Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq21 168 1e-36
seq38 131 2e-25
>seq21
Length=24716270
Score = 168 bits (186), Expect = 1e-36
Identities = 218/301 (72%), Gaps = 0/301 (0%)
Strand=Plus/Plus
Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934
||| | |||||| | | ||||| ||||||||||| || ||||| ||||| || |
Sbjct 24230309 AACACTGAACGCAGTATAGGGACAGCCCTTCACATTACTGCAGATGAGAGACTGGATTGA 24230368
Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994
|| || || | ||||| |||||||| || || || |||||||| || ||||||||
Sbjct 24230369 GGCTGTGTTGATGATGTTAAAACCTACTTCTCCACCAAAGGTGCTAGGCTTCCAGTAGTG 24230428
Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054
|| || || || || ||||||| ||||||||||| || || || || || || |
Sbjct 24230429 AGGAGAACATATAGGATTACCCATGAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTAC 24230488
Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAG 9114
||| ||||||| ||||| ||| | ||||| || ||||| || | | | ||| || ||
Sbjct 24230489 CATGGTCTCACCAAAGATAGCATCTGGACGAGGCTTTTCTACCAGAAGGGCAGGATACAG 24230548
Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174
|| | ||| || | ||| |||||||| || || ||||| ||||| || |||||||| ||
Sbjct 24230549 CTCCATAGCATCAATGTCACCATAGAGTGCCTCTAACTCTGCAGCCATTTCCTTCTCTCC 24230608
Query 9175 T 9175
|
Sbjct 24230609 T 24230609
Score = 143 bits (158), Expect = 4e-29
Identities = 157/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798
|| || ||||||||||| ||| |||| || || || || ||||| || |||||||| ||
Sbjct 24232201 GTCTGGAACAACTGCTCATCATCCCACTCTGGATGCTCCTGTTTAAGCACATCGCACACT 24232260
Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858
||||| || || | ||||| || |||||||||||||| | ||| ||||| | ||||||
Sbjct 24232261 CTGTTATGCTCCCGAAGCCAAATTGTGGCGTACATCATCAGACCAGGCACCAGACCAAAG 24232320
Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918
|| || | ||||| ||||| ||||| | || || || | |||| || | ||| |
Sbjct 24232321 ACCTCGTGGCCCACAGCAAACCGCAGGTGCTCAGGGACATGAGGCGGGTAGATCATCTCT 24232380
Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATA 9947
|||| || ||||||||||| || |||||
Sbjct 24232381 GCCTGAGTATCTTTGACGGTAGGAGGATA 24232409
Score = 116 bits (128), Expect = 5e-21
Identities = 132/177 (75%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180
||| |||||||| ||||||||| | |||||||| ||||||||| ||| ||| | ||
Sbjct 24233340 TCTCACCCCATGGCCCAATCCTTTGGTGAAAGCTGGTCCTCGCTTATGATCTGTCTTGAA 24233399
Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240
||| || || || ||||| || | || || || ||||||| || ||||||||||||||
Sbjct 24233400 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 24233459
Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297
|| || || | || | | || || ||| |||||||||| | | ||||| || ||
Sbjct 24233460 AGGAATGAACTTTCTTCTCAGAAGAAATTTCTCCACAATCTCTTTCGAATCAGGAAG 24233516
Score = 98.7 bits (108), Expect = 1e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 10389 ACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTATA 10448
||||||||| || | || ||||| |||||| |||| || ||||| || | ||| || ||
Sbjct 24234145 ACCTTTCACACCCATGGGCGTAGGACAGTCATGAGGTACGGGAGGAAGGGCTCTGGTGTA 24234204
Query 10449 ATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCGG 10508
|||||| || || ||||| ||||||||||| || |||||||| | | || || ||
Sbjct 24234205 ATAGGAGAGGTTGGAAAAGGCTTCCCAGCTTTTATAGCCATAGTGAACATTATAAGTTGG 24234264
Query 10509 GGGACTGTCAATCA 10522
|| ||||||||||
Sbjct 24234265 TGGGCTGTCAATCA 24234278
>seq38
Length=20210872
Score = 131 bits (144), Expect = 2e-25
Identities = 180/249 (72%), Gaps = 2/249 (1%)
Strand=Plus/Minus
Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992
|| || || || || |||| ||||||| || ||||| || |||||||| |||||||||
Sbjct 6384792 GTGGCAGTCTTGACAATGTTGAAACCTATCTCACCGCCAAACGTGCTGGGCTTCCAGTAC 6384733
Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052
| || || |||||| | ||| | | ||| || || | |||||| |||||||| | ||
Sbjct 6384732 TCTGGAGAACAGATGGCATTCCCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCAATTTCT 6384673
Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTG-TA 9111
|| || ||||| || ||||||| | ||| | || || | || | |||| | ||
Sbjct 6384672 ATCATACTCTCCCCAAAGATGGAATTTGGATGGCACTTCTCAA-GAAGCAGCCCCGGATA 6384614
Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171
|| || | || |||| || ||||| || |||||||||| || || |||||||||||
Sbjct 6384613 GAACTCCATGGCATCGATATCACCATATAGCTCTTCCAACTCAGCCGCCATCTCCTTCTC 6384554
Query 9172 ACCTACAAG 9180
||||||||
Sbjct 6384553 TCCTACAAG 6384545
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723670798348200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |