||||| ||| | ||||||| ||||||||| ||||| || |||||||| || Sbjct 1219623 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATC 1219564 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCAC 64385 || || || ||| || ||| | ||||||| Sbjct 1219563 CTGGATCTTGGCCTTCACGTTCTCGATGGTATCAC 1219529 >seq209 Length=4208363 Score = 98.7 bits (108), Expect = 1e-15 Identities = 136/188 (72%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 64259 TGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGC 64318 || |||||||| || | | ||||| | |||||| | |||||||| ||| | |||||| Sbjct 4009478 TGGATGTTGTAGTCAGAAA--GTGCGACCATCTTCAGG-TGCTTGCCTGCAAAGATGAGC 4009534 Query 64319 CGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACT 64378 | ||||||||| ||||| || |||||||| || || | || ||||| ||| | Sbjct 4009535 CTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGAGCTTAGCCTTTATGTTCTCAATG 4009594 Query 64379 GTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATT 64438 || || | || ||||| || | || | ||||||||| |||| | |||| ||| ||| Sbjct 4009595 GTGTCCCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGATCTTTATGAAGATT 4009654 Query 64439 TGCATTTT 64446 |||||||| Sbjct 4009655 TGCATTTT 4009662 >seq175 Length=5584636 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||||| || | ||| ||| ||||||| || || || |||||||||||||| || Sbjct 1836526 ACCGCTACGAAGTCTCTACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAAA 1836467 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || | | ||||| || | ||||| ||| | || || | ||| || || |||| Sbjct 1836466 CAAAGTAGGTCCATCTTCCAGTTTTTTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAGA 1836407 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||||||||| || || || || |||||| || | |||||| || || | Sbjct 1836406 AATTCCTTCTTTATCCTGGATCTTGGCTTTTACATTTTCTATTGTATCTGAGGGTTCATC 1836347 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | ||| | |||||| || | | |||||||| ||||| ||||| || Sbjct 1836346 CTCAAGAGTGATGGTCTTCCCCATTAGGGTTTTTACAAAAATGTGCATCTT 1836296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499605309324120