Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq345 93.3 5e-14
seq180 93.3 5e-14
seq115 93.3 5e-14
seq45 93.3 5e-14
seq40 93.3 5e-14
seq48 86.0 7e-12
>seq345
Length=805940
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 83275 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 83333
Score = 89.7 bits (98), Expect = 6e-13
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
|||||||| |||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 12683 TAGCTCAGCTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 12625
Score = 84.2 bits (92), Expect = 3e-11
Identities = 54/59 (92%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||| | ||| ||
Sbjct 588359 TAGCTCAGTTGGTTAGAGCGTGGTGCTGATAACGCCAAGGTCGCGGGTTCAATCCCTGT 588301
>seq180
Length=5441683
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 680936 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 680994
Score = 89.7 bits (98), Expect = 6e-13
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
|||||||||||| |||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 669624 TAGCTCAGTTGGGTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 669682
>seq115
Length=9545123
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 9194813 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 9194871
>seq45
Length=18494253
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 9746652 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 9746594
>seq40
Length=19935044
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 11333621 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 11333679
Score = 93.3 bits (102), Expect = 5e-14
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775
||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 11370061 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 11370003
>seq48
Length=17931790
Score = 86.0 bits (94), Expect = 7e-12
Identities = 180/266 (68%), Gaps = 12/266 (5%)
Strand=Plus/Plus
Query 158473 GGATGTTATGGGCGTGTGGCACCTCGTTCGGGTTTGGCTGTGAAGCACTGTATCAACGTT 158532
|| |||||||| | | ||| || ||||| ||||||||||| || |||| || | ||
Sbjct 14690876 GGGTGTTATGGAAGAGAGGCTCCACGTTCTGGTTTGGCTGTAAAACACTTCATAGATGTA 14690935
Query 158533 GGTGCGGGGGTCATCGATCCTGATTATACTGGAGAAGTCAAAGTCGTTCTCTTCAATCAT 158592
|| | || ||||| ||| |||||||| | | | || | || || || ||| |
Sbjct 14690936 GGAGATGGTGTCATAGATGAAGATTATACAGCAAATGTTGCTGCTGTGCTGTTTAATTTT 14690995
Query 158593 GG---AGACAAGGACTTTGAGGTTAAGAAGGGTGATCGCATCGCACAGCTTGTTCTAGAA 158649
|| ||| ||| ||||| || || ||||||||||| || ||||||||| || |||
Sbjct 14690996 GGCAAAGAAAAG---TTTGAAGTCAAAAAGGGTGATCGAATTGCACAGCTTATTTGTGAA 14691052
Query 158650 CG---TTGTGAGACGCCACCCATTGAGGAAATTAACATCGTCGAAGATACGGAGAGGGGT 158706
|| || | | ||| || |||||| | | | | || || || | ||||||
Sbjct 14691053 CGAATTTTTTA---TCCAGAAATAGAGGAAGTCCAAGTTTTAGATGACACCAAAAGGGGT 14691109
Query 158707 TCGGGTGGATTTGGTTCTACTGGCAA 158732
|| || || |||||||| ||||| ||
Sbjct 14691110 TCAGGAGGTTTTGGTTCCACTGGAAA 14691135
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588929448809400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |