Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq40 114 1e-20
seq131 109 6e-19
seq209 87.8 2e-12
seq24 87.8 2e-12
>seq40
Length=19935044
Score = 114 bits (126), Expect = 1e-20
Identities = 143/196 (73%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| || |||||||| | || || ||||||||||| || ||
Sbjct 1219230 CTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 1219171
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | | ||||||||| | || | || || || ||| |||||| ||| | |
Sbjct 1219170 GATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTAGCCTTTACGTT 1219111
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | ||||| || | |||||| |||| |||||||| || ||||| || || || ||
Sbjct 1219110 CTCGATGGTGTCACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCCGTTAGGGTCTTTAC 1219051
Query 46582 AAAGATTTGCATTTTG 46597
|| ||||||||| ||
Sbjct 1219050 GAAAATTTGCATTCTG 1219035
>seq131
Length=8015323
Score = 109 bits (120), Expect = 6e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||| || || |||| ||||| |||| || ||| || ||||| |||||||| ||
Sbjct 2518415 CCTCCCCTCAAGCGCAGGACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCAGAC 2518474
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|| || || | || || ||||||||||| || || ||||| | ||||||||| | ||
Sbjct 2518475 AGGGTACGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGA 2518534
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| || |||||||| |||||| ||||| || | | ||||| || | || ||
Sbjct 2518535 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACT 2518594
Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
|| | ||||| || || || |||| || || || ||||| ||||||
Sbjct 2518595 TCAAGGGTGATTGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATT 2518642
>seq209
Length=4208363
Score = 87.8 bits (96), Expect = 2e-12
Identities = 134/189 (71%), Gaps = 3/189 (2%)
Strand=Plus/Plus
Query 46409 TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAG 46468
||||| |||||||| || || |||| | || || || |||||||| || || || |
Sbjct 4009478 TGGATGTTGTAGTCAGAAAG--TGCGACCATCTTC-AGGTGCTTGCCTGCAAAGATGAGC 4009534
Query 46469 CGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACC 46528
| ||||||||| | || | || || || ||| || ||| ||| | || | |
Sbjct 4009535 CTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGAGCTTAGCCTTTATGTTCTCAATG 4009594
Query 46529 GTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATT 46588
||||| || | |||||| |||| |||||||| ||||| ||||| | || | ||||||
Sbjct 4009595 GTGTCCCTGGGTTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGATCTTTATGAAGATT 4009654
Query 46589 TGCATTTTG 46597
|||||||||
Sbjct 4009655 TGCATTTTG 4009663
>seq24
Length=24352400
Score = 87.8 bits (96), Expect = 2e-12
Identities = 136/193 (70%), Gaps = 1/193 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|| ||| ||||| || || || || |||||||| | || || ||||| ||||| || |
Sbjct 13198983 CTGCTTCTGGATGTTATACTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCACA 13199042
Query 46462 TATCAAGCGCTGCTGGTCGGCCG-GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG 46520
|||| |||||||||| | | | | || |||||||||| ||| || ||||
Sbjct 13199043 AATCAGATGCTGCTGGTCAGGGGAGGATGCCCTCCTTGTCCTGGATTTTGGCTTTGACGT 13199102
Query 46521 TCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
|| | | ||||| || | || || || | |||||||| |||||| |||| || || |
Sbjct 13199103 TCTCGATGGTGTCACTGGGCTCAACCTCGAAGGTGATGGTCTTGCCCATCAGGGTCTTCA 13199162
Query 46581 CAAAGATTTGCAT 46593
|||||||||||
Sbjct 13199163 TGAAGATTTGCAT 13199175
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565193724969960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |