Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq131 156 9e-33 seq40 145 2e-29 seq209 116 8e-21 seq86 86.0 1e-11 >seq131 Length=8015323 Score = 156 bits (172), Expect = 9e-33 Identities = 163/213 (77%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||||||||| || || ||||| || | || || | |||||||| Sbjct 2518433 ACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGTCCATCTTCC 2518492 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| | | || ||||| |||||||||||||| |||||||| Sbjct 2518493 AGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGG 2518552 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || ||| |||||| |||||||||||||| ||| || ||||||||||| | ||| Sbjct 2518553 ATCTTTGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCTACTTCAAGGGTGATTGTC 2518609 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || ||||| || || ||||| | |||||| Sbjct 2518610 TTACCGGTCAAGGTCTTCACGAAGATCTGCATT 2518642 Score = 96.9 bits (106), Expect = 8e-15 Identities = 112/150 (75%), Gaps = 6/150 (4%) Strand=Plus/Plus Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 || || || || ||||| | | || ||||| ||||| |||||||| |||||||| || Sbjct 2520078 TGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATC 2520137 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTT 195111 ||| ||||||||||||||||||||| ||| ||||| |||||||| | || || Sbjct 2520138 TTTGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCCACCTCAAGGGTGATGGTTTTA 2520194 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || || ||||| || || | |||||| Sbjct 2520195 CCCGTTAAGGTTTTCACAAAGATCTGCATT 2520224 >seq40 Length=19935044 Score = 145 bits (160), Expect = 2e-29 Identities = 157/207 (76%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || ||||| || || || ||||| || | |||||| | |||||||| |||||| Sbjct 1219241 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 1219182 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || ||||| ||||| || | || ||||| ||||| ||||||||||| || || || || Sbjct 1219181 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTA 1219122 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCT 195114 ||| |||||||| |||||||| ||| |||||| || ||||| | |||||||| Sbjct 1219121 GCCTTTACGTTCTCGATGGTGTC---ACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCC 1219065 Query 195115 GTCAAAGTTTTTACGAACACTTGCATT 195141 || | || |||||||| | ||||||| Sbjct 1219064 GTTAGGGTCTTTACGAAAATTTGCATT 1219038 Score = 129 bits (142), Expect = 1e-24 Identities = 118/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || ||||| |||||||| || |||||||| || | |||||| | |||||||| Sbjct 1219679 ACAAGATGCAGAGTTGACTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCTTCC 1219620 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| ||||| ||||| || | || ||||| ||||| ||||||||||| || || Sbjct 1219619 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGG 1219560 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || || ||| |||||||| ||||| || Sbjct 1219559 ATCTTGGCCTTCACGTTCTCGATGGTATC 1219531 >seq209 Length=4208363 Score = 116 bits (128), Expect = 8e-21 Identities = 154/211 (73%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||| |||| ||||| |||||| | || ||||| || | ||| | | |||||||| Sbjct 4009458 ACACGGTGCAGAGTTGACTCT----GGATGTTGTAGTCAGAAAGTG--CGACCATCTTC- 4009510 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| ||||| ||||| || | || ||||| ||||| ||||||||||| || || Sbjct 4009511 AGGTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGG 4009570 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 | || ||| | |||||||||||||||| |||||| || ||||| | ||||| Sbjct 4009571 AGCTTAGCCTTTATGTTCTCAATGGTGTCCCTGGGTTCCACCTCCAGGGTGATGGTCTTG 4009630 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || |||| | |||| ||| | |||||||| Sbjct 4009631 CCAGTCAGGATCTTTATGAAGATTTGCATTT 4009661 >seq86 Length=11983830 Score = 86.0 bits (94), Expect = 1e-11 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 125524 CTTCCAAAGAAACACGGCAGGGGAGGACAATCTGCTTTGCGTTTTGAGAGACTTCGAAAA 125583 ||||||||||||||||| || ||||| || ||||| |||||||||| | | ||| Sbjct 4365775 CTTCCAAAGAAACACGGTAGAGGAGGTCAGTCTGCCTTGCGTTTTGCCCGTTTAAGAATG 4365716 Query 125584 GAAAAGAGACACAACTATTTGAGGAAAGTCGCAGAGAATGCAACTCA-ATGTTTTTTGCA 125642 |||||| |||| || ||| | ||||||| || |||| ||| || ||||| || | Sbjct 4365715 GAAAAGCGACATAATTATGTTCGGAAAGTAGCTGAGACTGCTGTGCAGCTGTTTATTTCT 4365656 Query 125643 AGACAACAAGTGCAACGTCATTGGGATTGTCATTGCTGGATCGGCAGAGTTCAAAACAAA 125702 | | ||||| || || ||| | || | |||||||| || || || ||||| | Sbjct 4365655 GGGGACAAAGTG-AATGTGGCTGGTCTCGTTTTAGCTGGATCAGCTGACTTTAAAACCGA 4365597 Query 125703 GCTTCTGGAATCTGACCTTTTCGACCAAAGACTTCGAACAAAAGTCTTG 125751 || ||||||| | || || ||||| | | | ||||||| ||| Sbjct 4365596 ACTAAGTCAATCTGATATGTTTGATCAAAGGTTGCAATCAAAAGTTTTG 4365548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109391717081741