Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq327 149 2e-30 seq9 132 2e-25 seq23 127 8e-24 seq125 104 9e-17 seq175 100 1e-15 seq38 96.9 1e-14 seq269 87.8 7e-12 >seq327 Length=991026 Score = 149 bits (164), Expect = 2e-30 Identities = 269/390 (69%), Gaps = 5/390 (1%) Strand=Plus/Minus Query 451217 TATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAA 451276 || ||||| |||| |||| |||| |||||| ||||| || |||||||| || ||||| Sbjct 317790 TACAAAGGAGAAAATAAAGCTTTCTATCCTGAGGAAATCTCTTCTATGGTCCTGACTAAG 317731 Query 451277 ATGAAAGAAACAGCAGAACAATATATTGGTTCTC-CAGTTACTGATGCAGTAATTACTGT 451335 ||||| || || || ||| | | |||| | | | ||||| |||| || || || || Sbjct 317730 ATGAAGGAGACTGCTGAAGCTTTT-TTGGGCCACTCTGTTACCAATGCTGTGATCACCGT 317672 Query 451336 TCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGG 451395 || || |||||||||||| | ||||| || || || || |||||||| |||||| || Sbjct 317671 GCCAGCCTATTTCAATGATTCTCAACGCCAGGCCACCAAGGATGCAGGTGTTATTGCAGG 317612 Query 451396 TTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGG 451455 | ||||| || |||| || |||||||| ||||| |||||| | || ||||| ||| Sbjct 317611 ACTCAATGTGCTGAGAATCATCAATGAACCCACAGCTGCTGCTATTGCCTATGGTTTAGA 317552 Query 451456 AAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCA 451515 || | || || ||| | | | || | || ||| | || ||||| || Sbjct 317551 TAA---AGGAGGTCAAGGAGAGCGACACGTCTTGATCTTCGATCTAGGCGGAGGCACGTT 317495 Query 451516 TGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGA 451575 |||| || | || | || || |||||| | ||||| || ||||| || ||| || Sbjct 317494 TGATGTGTCCATTCTGACTATAGATGATGGGATTTTTGAGGTGAAGGCCACAGCTGGGGA 317435 Query 451576 TACTCATCTAGGAGGTGAAGATATTGATAA 451605 || || || || || || ||| |||| || Sbjct 317434 CACCCACCTGGGTGGGGAGGATTTTGACAA 317405 >seq9 Length=34412642 Score = 132 bits (146), Expect = 2e-25 Identities = 391/598 (65%), Gaps = 15/598 (3%) Strand=Plus/Plus Query 451896 ATGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGTCTT 451955 |||| ||||| || || || |||||||| | ||||| || ||||| || | | || Sbjct 32893084 ATGACATTGTCCTGGTGGGTGGTTCTACCCATATTCCCAAGATTCA-GAAACTTCTTCAG 32893142 Query 451956 CTTATTTTGGA-GGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATAT 452014 | | || | |||||| || || |||||| | ||||||||||| ||| |||| ||| Sbjct 32893143 GATTTCTTCAATGGAAAAGAATTAAACAAGAGCATCAATCCTGATGAGGCTATTGCTTAT 32893202 Query 452015 GGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAATTAGGAGATATT 452074 ||||| || || || ||| | || || | || | | |||||| | |||| | Sbjct 32893203 GGTGCAGCTGTCCAGGCAACCATCTTATCTGGAGAAAAATCTGAAAATGTTCAAGATTTG 32893262 Query 452075 CTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACT 452134 ||| | | ||||| || ||||| |||||||| ||||||| ||||||||| | |||||| Sbjct 32893263 CTGCTCTTGGATGTCACTCCTCTTTCTCTTGGTATTGAAACTGCTGGTGGAGTCATGACT 32893322 Query 452135 AATTTAATTAAACG-AGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGC 452193 | || || | | ||| | |||||| || ||| || | || | || Sbjct 32893323 GTCCTGATCAAGTGCAAATACTACCATTCCTACCAAGCAGATGCAGTCCTTCACAACCTA 32893382 Query 452194 AAGTGATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACG 452253 ||| ||| | || ||||| ||||| || | |||||| || | ||| ||||| Sbjct 32893383 CTCTGACAACTAGCCTGGTGTGCTCATTCAGGTTTATGAAGGTGAGCATGCCATGACCAA 32893442 Query 452254 AGATAATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAAC 452313 ||||| || || || | ||| || || ||| |||||| || | || Sbjct 32893443 GGATAACAACTTGCTTGGCAAGTTTGAATTTACAGGCATACCTCCTGCACCCTGTGGTGT 32893502 Query 452314 TCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGT 452373 |||||| ||||| | || | |||| ||||||| |||||||| ||| || Sbjct 32893503 TCCTCAGATTGAGGTAACTTTTGATATTGATGC----------CTTAATGTCTCTGCTGT 32893552 Query 452374 TGAAAAATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACCGTTTAT 452432 || ||| |||||||| |||| || ||||| || |||||||| || | | || Sbjct 32893553 GGATAAAAGTACTGGAAAA-GAGAACAAGATTACCATCACTAATGACAAGGGCTGCTTGA 32893611 Query 452433 CTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGA 452490 ||||||||| ||||| | ||||| | |||| || | | ||| | ||| ||||| Sbjct 32893612 GTAAAGAAGACATTGAGCATATGGTCCAGAAAGCTGAGATGTACAAAGCTGAAGATGA 32893669 Score = 98.7 bits (108), Expect = 4e-15 Identities = 272/414 (66%), Gaps = 5/414 (1%) Strand=Plus/Plus Query 451192 AGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGA 451251 ||| | |||| | | |||||| | ||||| || || || |||| ||| ||| || || Sbjct 32892386 AGGCAGGCCCAAGGTCCAAGTAGAATATAAGGGAGAGACCAAAAGTTTCTATCCAGAGGA 32892445 Query 451252 AATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCC 451311 | ||||| |||||||| || |||||||| |||| || ||| || |||| | Sbjct 32892446 GGTGTCATCCATGGTTCTGACAAAAATGAAGGAAATTGCTGAAGCCTACCTTGGAAAGAC 32892505 Query 451312 AGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371 ||||| |||| || | ||||| || || || || || ||| || || || || || Sbjct 32892506 TGTTACCAATGCTGTTGTCACTGTACCAGCCTACTTTAACGATCCAG--CGTCAGGCTAC 32892563 Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431 |||||||| ||| |||||||| | |||| || |||| || ||||| || || || Sbjct 32892564 GAAAGATGCTGGAACCATTGCTGGCCTTGATGTACTGAGAATCATCAATGAGCCAACTGC 32892623 Query 451432 AGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGT 451491 | | | | || |||| ||| | || ||| | | |||| |||| | | | Sbjct 32892624 TGTGGTTATTGCTTATG-ACTTAAACAA--AAAGGTTGGTGCTGAAAGAAATGTGCTGAT 32892680 Query 451492 ATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATT 451551 ||||| || || | || ||| |||| || | || | ||||||||||| | || Sbjct 32892681 CTTTGACTTAGGAAGTGGCACTTTTGATTTGTCAATCCTCACTATTGAAGATGGAATCTT 32892740 Query 451552 TGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 ||| || ||| | || ||| || || ||| || | | ||||| |||| || Sbjct 32892741 TGAGGTCAAGTCTACAGCTGGAGACACCCATTTAAGTAGAGAAGACTTTGACAA 32892794 >seq23 Length=24341844 Score = 127 bits (140), Expect = 8e-24 Identities = 443/689 (64%), Gaps = 7/689 (1%) Strand=Plus/Minus Query 450919 TGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTAGA 450978 ||| ||||||||||| ||||||| || ||||| ||||| | || ||||||| || || Sbjct 18524717 TGGCATTGATCTTGGCACCACCTGCTCTTGTGTGGGTGTCTTTCAGCATGGAAAAGTGGA 18524658 Query 450979 AATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACGGATTC 451038 || || ||||| || || || ||||| || || | || |||||| ||| | Sbjct 18524657 GATAATTGCAAAAGATCAGGGCAACCGAACCACCCCAAGCTACGTCGCTTTTACTGATAC 18524598 Query 451039 AGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGCCAAAAACACA 451096 ||| || | | || | || || || ||||| ||| ||| ||| |||||| Sbjct 18524597 CGAACGATTGATTGGTGATGCCGCCAAGAATCAAGTTGCAATG--AATCCCACTAACACA 18524540 Query 451097 GTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAAAAGAG 451156 || | ||||| |||||| | | ||| || | | |||||||| ||| || || Sbjct 