Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq21 168 1e-36 seq38 131 2e-25 >seq21 Length=24716270 Score = 168 bits (186), Expect = 1e-36 Identities = 218/301 (72%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934 ||| | |||||| | | ||||| ||||||||||| || ||||| ||||| || | Sbjct 24230309 AACACTGAACGCAGTATAGGGACAGCCCTTCACATTACTGCAGATGAGAGACTGGATTGA 24230368 Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994 || || || | ||||| |||||||| || || || |||||||| || |||||||| Sbjct 24230369 GGCTGTGTTGATGATGTTAAAACCTACTTCTCCACCAAAGGTGCTAGGCTTCCAGTAGTG 24230428 Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054 || || || || || ||||||| ||||||||||| || || || || || || | Sbjct 24230429 AGGAGAACATATAGGATTACCCATGAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTAC 24230488 Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAG 9114 ||| ||||||| ||||| ||| | ||||| || ||||| || | | | ||| || || Sbjct 24230489 CATGGTCTCACCAAAGATAGCATCTGGACGAGGCTTTTCTACCAGAAGGGCAGGATACAG 24230548 Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174 || | ||| || | ||| |||||||| || || ||||| ||||| || |||||||| || Sbjct 24230549 CTCCATAGCATCAATGTCACCATAGAGTGCCTCTAACTCTGCAGCCATTTCCTTCTCTCC 24230608 Query 9175 T 9175 | Sbjct 24230609 T 24230609 Score = 143 bits (158), Expect = 4e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || ||||||||||| ||| |||| || || || || ||||| || |||||||| || Sbjct 24232201 GTCTGGAACAACTGCTCATCATCCCACTCTGGATGCTCCTGTTTAAGCACATCGCACACT 24232260 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 ||||| || || | ||||| || |||||||||||||| | ||| ||||| | |||||| Sbjct 24232261 CTGTTATGCTCCCGAAGCCAAATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 24232320 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 || || | ||||| ||||| ||||| | || || || | |||| || | ||| | Sbjct 24232321 ACCTCGTGGCCCACAGCAAACCGCAGGTGCTCAGGGACATGAGGCGGGTAGATCATCTCT 24232380 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATA 9947 |||| || ||||||||||| || ||||| Sbjct 24232381 GCCTGAGTATCTTTGACGGTAGGAGGATA 24232409 Score = 116 bits (128), Expect = 5e-21 Identities = 132/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 ||| |||||||| ||||||||| | |||||||| ||||||||| ||| ||| | || Sbjct 24233340 TCTCACCCCATGGCCCAATCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 24233399 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || || ||||| || | || || || ||||||| || |||||||||||||| Sbjct 24233400 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 24233459 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 || || || | || | | || || ||| |||||||||| | | ||||| || || Sbjct 24233460 AGGAATGAACTTTCTTCTCAGAAGAAATTTCTCCACAATCTCTTTCGAATCAGGAAG 24233516 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 10389 ACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTATA 10448 ||||||||| || | || ||||| |||||| |||| || ||||| || | ||| || || Sbjct 24234145 ACCTTTCACACCCATGGGCGTAGGACAGTCATGAGGTACGGGAGGAAGGGCTCTGGTGTA 24234204 Query 10449 ATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCGG 10508 |||||| || || ||||| ||||||||||| || |||||||| | | || || || Sbjct 24234205 ATAGGAGAGGTTGGAAAAGGCTTCCCAGCTTTTATAGCCATAGTGAACATTATAAGTTGG 24234264 Query 10509 GGGACTGTCAATCA 10522 || |||||||||| Sbjct 24234265 TGGGCTGTCAATCA 24234278 >seq38 Length=20210872 Score = 131 bits (144), Expect = 2e-25 Identities = 180/249 (72%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || || |||| ||||||| || ||||| || |||||||| ||||||||| Sbjct 6384792 GTGGCAGTCTTGACAATGTTGAAACCTATCTCACCGCCAAACGTGCTGGGCTTCCAGTAC 6384733 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 | || || |||||| | ||| | | ||| || || | |||||| |||||||| | || Sbjct 6384732 TCTGGAGAACAGATGGCATTCCCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCAATTTCT 6384673 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTG-TA 9111 || || ||||| || ||||||| | ||| | || || | || | |||| | || Sbjct 6384672 ATCATACTCTCCCCAAAGATGGAATTTGGATGGCACTTCTCAA-GAAGCAGCCCCGGATA 6384614 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || || | || |||| || ||||| || |||||||||| || || ||||||||||| Sbjct 6384613 GAACTCCATGGCATCGATATCACCATATAGCTCTTCCAACTCAGCCGCCATCTCCTTCTC 6384554 Query 9172 ACCTACAAG 9180 |||||||| Sbjct 6384553 TCCTACAAG 6384545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723670798348200