Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq40 149 1e-30
seq175 132 1e-25
seq131 127 5e-24
seq113 89.7 1e-12
seq5 86.0 1e-11
>seq40
Length=19935044
Score = 149 bits (164), Expect = 1e-30
Identities = 153/200 (77%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486
|| || ||||||||||| |||| ||||||||||| | ||| | |||||||||||||||
Sbjct 1219241 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 1219182
Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546
|| || || |||||||| | ||||||||| ||| || |||||| ||||| |||||
Sbjct 1219181 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTA 1219122
Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606
||| ||| |||| |||||| | | ||| || |||| ||||| ||||| |||||
Sbjct 1219121 GCCTTTACGTTCTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCCGTT 1219062
Query 199607 AGAGTTTTCACAAAAATTTG 199626
|| || || || ||||||||
Sbjct 1219061 AGGGTCTTTACGAAAATTTG 1219042
Score = 116 bits (128), Expect = 9e-21
Identities = 117/152 (77%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
|||||||| || ||||| ||||| || |||| |||||||||| | ||| | ||||||
Sbjct 1219682 AGGACAAGATGCAGAGTTGACTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCT 1219623
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537
||||||||||| || || |||||||| | ||||||||| ||| || |||||| |||
Sbjct 1219622 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 1219563
Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569
|| ||||| ||||||| |||| ||| ||
Sbjct 1219562 TGGATCTTGGCCTTCACGTTCTCGATGGTATC 1219531
>seq175
Length=5584636
Score = 132 bits (146), Expect = 1e-25
Identities = 160/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
||||||||| ||||| || ||||| ||||||||||| | |||||||||| ||||||
Sbjct 1836519 CGAAGTCTCTACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAAACAAAGTA 1836460
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
|||||||||||| | || || || ||||| || | ||| || || ||| ||||||||
Sbjct 1836459 GGTCCATCTTCCAGTTTTTTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAGAAATTCCT 1836400
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
||| ||||| ||||| || || ||| | || |||| | ||| | || |
Sbjct 1836399 TCTTTATCCTGGATCTTGGCTTTTACATTTTCTATTGTATCTGAGGGTTCATCCTCAAGA 1836340
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| ||| | || ||||| |||||||| ||
Sbjct 1836339 GTGATGGTCTTCCCCATTAGGGTTTTTACAAAAATGTG 1836302
>seq131
Length=8015323
Score = 127 bits (140), Expect = 5e-24
Identities = 154/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476
|||||| ||||| || || ||||| || |||| ||||||||||| || || | ||||||
Sbjct 2518429 CAGGACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGTCCATC 2518488
Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536
|||||||||||| || || ||||| | | ||||||||| ||| ||| ||||| ||
Sbjct 2518489 TTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTC 2518548
Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
|| |||||| ||| || || | |||||| | | ||||| || | ||||| ||
Sbjct 2518549 TTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTGATTGT 2518608
Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
|||||| || | || ||||| || || ||
Sbjct 2518609 CTTACCGGTCAAGGTCTTCACGAAGATCTG 2518638
>seq113
Length=9683949
Score = 89.7 bits (98), Expect = 1e-12
Identities = 102/135 (76%), Gaps = 3/135 (2%)
Strand=Plus/Plus
Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470
|||||||| ||||| || ||||| |||||||| | | ||||||||||| ||| || |
Sbjct 8523890 AAGTCTCAACACAAGATGAAGAGTTGACTCCTTA-GAATGTTGTAGTCAGACAAGGTACG 8523948
Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530
|||||||||||| || | | || ||||| || | ||||||| ||| |||||||||
Sbjct 8523949 TCCATCTTCCAGTTGTTAGTCAGCAAAGATCAGTCTCTGCTGG--AGGAGGAATTCCTTC 8524006
Query 199531 TCGCTCCTGAATCTT 199545
||||| |||||
Sbjct 8524007 CTTATCCTGGATCTT 8524021
>seq5
Length=36277496
Score = 86.0 bits (94), Expect = 1e-11
Identities = 74/92 (80%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 199437 ACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGA 199496
|| ||||||| | ||||||||||| ||| || | |||||||||||| ||||| || || |
Sbjct 6835123 ACACCTTTTGAATGTTGTAGTCAGACAAGGTACGTCCATCTTCCAGTTGCTTGCCAGCAA 6835182
Query 199497 AGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
|||| || | |||||| || ||| |||||||
Sbjct 6835183 AGATAAGCCTCTGCTGATCAGGAGGAATTCCT 6835214
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178826091508641
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |