Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq131 134 1e-26
seq40 132 5e-26
seq209 98.7 1e-15
seq175 87.8 2e-12
>seq131
Length=8015323
Score = 134 bits (148), Expect = 1e-26
Identities = 167/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || | ||| | || || || || | ||| || ||||| || |||||||| || |
Sbjct 2518414 ACCTCCCCTCAAGCGCAGGACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCAGA 2518473
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| ||| || | ||||| ||||||||||| ||| | || | || ||||||||| |||||
Sbjct 2518474 CAGGGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGAGG 2518533
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
||| ||||| || ||||| || ||| ||| ||| ||| | || |||| || || ||
Sbjct 2518534 AATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTAC 2518593
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
||| | || | ||||| |||||||| || || ||||| || ||||||
Sbjct 2518594 TTCAAGGGTGATTGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATT 2518642
>seq40
Length=19935044
Score = 132 bits (146), Expect = 5e-26
Identities = 148/198 (75%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
||||| || || || |||||||| || | | ||||| | ||||| |||||||||||
Sbjct 1219235 GTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 1219176
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
||| | ||||||| ||||||||| ||||| || |||||||| || || || || ||||
Sbjct 1219175 GCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTAGCCTTT 1219116
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
|| ||| | || |||| || ||||| || | || | |||||| || || | ||
Sbjct 1219115 ACGTTCTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCCGTTAGGGTC 1219056
Query 64427 TTTACGAAAATTTGCATT 64444
||||||||||||||||||
Sbjct 1219055 TTTACGAAAATTTGCATT 1219038
Score = 95.1 bits (104), Expect = 1e-14
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
||| || ||||| | || || ||||| || || ||||| || | | ||||| | ||
Sbjct 1219683 AAGGACAAGATGCAGAGTTGACTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATC 1219624
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
||| ||||||||||| ||| | ||||||| ||||||||| ||||| || |||||||| ||
Sbjct 1219623 TTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATC 1219564
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCAC 64385
|| || || ||| || ||| | |||||||
Sbjct 1219563 CTGGATCTTGGCCTTCACGTTCTCGATGGTATCAC 1219529
>seq209
Length=4208363
Score = 98.7 bits (108), Expect = 1e-15
Identities = 136/188 (72%), Gaps = 3/188 (2%)
Strand=Plus/Plus
Query 64259 TGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGC 64318
|| |||||||| || | | ||||| | |||||| | |||||||| ||| | ||||||
Sbjct 4009478 TGGATGTTGTAGTCAGAAA--GTGCGACCATCTTCAGG-TGCTTGCCTGCAAAGATGAGC 4009534
Query 64319 CGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACT 64378
| ||||||||| ||||| || |||||||| || || | || ||||| ||| |
Sbjct 4009535 CTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGAGCTTAGCCTTTATGTTCTCAATG 4009594
Query 64379 GTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATT 64438
|| || | || ||||| || | || | ||||||||| |||| | |||| ||| |||
Sbjct 4009595 GTGTCCCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGATCTTTATGAAGATT 4009654
Query 64439 TGCATTTT 64446
||||||||
Sbjct 4009655 TGCATTTT 4009662
>seq175
Length=5584636
Score = 87.8 bits (96), Expect = 2e-12
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||||| || | ||| ||| ||||||| || || || |||||||||||||| ||
Sbjct 1836526 ACCGCTACGAAGTCTCTACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAAA 1836467
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| || | | ||||| || | ||||| ||| | || || | ||| || || ||||
Sbjct 1836466 CAAAGTAGGTCCATCTTCCAGTTTTTTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAGA 1836407
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
|||||||||||| || || || || |||||| || | |||||| || || |
Sbjct 1836406 AATTCCTTCTTTATCCTGGATCTTGGCTTTTACATTTTCTATTGTATCTGAGGGTTCATC 1836347
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
|| | ||| | |||||| || | | |||||||| ||||| ||||| ||
Sbjct 1836346 CTCAAGAGTGATGGTCTTCCCCATTAGGGTTTTTACAAAAATGTGCATCTT 1836296
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499605309324120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |