Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq88 102 1e-16
seq102 96.9 6e-15
>seq88
Length=11737398
Score = 102 bits (112), Expect = 1e-16
Identities = 113/151 (75%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969
||| || ||| ||||| | |||||| || ||||||| ||| || || || || |
Sbjct 360225 CCTGCTTCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCGATAT 360284
Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAA 204029
| |||||||||||||| ||||| |||||||||| | | | || || ||||| |||| |
Sbjct 360285 GGATGTTCAGAGACTGACTTTGATCGATGAAAGCCCCTCTCTCAGCTGCCATCTTGAGTA 360344
Query 204030 TGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060
|||| || || || || |||||||| |||||
Sbjct 360345 TGGTTTTTTGAGAGATTTCCCACACTGTCTT 360375
>seq102
Length=10627846
Score = 96.9 bits (106), Expect = 6e-15
Identities = 160/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 203833 CTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTA 203892
|||| |||| | | |||||||| || | || | | || || | || | ||| ||
Sbjct 1347460 CTTCTTCTTATTTAGAGTGAACTGGATTGGATTAGCCACTGGTCTTGTCCTTAAATAATA 1347401
Query 203893 CATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCAC 203952
||| || ||||| | |||| || ||| || || | | ||| || ||||| |
Sbjct 1347400 CATCCCAGTCTTCAAACCCTGCTTCCAGCCATAGAACTACATACTAGTGAGTTTCCCATA 1347341
Query 203953 GTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATC 204012
||| || || || || || ||||||||| |||||||||| || ||||||| | | | ||
Sbjct 1347340 GTTAGGCTCAGCGATATGGATGTTCAGACACTGGCTTTGATCAATGAAAGCCCCTCTCTC 1347281
Query 204013 T--GCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060
| || |||| |||| ||||| ||||| || || ||||||||||||||
Sbjct 1347280 TCAGCTTCCATCTTGAATATGGTTTTCTGAGAGATTTCCCACACCGTCTT 1347231
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795092352920880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |