Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq327 149 2e-30
seq9 132 2e-25
seq23 127 8e-24
seq125 104 9e-17
seq175 100 1e-15
seq38 96.9 1e-14
seq269 87.8 7e-12
>seq327
Length=991026
Score = 149 bits (164), Expect = 2e-30
Identities = 269/390 (69%), Gaps = 5/390 (1%)
Strand=Plus/Minus
Query 451217 TATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAA 451276
|| ||||| |||| |||| |||| |||||| ||||| || |||||||| || |||||
Sbjct 317790 TACAAAGGAGAAAATAAAGCTTTCTATCCTGAGGAAATCTCTTCTATGGTCCTGACTAAG 317731
Query 451277 ATGAAAGAAACAGCAGAACAATATATTGGTTCTC-CAGTTACTGATGCAGTAATTACTGT 451335
||||| || || || ||| | | |||| | | | ||||| |||| || || || ||
Sbjct 317730 ATGAAGGAGACTGCTGAAGCTTTT-TTGGGCCACTCTGTTACCAATGCTGTGATCACCGT 317672
Query 451336 TCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGG 451395
|| || |||||||||||| | ||||| || || || || |||||||| |||||| ||
Sbjct 317671 GCCAGCCTATTTCAATGATTCTCAACGCCAGGCCACCAAGGATGCAGGTGTTATTGCAGG 317612
Query 451396 TTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGG 451455
| ||||| || |||| || |||||||| ||||| |||||| | || ||||| |||
Sbjct 317611 ACTCAATGTGCTGAGAATCATCAATGAACCCACAGCTGCTGCTATTGCCTATGGTTTAGA 317552
Query 451456 AAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCA 451515
|| | || || ||| | | | || | || ||| | || ||||| ||
Sbjct 317551 TAA---AGGAGGTCAAGGAGAGCGACACGTCTTGATCTTCGATCTAGGCGGAGGCACGTT 317495
Query 451516 TGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGA 451575
|||| || | || | || || |||||| | ||||| || ||||| || ||| ||
Sbjct 317494 TGATGTGTCCATTCTGACTATAGATGATGGGATTTTTGAGGTGAAGGCCACAGCTGGGGA 317435
Query 451576 TACTCATCTAGGAGGTGAAGATATTGATAA 451605
|| || || || || || ||| |||| ||
Sbjct 317434 CACCCACCTGGGTGGGGAGGATTTTGACAA 317405
>seq9
Length=34412642
Score = 132 bits (146), Expect = 2e-25
Identities = 391/598 (65%), Gaps = 15/598 (3%)
Strand=Plus/Plus
Query 451896 ATGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGTCTT 451955
|||| ||||| || || || |||||||| | ||||| || ||||| || | | ||
Sbjct 32893084 ATGACATTGTCCTGGTGGGTGGTTCTACCCATATTCCCAAGATTCA-GAAACTTCTTCAG 32893142
Query 451956 CTTATTTTGGA-GGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATAT 452014
| | || | |||||| || || |||||| | ||||||||||| ||| |||| |||
Sbjct 32893143 GATTTCTTCAATGGAAAAGAATTAAACAAGAGCATCAATCCTGATGAGGCTATTGCTTAT 32893202
Query 452015 GGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAATTAGGAGATATT 452074
||||| || || || ||| | || || | || | | |||||| | |||| |
Sbjct 32893203 GGTGCAGCTGTCCAGGCAACCATCTTATCTGGAGAAAAATCTGAAAATGTTCAAGATTTG 32893262
Query 452075 CTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACT 452134
||| | | ||||| || ||||| |||||||| ||||||| ||||||||| | ||||||
Sbjct 32893263 CTGCTCTTGGATGTCACTCCTCTTTCTCTTGGTATTGAAACTGCTGGTGGAGTCATGACT 32893322
Query 452135 AATTTAATTAAACG-AGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGC 452193
| || || | | ||| | |||||| || ||| || | || | ||
Sbjct 32893323 GTCCTGATCAAGTGCAAATACTACCATTCCTACCAAGCAGATGCAGTCCTTCACAACCTA 32893382
Query 452194 AAGTGATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACG 452253
||| ||| | || ||||| ||||| || | |||||| || | ||| |||||
Sbjct 32893383 CTCTGACAACTAGCCTGGTGTGCTCATTCAGGTTTATGAAGGTGAGCATGCCATGACCAA 32893442
Query 452254 AGATAATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAAC 452313
||||| || || || | ||| || || ||| |||||| || | ||
