Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq40 120 3e-22
seq24 116 4e-21
seq131 109 5e-19
seq59 105 7e-18
>seq40
Length=19935044
Score = 120 bits (132), Expect = 3e-22
Identities = 151/205 (74%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
||||||||| |||||||| || || ||||| || ||||||||| | || || || |||
Sbjct 1219038 AATGCAAATTTTCGTAAAGACCCTAACGGGAAAGACCATCACCCTGGAGGTGGAACCCAG 1219097
Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|||| | | | |||| | || | || |||| || ||||| || || || | ||||
Sbjct 1219098 TGACACCATCGAGAACG-TAAAGGCTAAGATCCAGGATAAAGAAGGCATCCCTCCTGACC 1219156
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| ||| ||||||| | || ||||| |||||||| || | ||||| || |||||||
Sbjct 1219157 AGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACA 1219216
Query 38422 ACATCCAAAAGGAAGCGACGCTGCA 38446
||||||| ||||| |||| |||||
Sbjct 1219217 ACATCCAGAAGGAGTCGACCCTGCA 1219241
>seq24
Length=24352400
Score = 116 bits (128), Expect = 4e-21
Identities = 167/230 (73%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||| | || || || | |||||| ||||||||| |||| || ||| |||
Sbjct 13199175 ATGCAAATCTTCATGAAGACCCTGATGGGCAAGACCATCACCTTCGAGGTTGAGCCCAGT 13199116
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361
|||| | | | |||| | |||| ||||||| ||||| ||||| || | | || ||||
Sbjct 13199115 GACACCATCGAGAACG-TCAAAGCCAAAATCCAGGACAAGGAGGGCATCCTCCCCTGACC 13199057
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| |||| || |||| || |||||||||||||| || | ||||| ||| || || |
Sbjct 13199056 AGCAGCATCTGATTTGTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGAGTATA 13198997
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||||||| ||| | | | ||| | ||| ||||||| ||| || |||
Sbjct 13198996 ACATCCAGAAGCAGTCCTC-CTGTACCTGGCGCTGCGTCTGAATGGTGGC 13198948
>seq131
Length=8015323
Score = 109 bits (120), Expect = 5e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
|||||| || ||||| || || | || || || || |||||| | || || ||| |||
Sbjct 2518642 AATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACAATCACCCTTGAAGTAGAGCCCAG 2518583
Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | | | || | ||| |||| ||||| || || ||||| | |||||
Sbjct 2518582 TGACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCA 2518523
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| || | || | || ||||| |||||||| || | || ||||| ||||||||
Sbjct 2518522 GCAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACCCTGTCTGACTACAA 2518463
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| || || | |||||||| |||| ||||| ||||| || ||
Sbjct 2518462 CATCCAGAAAGAGTCCACGCTGCACCTGGTCCTGCGCTTGAGGGGAGG 2518415
>seq59
Length=15706754
Score = 105 bits (116), Expect = 7e-18
Identities = 163/229 (71%), Gaps = 3/229 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || | ||||| ||||| |||||||| | || ||||| |||
Sbjct 4366366 ATGCAGATCTTTGTGAAGATCCTCACAGGCAAGACCATCACTCTTGAGTTCGAGCCCAGT 4366307
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | |||| | |||| ||||||| ||||| ||||| || || |||||||
Sbjct 4366306 GACATCATCAAGAACG-TCAAAGCCAAAATCCAAGACAAGGAGGGCATCTCCCCCGACCA 4366248
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| || | | | |||||| ||||||| ||| | | ||| ||| | ||||||||
Sbjct 4366247 GCAGCGTCTGACTGTTACAGGCAAAGAGCTGGAGGACAATCACACTCTCTA-GACTACAA 4366189
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||| || || || | || |||| |||||| | || || | ||| ||
Sbjct 4366188 CATTCAGAAAGAGTCCACCATGCACCTGGTGCCGTGTCTGTGCGGCAGC 4366140
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500133267592320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |