Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq88 102 1e-16 seq102 96.9 6e-15 >seq88 Length=11737398 Score = 102 bits (112), Expect = 1e-16 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| ||||| | |||||| || ||||||| ||| || || || || | Sbjct 360225 CCTGCTTCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCGATAT 360284 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAA 204029 | |||||||||||||| ||||| |||||||||| | | | || || ||||| |||| | Sbjct 360285 GGATGTTCAGAGACTGACTTTGATCGATGAAAGCCCCTCTCTCAGCTGCCATCTTGAGTA 360344 Query 204030 TGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 |||| || || || || |||||||| ||||| Sbjct 360345 TGGTTTTTTGAGAGATTTCCCACACTGTCTT 360375 >seq102 Length=10627846 Score = 96.9 bits (106), Expect = 6e-15 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 203833 CTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTA 203892 |||| |||| | | |||||||| || | || | | || || | || | ||| || Sbjct 1347460 CTTCTTCTTATTTAGAGTGAACTGGATTGGATTAGCCACTGGTCTTGTCCTTAAATAATA 1347401 Query 203893 CATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCAC 203952 ||| || ||||| | |||| || ||| || || | | ||| || ||||| | Sbjct 1347400 CATCCCAGTCTTCAAACCCTGCTTCCAGCCATAGAACTACATACTAGTGAGTTTCCCATA 1347341 Query 203953 GTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATC 204012 ||| || || || || || ||||||||| |||||||||| || ||||||| | | | || Sbjct 1347340 GTTAGGCTCAGCGATATGGATGTTCAGACACTGGCTTTGATCAATGAAAGCCCCTCTCTC 1347281 Query 204013 T--GCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 | || |||| |||| ||||| ||||| || || |||||||||||||| Sbjct 1347280 TCAGCTTCCATCTTGAATATGGTTTTCTGAGAGATTTCCCACACCGTCTT 1347231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795092352920880