Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq40 149 1e-30 seq175 132 1e-25 seq131 127 5e-24 seq113 89.7 1e-12 seq5 86.0 1e-11 >seq40 Length=19935044 Score = 149 bits (164), Expect = 1e-30 Identities = 153/200 (77%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || ||||||||||| |||| ||||||||||| | ||| | ||||||||||||||| Sbjct 1219241 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 1219182 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || || |||||||| | ||||||||| ||| || |||||| ||||| ||||| Sbjct 1219181 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTA 1219122 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| ||| |||| |||||| | | ||| || |||| ||||| ||||| ||||| Sbjct 1219121 GCCTTTACGTTCTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCCGTT 1219062 Query 199607 AGAGTTTTCACAAAAATTTG 199626 || || || || |||||||| Sbjct 1219061 AGGGTCTTTACGAAAATTTG 1219042 Score = 116 bits (128), Expect = 9e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||| || ||||| ||||| || |||| |||||||||| | ||| | |||||| Sbjct 1219682 AGGACAAGATGCAGAGTTGACTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCT 1219623 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| || || |||||||| | ||||||||| ||| || |||||| ||| Sbjct 1219622 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 1219563 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569 || ||||| ||||||| |||| ||| || Sbjct 1219562 TGGATCTTGGCCTTCACGTTCTCGATGGTATC 1219531 >seq175 Length=5584636 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||||||| ||||| || ||||| ||||||||||| | |||||||||| |||||| Sbjct 1836519 CGAAGTCTCTACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAAACAAAGTA 1836460 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 |||||||||||| | || || || ||||| || | ||| || || ||| |||||||| Sbjct 1836459 GGTCCATCTTCCAGTTTTTTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAGAAATTCCT 1836400 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||| ||||| || || ||| | || |||| | ||| | || | Sbjct 1836399 TCTTTATCCTGGATCTTGGCTTTTACATTTTCTATTGTATCTGAGGGTTCATCCTCAAGA 1836340 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||| | || ||||| |||||||| || Sbjct 1836339 GTGATGGTCTTCCCCATTAGGGTTTTTACAAAAATGTG 1836302 >seq131 Length=8015323 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| || || ||||| || |||| ||||||||||| || || | |||||| Sbjct 2518429 CAGGACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGTCCATC 2518488 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| | | ||||||||| ||| ||| ||||| || Sbjct 2518489 TTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTC 2518548 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || |||||| ||| || || | |||||| | | ||||| || | ||||| || Sbjct 2518549 TTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATTGT 2518608 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||| || | || ||||| || || || Sbjct 2518609 CTTACCGGTCAAGGTCTTCACGAAGATCTG 2518638 >seq113 Length=9683949 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/135 (76%), Gaps = 3/135 (2%) Strand=Plus/Plus Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470 |||||||| ||||| || ||||| |||||||| | | ||||||||||| ||| || | Sbjct 8523890 AAGTCTCAACACAAGATGAAGAGTTGACTCCTTA-GAATGTTGTAGTCAGACAAGGTACG 8523948 Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 |||||||||||| || | | || ||||| || | ||||||| ||| ||||||||| Sbjct 8523949 TCCATCTTCCAGTTGTTAGTCAGCAAAGATCAGTCTCTGCTGG--AGGAGGAATTCCTTC 8524006 Query 199531 TCGCTCCTGAATCTT 199545 ||||| ||||| Sbjct 8524007 CTTATCCTGGATCTT 8524021 >seq5 Length=36277496 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 199437 ACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGA 199496 || ||||||| | ||||||||||| ||| || | |||||||||||| ||||| || || | Sbjct 6835123 ACACCTTTTGAATGTTGTAGTCAGACAAGGTACGTCCATCTTCCAGTTGCTTGCCAGCAA 6835182 Query 199497 AGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 |||| || | |||||| || ||| ||||||| Sbjct 6835183 AGATAAGCCTCTGCTGATCAGGAGGAATTCCT 6835214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178826091508641