Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq40 114 1e-20 seq131 109 6e-19 seq209 87.8 2e-12 seq24 87.8 2e-12 >seq40 Length=19935044 Score = 114 bits (126), Expect = 1e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || |||||||| | || || ||||||||||| || || Sbjct 1219230 CTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 1219171 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | ||||||||| | || | || || || ||| |||||| ||| | | Sbjct 1219170 GATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTAGCCTTTACGTT 1219111 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || | |||||| |||| |||||||| || ||||| || || || || Sbjct 1219110 CTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCCGTTAGGGTCTTTAC 1219051 Query 46582 AAAGATTTGCATTTTG 46597 || ||||||||| || Sbjct 1219050 GAAAATTTGCATTCTG 1219035 >seq131 Length=8015323 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || || |||| ||||| |||| || ||| || ||||| |||||||| || Sbjct 2518415 CCTCCCCTCAAGCGCAGGACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2518474 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || || ||||||||||| || || ||||| | ||||||||| | || Sbjct 2518475 AGGGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGA 2518534 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||||| |||||| ||||| || | | ||||| || | || || Sbjct 2518535 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACT 2518594 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || | ||||| || || || |||| || || || ||||| |||||| Sbjct 2518595 TCAAGGGTGATTGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATT 2518642 >seq209 Length=4208363 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/189 (71%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 46409 TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAG 46468 ||||| |||||||| || || |||| | || || || |||||||| || || || | Sbjct 4009478 TGGATGTTGTAGTCAGAAAG--TGCGACCATCTTC-AGGTGCTTGCCTGCAAAGATGAGC 4009534 Query 46469 CGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACC 46528 | ||||||||| | || | || || || ||| || ||| ||| | || | | Sbjct 4009535 CTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGAGCTTAGCCTTTATGTTCTCAATG 4009594 Query 46529 GTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATT 46588 ||||| || | |||||| |||| |||||||| ||||| ||||| | || | |||||| Sbjct 4009595 GTGTCCCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGATCTTTATGAAGATT 4009654 Query 46589 TGCATTTTG 46597 ||||||||| Sbjct 4009655 TGCATTTTG 4009663 >seq24 Length=24352400 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/193 (70%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 || ||| ||||| || || || || |||||||| | || || ||||| ||||| || | Sbjct 13198983 CTGCTTCTGGATGTTATACTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCACA 13199042 Query 46462 TATCAAGCGCTGCTGGTCGGCCG-GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG 46520 |||| |||||||||| | | | | || |||||||||| ||| || |||| Sbjct 13199043 AATCAGATGCTGCTGGTCAGGGGAGGATGCCCTCCTTGTCCTGGATTTTGGCTTTGACGT 13199102 Query 46521 TCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 || | | ||||| || | || || || | |||||||| |||||| |||| || || | Sbjct 13199103 TCTCGATGGTGTCACTGGGCTCAACCTCGAAGGTGATGGTCTTGCCCATCAGGGTCTTCA 13199162 Query 46581 CAAAGATTTGCAT 46593 ||||||||||| Sbjct 13199163 TGAAGATTTGCAT 13199175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565193724969960