18524539 GTTTTCGATGCCAAACGTCTGACTGGACGAAGATTTGATGATGCAGTTGTCCAGTCTGAT 18524480 Query 451157 AAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAAGTAAAT 451216 | || | | | || || || ||| | ||| | |||| | | || ||| | Sbjct 18524479 ATGAAGCATTGGCCGTTTGTGGTGGTGAATGATGCAGGCAGGCCCAAGGTCCAGGTAGAA 18524420 Query 451217 TATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAA 451276 ||||| || || || |||| ||| ||| || | | |||||||||||||| || ||| Sbjct 18524419 TATAAGGGAGAGACCAAAAGTTTCTATCCAGAGGGGGTGTCATCTATGGTTCTGACAAAA 18524360 Query 451277 ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTT 451336 ||||| |||| ||| | || |||| | ||||| |||| || | ||||| Sbjct 18524359 ATGAAGGAAATTACAGGAGCCTACTTTGGAAAGACTGTTACCAATGCTGTTGTCACTGTA 18524300 Query 451337 CCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGT 451396 || || || || || | | || || || || || |||||||| ||| |||||||| Sbjct 18524299 CCAGCCTACTTTAACCACTCTCAGCGTCAGGCTACCAAAGATGCTGGAACCATTGCTGGC 18524240 Query 451397 TTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGA 451456 | ||| || |||| || || | || || || |||||| | || ||||| ||| Sbjct 18524239 CTCGGTGTACTGAGAATCATCAACAAGCCAACTGCTGCTGCTATTGCTTATGGCTTAG-- 18524182 Query 451457 AAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCAT 451516 | ||| | | |||| ||||||| | | ||||| || || || || || | Sbjct 18524181 -ACAGAAAGGTTGGTGCTGAAAGAAATATTCTGATCTTTGACTTAGGAGGTGGCCCTTTT 18524123 Query 451517 GATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGAT 451576 | | || || || | ||||||||||| | ||||| || || | || ||| | Sbjct 18524122 GGTGTGTCAGTCCTCACTATTGAAGATGGAATCTTTGAGGTCAAATCTACAGCTGGATAC 18524063 Query 451577 ACTCATCTAGGAGGTGAAGATATTGATAA 451605 || || |||| || ||||| |||| || Sbjct 18524062 ACCCACTTAGGTGGAGAAGACTTTGACAA 18524034 >seq125 Length=8553959 Score = 104 bits (114), Expect = 9e-17 Identities = 448/699 (64%), Gaps = 17/699 (2%) Strand=Plus/Minus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 ||| |||| ||| ||||||| || |||| || ||||| |||| | ||| ||||||| Sbjct 5857623 GCAGTTGGCATTAATCTTGGCACTACCTACTCCTGTGTGGGTGCCTTCCAGCATGGAAAA 5857564 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACG 451033 || || || || ||| ||| || || | ||| || || | || | |||||| Sbjct 5857563 GTGGAGATAATTGCAGCTGATCAGGGCAACCAAACCACCCCAAGCTATGTCACTTTTACT 5857504 Query 451034 GATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGCCAAAA 451091 ||| | ||| || | || | || | || ||||| ||| ||| ||| | Sbjct 5857503 GATACCGAACGATTGACTGGTGATGCCACCAAGAATCAAGTTGCAATG--AATCCCACTA 5857446 Query 451092 ACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAA 451151 ||||||| | ||||| |||||| | ||||| | | | |||||||| ||| || Sbjct 5857445 ACACAGTGTTCGATGCCAAACGTCTGATTGGATGAAGATTTGATGATGCAGTTGTCCAGT 5857386 Query 451152 AAGAGAAAAA--ATT--CTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATT 451207 || | || ||| | ||| ||| || || ||| | ||| | | || | Sbjct 5857385 CTGATATGAAGCATTGGCCCTTC--ATGGTG--GTGAATGATGCAGGCAGGTCCACGGTC 5857330 Query 451208 CAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATT-TCATCTATGGT 451266 |||||| | |||| || || || ||| ||| || || |||| | ||||||||||| Sbjct 5857329 CAAGTAGAACATAAGGGAGAGACCAAACGTTTCTATC-TGGAGAAGGTGTCATCTATGGT 5857271 Query 451267 TCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGT 451326 ||| || |||||||| ||||| |||||| || || | | ||||| |||| || Sbjct 