Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq102 87.8 2e-12 seq88 86.0 7e-12 >seq102 Length=10627846 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 106446 TGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTG 106505 |||||||| | ||||| | || ||||| || ||||| || |||||| || | Sbjct 1346561 TGACATACATATTCAGGGCCAGGGAAGCCAAGTTACAAACTGCAACCTCATCTTTGCTAG 1346502 Query 106506 TGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGT 106565 | ||||||| |||||||| |||| |||| | || ||||| |||| |||| ||| Sbjct 1346501 TATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCCGGT 1346442 Query 106566 TACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTG 106625 | ||||| || | | |||||||||||||||||| | || || ||||| | ||| | Sbjct 1346441 TGCTCTTCCAATTATAGGAATCCTTGTAGAGCATGTACAGAGTACCTGTCTCTGCCTGAG 1346382 Query 106626 ACT 106628 ||| Sbjct 1346381 ACT 1346379 >seq88 Length=11737398 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| || || ||||||| |||||||| |||| |||| | || || || || Sbjct 370047 CTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTTCC 370106 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || |||| ||||| ||||| || || | |||||||||||||||||| || || || Sbjct 370107 CAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCCTTGTAGAGCATGTACGGGGTACC 370166 Query 106612 CGTCTCCGTCTGTGACT 106628 ||||| ||||| |||| Sbjct 370167 TGTCTCTGTCTGAGACT 370183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589934169392520