Sbjct 32893443 GGATAACAACTTGCTTGGCAAGTTTGAATTTACAGGCATACCTCCTGCACCCTGTGGTGT 32893502
Query 452314 TCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGT 452373
|||||| ||||| | || | |||| ||||||| |||||||| ||| ||
Sbjct 32893503 TCCTCAGATTGAGGTAACTTTTGATATTGATGC----------CTTAATGTCTCTGCTGT 32893552
Query 452374 TGAAAAATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACCGTTTAT 452432
|| ||| |||||||| |||| || ||||| || |||||||| || | | ||
Sbjct 32893553 GGATAAAAGTACTGGAAAA-GAGAACAAGATTACCATCACTAATGACAAGGGCTGCTTGA 32893611
Query 452433 CTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGA 452490
||||||||| ||||| | ||||| | |||| || | | ||| | ||| |||||
Sbjct 32893612 GTAAAGAAGACATTGAGCATATGGTCCAGAAAGCTGAGATGTACAAAGCTGAAGATGA 32893669
Score = 98.7 bits (108), Expect = 4e-15
Identities = 272/414 (66%), Gaps = 5/414 (1%)
Strand=Plus/Plus
Query 451192 AGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGA 451251
||| | |||| | | |||||| | ||||| || || || |||| ||| ||| || ||
Sbjct 32892386 AGGCAGGCCCAAGGTCCAAGTAGAATATAAGGGAGAGACCAAAAGTTTCTATCCAGAGGA 32892445
Query 451252 AATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCC 451311
| ||||| |||||||| || |||||||| |||| || ||| || |||| |
Sbjct 32892446 GGTGTCATCCATGGTTCTGACAAAAATGAAGGAAATTGCTGAAGCCTACCTTGGAAAGAC 32892505
Query 451312 AGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371
||||| |||| || | ||||| || || || || || ||| || || || || ||
Sbjct 32892506 TGTTACCAATGCTGTTGTCACTGTACCAGCCTACTTTAACGATCCAG--CGTCAGGCTAC 32892563
Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431
|||||||| ||| |||||||| | |||| || |||| || ||||| || || ||
Sbjct 32892564 GAAAGATGCTGGAACCATTGCTGGCCTTGATGTACTGAGAATCATCAATGAGCCAACTGC 32892623
Query 451432 AGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGT 451491
| | | | || |||| ||| | || ||| | | |||| |||| | | |
Sbjct 32892624 TGTGGTTATTGCTTATG-ACTTAAACAA--AAAGGTTGGTGCTGAAAGAAATGTGCTGAT 32892680
Query 451492 ATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATT 451551
||||| || || | || ||| |||| || | || | ||||||||||| | ||
Sbjct 32892681 CTTTGACTTAGGAAGTGGCACTTTTGATTTGTCAATCCTCACTATTGAAGATGGAATCTT 32892740
Query 451552 TGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605
||| || ||| | || ||| || || ||| || | | ||||| |||| ||
Sbjct 32892741 TGAGGTCAAGTCTACAGCTGGAGACACCCATTTAAGTAGAGAAGACTTTGACAA 32892794
>seq23
Length=24341844
Score = 127 bits (140), Expect = 8e-24
Identities = 443/689 (64%), Gaps = 7/689 (1%)
Strand=Plus/Minus
Query 450919 TGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTAGA 450978
||| ||||||||||| ||||||| || ||||| ||||| | || ||||||| || ||
Sbjct 18524717 TGGCATTGATCTTGGCACCACCTGCTCTTGTGTGGGTGTCTTTCAGCATGGAAAAGTGGA 18524658
Query 450979 AATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGATTC 451038
|| || ||||| || || || ||||| || || | || |||||| ||| |
Sbjct 18524657 GATAATTGCAAAAGATCAGGGCAACCGAACCACCCCAAGCTACGTCGCTTTTACTGATAC 18524598
Query 451039 AGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGCCAAAAACACA 451096
||| || | | || | || || || ||||| ||| ||| ||| ||||||
Sbjct 18524597 CGAACGATTGATTGGTGATGCCGCCAAGAATCAAGTTGCAATG--AATCCCACTAACACA 18524540
Query 451097 GTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAAAAGAG 451156
|| | ||||| |||||| | | ||| || | | |||||||| ||| || ||
Sbjct 18524539 GTTTTCGATGCCAAACGTCTGACTGGACGAAGATTTGATGATGCAGTTGTCCAGTCTGAT 18524480