5857270 TCTGACAAAAATGAAGGAAACTGCAGAAGCCTACCTTAGAAAGACTGTTACCAATGCTGT 5857211 Query 451327 AATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACA 451386 | ||||| | || || || || || | || | || || || |||||||| ||| Sbjct 5857210 TGTCACTGTATCAGCCTACTTTAACGACTCTCAGCATCAGGCTACCAAAGATGCTGGAAC 5857151 Query 451387 TATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATA 451446 ||||||||| | ||||| || |||| | || || || || || |||||| | || Sbjct 5857150 TATTGCTGGCCTCAATGTACTGAGAATCACCAACGAGCCAACTGCTGCTGCTATTCTTTA 5857091 Query 451447 TGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGG 451506 ||| ||| || ||| | | |||| |||| | | | ||| | || || || Sbjct 5857090 TGGCTTAGACAA---AAAGGTTGGTGCTGAAAGAAATGTGCTGATTTTTTACTTAGGAGG 5857034 Query 451507 AGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAAC 451566 || ||| |||| || | || || ||||||||||| | || || || || | || Sbjct 5857033 TGGCACTTTTGATGTGTCAATCCTCTCTATTGAAGATGGAATCTTCGAGGTCAAATCTAC 5856974 Query 451567 CAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 ||| || || || |||| || ||||| |||| || Sbjct 5856973 AGTTGGAGACACCCACTTAGGTGGAGAAGACTTTGACAA 5856935 >seq175 Length=5584636 Score = 100 bits (110), Expect = 1e-15 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || ||||| || | || || || || |||||||| | |||| | || Sbjct 1836299 ATGCACATTTTTGTAAAAACCCTAATGGGGAAGACCATCACTCTTGAGGATGAACCCTCA 1836358 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | ||| || || || ||||| ||||||||| ||||||||||| Sbjct 1836359 GATACAATAGAAAATGTAAAAGCCAAGATCCAGGATAAAGAAGGAATTTCTCCTGATCAA 1836418 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || | | || || | || ||| |||| ||||||||| |||||| || || || Sbjct 1836419 CAGAGACTGATCTTTGCTGGCAAAAAACTGGAAGATGGACCTACTTTGTTTGACTACAAC 1836478 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 ||| | ||||| | || ||||| Sbjct 1836479 ATTCAAAAGGAGTCTACTCTTCA 1836501 >seq38 Length=20210872 Score = 96.9 bits (106), Expect = 1e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| | ||||| ||||||| || || |||||||||||||| || || |||||||| Sbjct 9534711 GTTACCCACGCAGTTGTTACTGTACCAGCCTATTTCAATGATGCCCAGCGTCAAGCAACC 9534652 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| ||| ||||||||| | |||||| | | || |||||||| || Sbjct 9534651 AAAGATGCTGGAACTATTGCTGGACTGAATGTTATGAGGATCATTAATGAGCC 9534599 >seq269 Length=2334884 Score = 87.8 bits (96), Expect = 7e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 451218 ATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAA 451277 |||| || || || ||| ||| ||| || || | |||||||||||||| | || | Sbjct 1734631 ATAAGGGAGAGACCTAAAGTTTCTTTCCAGAGGAGGTGTCATCTATGGTTCTGATAAAGA 1734572 Query 451278 TGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTC 451337 |||| |||| |||| | || |||| | ||||||||||| || | | ||| | Sbjct 1734571 TGAAGGAAATTGCAGGAGCCTACCTTGGGAAGACTGTTACTGATGCTGTTGTCATTGTAC 1734512 Query 451338 CCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTT 451397 | || | |||||||| | || | || || || |||||||| ||| |||| || Sbjct 1734511 CAGCCTGCTTCAATGACTCTCAGTGTCAGGCTACCAAAGATGCTGGAATCGTTGCCGGCC 1734452 Query 451398 TAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCT 451438 | ||||| || |||| || |||||||| || || |||||| Sbjct 1734451 TCAATGTACTCAGAATCATCAATGAACCAACTGCTGCTGCT 1734411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975558340260884