Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq40 120 3e-22 seq24 116 4e-21 seq131 109 5e-19 seq59 105 7e-18 >seq40 Length=19935044 Score = 120 bits (132), Expect = 3e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| |||||||| || || ||||| || ||||||||| | || || || ||| Sbjct 1219038 AATGCAAATTTTCGTAAAGACCCTAACGGGAAAGACCATCACCCTGGAGGTGGAACCCAG 1219097 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | || | || |||| || ||||| || || || | |||| Sbjct 1219098 TGACACCATCGAGAACG-TAAAGGCTAAGATCCAGGATAAAGAAGGCATCCCTCCTGACC 1219156 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| ||||||| | || ||||| |||||||| || | ||||| || ||||||| Sbjct 1219157 AGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACA 1219216 Query 38422 ACATCCAAAAGGAAGCGACGCTGCA 38446 ||||||| ||||| |||| ||||| Sbjct 1219217 ACATCCAGAAGGAGTCGACCCTGCA 1219241 >seq24 Length=24352400 Score = 116 bits (128), Expect = 4e-21 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||| | || || || | |||||| ||||||||| |||| || ||| ||| Sbjct 13199175 ATGCAAATCTTCATGAAGACCCTGATGGGCAAGACCATCACCTTCGAGGTTGAGCCCAGT 13199116 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| | | | |||| | |||| ||||||| ||||| ||||| || | | || |||| Sbjct 13199115 GACACCATCGAGAACG-TCAAAGCCAAAATCCAGGACAAGGAGGGCATCCTCCCCTGACC 13199057 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | |||| || |||| || |||||||||||||| || | ||||| ||| || || | Sbjct 13199056 AGCAGCATCTGATTTGTGCAGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGAGTATA 13198997 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||| | | | ||| | ||| ||||||| ||| || ||| Sbjct 13198996 ACATCCAGAAGCAGTCCTC-CTGTACCTGGCGCTGCGTCTGAATGGTGGC 13198948 >seq131 Length=8015323 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || | || || || || |||||| | || || ||| ||| Sbjct 2518642 AATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACAATCACCCTTGAAGTAGAGCCCAG 2518583 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | || | ||| |||| ||||| || || ||||| | ||||| Sbjct 2518582 TGACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATTCCTCCTGACCA 2518523 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || ||||| |||||||| || | || ||||| |||||||| Sbjct 2518522 GCAGAGGTTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGTACCCTGTCTGACTACAA 2518463 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || || | |||||||| |||| ||||| ||||| || || Sbjct 2518462 CATCCAGAAAGAGTCCACGCTGCACCTGGTCCTGCGCTTGAGGGGAGG 2518415 >seq59 Length=15706754 Score = 105 bits (116), Expect = 7e-18 Identities = 163/229 (71%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || | ||||| ||||| |||||||| | || ||||| ||| Sbjct 4366366 ATGCAGATCTTTGTGAAGATCCTCACAGGCAAGACCATCACTCTTGAGTTCGAGCCCAGT 4366307 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | |||| ||||||| ||||| ||||| || || ||||||| Sbjct 4366306 GACATCATCAAGAACG-TCAAAGCCAAAATCCAAGACAAGGAGGGCATCTCCCCCGACCA 4366248 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || | | | |||||| ||||||| ||| | | ||| ||| | |||||||| Sbjct 4366247 GCAGCGTCTGACTGTTACAGGCAAAGAGCTGGAGGACAATCACACTCTCTA-GACTACAA 4366189 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||| || || || | || |||| |||||| | || || | ||| || Sbjct 4366188 CATTCAGAAAGAGTCCACCATGCACCTGGTGCCGTGTCTGTGCGGCAGC 4366140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500133267592320