Query 451157 AAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAGTAAAT 451216
| || | | | || || || ||| | ||| | |||| | | || ||| |
Sbjct 18524479 ATGAAGCATTGGCCGTTTGTGGTGGTGAATGATGCAGGCAGGCCCAAGGTCCAGGTAGAA 18524420
Query 451217 TATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAA 451276
||||| || || || |||| ||| ||| || | | |||||||||||||| || |||
Sbjct 18524419 TATAAGGGAGAGACCAAAAGTTTCTATCCAGAGGGGGTGTCATCTATGGTTCTGACAAAA 18524360
Query 451277 ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTT 451336
||||| |||| ||| | || |||| | ||||| |||| || | |||||
Sbjct 18524359 ATGAAGGAAATTACAGGAGCCTACTTTGGAAAGACTGTTACCAATGCTGTTGTCACTGTA 18524300
Query 451337 CCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGT 451396
|| || || || || | | || || || || || |||||||| ||| ||||||||
Sbjct 18524299 CCAGCCTACTTTAACCACTCTCAGCGTCAGGCTACCAAAGATGCTGGAACCATTGCTGGC 18524240
Query 451397 TTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGA 451456
| ||| || |||| || || | || || || |||||| | || ||||| |||
Sbjct 18524239 CTCGGTGTACTGAGAATCATCAACAAGCCAACTGCTGCTGCTATTGCTTATGGCTTAG-- 18524182
Query 451457 AAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCAT 451516
| ||| | | |||| ||||||| | | ||||| || || || || || |
Sbjct 18524181 -ACAGAAAGGTTGGTGCTGAAAGAAATATTCTGATCTTTGACTTAGGAGGTGGCCCTTTT 18524123
Query 451517 GATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGAT 451576
| | || || || | ||||||||||| | ||||| || || | || ||| |
Sbjct 18524122 GGTGTGTCAGTCCTCACTATTGAAGATGGAATCTTTGAGGTCAAATCTACAGCTGGATAC 18524063
Query 451577 ACTCATCTAGGAGGTGAAGATATTGATAA 451605
|| || |||| || ||||| |||| ||
Sbjct 18524062 ACCCACTTAGGTGGAGAAGACTTTGACAA 18524034
>seq125
Length=8553959
Score = 104 bits (114), Expect = 9e-17
Identities = 448/699 (64%), Gaps = 17/699 (2%)
Strand=Plus/Minus
Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973
||| |||| ||| ||||||| || |||| || ||||| |||| | ||| |||||||
Sbjct 5857623 GCAGTTGGCATTAATCTTGGCACTACCTACTCCTGTGTGGGTGCCTTCCAGCATGGAAAA 5857564
Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACG 451033
|| || || || ||| ||| || || | ||| || || | || | ||||||
Sbjct 5857563 GTGGAGATAATTGCAGCTGATCAGGGCAACCAAACCACCCCAAGCTATGTCACTTTTACT 5857504
Query 451034 GATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGCCAAAA 451091
||| | ||| || | || | || | || ||||| ||| ||| ||| |
Sbjct 5857503 GATACCGAACGATTGACTGGTGATGCCACCAAGAATCAAGTTGCAATG--AATCCCACTA 5857446
Query 451092 ACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAA 451151
||||||| | ||||| |||||| | ||||| | | | |||||||| ||| ||
Sbjct 5857445 ACACAGTGTTCGATGCCAAACGTCTGATTGGATGAAGATTTGATGATGCAGTTGTCCAGT 5857386
Query 451152 AAGAGAAAAA--ATT--CTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATT 451207
|| | || ||| | ||| ||| || || ||| | ||| | | || |
Sbjct 5857385 CTGATATGAAGCATTGGCCCTTC--ATGGTG--GTGAATGATGCAGGCAGGTCCACGGTC 5857330
Query 451208 CAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATT-TCATCTATGGT 451266
|||||| | |||| || || || ||| ||| || || |||| | |||||||||||
Sbjct 5857329 CAAGTAGAACATAAGGGAGAGACCAAACGTTTCTATC-TGGAGAAGGTGTCATCTATGGT 5857271
Query 451267 TCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGT 451326
||| || |||||||| ||||| |||||| || || | | ||||| |||| ||
Sbjct 5857270 TCTGACAAAAATGAAGGAAACTGCAGAAGCCTACCTTAGAAAGACTGTTACCAATGCTGT 5857211
Query 451327 AATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACA 451386
| ||||| | || || || || || | || | || || || |||||||| |||
Sbjct 5857210 TGTCACTGTATCAGCCTACTTTAACGACTCTCAGCATCAGGCTACCAAAGATGCTGGAAC 5857151
Query 451387 TATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATA 451446
||||||||| | ||||| || |||| | || || || || || |||||| | ||
Sbjct 5857150 TATTGCTGGCCTCAATGTACTGAGAATCACCAACGAGCCAACTGCTGCTGCTATTCTTTA 5857091
Query 451447 TGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGG 451506
||| ||| || ||| | | |||| |||| | | | ||| | || || ||
Sbjct 5857090 TGGCTTAGACAA---AAAGGTTGGTGCTGAAAGAAATGTGCTGATTTTTTACTTAGGAGG 5857034
Query 451507 AGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAAC 451566
|| ||| |||| || | || || ||||||||||| | || || || || | ||
Sbjct 5857033 TGGCACTTTTGATGTGTCAATCCTCTCTATTGAAGATGGAATCTTCGAGGTCAAATCTAC 5856974
Query 451567 CAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605
||| || || || |||| || ||||| |||| ||
Sbjct 5856973 AGTTGGAGACACCCACTTAGGTGGAGAAGACTTTGACAA 5856935
>seq175
Length=5584636
Score = 100 bits (110), Expect = 1e-15
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | ||||| || ||||| || | || || || || |||||||| | |||| | ||
Sbjct 1836299 ATGCACATTTTTGTAAAAACCCTAATGGGGAAGACCATCACTCTTGAGGATGAACCCTCA 1836358
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|||| || ||| | | ||| || || || ||||| ||||||||| |||||||||||
Sbjct 1836359 GATACAATAGAAAATGTAAAAGCCAAGATCCAGGATAAAGAAGGAATTTCTCCTGATCAA 1836418
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| | | || || | || ||| |||| ||||||||| |||||| || || ||
Sbjct 1836419 CAGAGACTGATCTTTGCTGGCAAAAAACTGGAAGATGGACCTACTTTGTTTGACTACAAC 1836478
Query 391230 ATTGATAAGGATGCAACACTTCA 391252
||| | ||||| | || |||||
Sbjct 1836479 ATTCAAAAGGAGTCTACTCTTCA 1836501
>seq38
Length=20210872
Score = 96.9 bits (106), Expect = 1e-14
Identities = 89/113 (79%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372
||||| | ||||| ||||||| || || |||||||||||||| || || ||||||||
Sbjct 9534711 GTTACCCACGCAGTTGTTACTGTACCAGCCTATTTCAATGATGCCCAGCGTCAAGCAACC 9534652
Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425
|||||||| ||| ||||||||| | |||||| | | || |||||||| ||
Sbjct 9534651 AAAGATGCTGGAACTATTGCTGGACTGAATGTTATGAGGATCATTAATGAGCC 9534599
>seq269
Length=2334884
Score = 87.8 bits (96), Expect = 7e-12
Identities = 152/221 (69%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 451218 ATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAA 451277
|||| || || || ||| ||| ||| || || | |||||||||||||| | || |
Sbjct 1734631 ATAAGGGAGAGACCTAAAGTTTCTTTCCAGAGGAGGTGTCATCTATGGTTCTGATAAAGA 1734572
Query 451278 TGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTC 451337
|||| |||| |||| | || |||| | ||||||||||| || | | ||| |
Sbjct 1734571 TGAAGGAAATTGCAGGAGCCTACCTTGGGAAGACTGTTACTGATGCTGTTGTCATTGTAC 1734512
Query 451338 CCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTT 451397
| || | |||||||| | || | || || || |||||||| ||| |||| ||
Sbjct 1734511 CAGCCTGCTTCAATGACTCTCAGTGTCAGGCTACCAAAGATGCTGGAATCGTTGCCGGCC 1734452
Query 451398 TAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438
| ||||| || |||| || |||||||| || || ||||||
Sbjct 1734451 TCAATGTACTCAGAATCATCAATGAACCAACTGCTGCTGCT 1734411
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975558340260884
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |