Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq131 156 9e-33
seq40 145 2e-29
seq209 116 8e-21
seq86 86.0 1e-11
>seq131
Length=8015323
Score = 156 bits (172), Expect = 9e-33
Identities = 163/213 (77%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || ||||||||||| || || ||||| || | || || | ||||||||
Sbjct 2518433 ACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGTCCATCTTCC 2518492
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| | | || ||||| |||||||||||||| ||||||||
Sbjct 2518493 AGCTGCTTGCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTCTTGG 2518552
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| ||| |||||| |||||||||||||| ||| || ||||||||||| | |||
Sbjct 2518553 ATCTTTGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCTACTTCAAGGGTGATTGTC 2518609
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141
|| || ||||| || || ||||| | ||||||
Sbjct 2518610 TTACCGGTCAAGGTCTTCACGAAGATCTGCATT 2518642
Score = 96.9 bits (106), Expect = 8e-15
Identities = 112/150 (75%), Gaps = 6/150 (4%)
Strand=Plus/Plus
Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054
|| || || || ||||| | | || ||||| ||||| |||||||| |||||||| ||
Sbjct 2520078 TGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATC 2520137
Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTT 195111
||| ||||||||||||||||||||| ||| ||||| |||||||| | || ||
Sbjct 2520138 TTTGCCTTGACGTTCTCAATGGTGTC---ACTGGGCTCCACCTCAAGGGTGATGGTTTTA 2520194
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141
|| || || ||||| || || | ||||||
Sbjct 2520195 CCCGTTAAGGTTTTCACAAAGATCTGCATT 2520224
>seq40
Length=19935044
Score = 145 bits (160), Expect = 2e-29
Identities = 157/207 (76%), Gaps = 6/207 (3%)
Strand=Plus/Minus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|| || || ||||| || || || ||||| || | |||||| | |||||||| ||||||
Sbjct 1219241 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 1219182
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| ||||| ||||| || | || ||||| ||||| ||||||||||| || || || ||
Sbjct 1219181 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTA 1219122
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCT 195114
||| |||||||| |||||||| ||| |||||| || ||||| | ||||||||
Sbjct 1219121 GCCTTTACGTTCTCGATGGTGTC---ACTGGGTTCCACCTCCAGGGTGATGGTCTTTCCC 1219065
Query 195115 GTCAAAGTTTTTACGAACACTTGCATT 195141
|| | || |||||||| | |||||||
Sbjct 1219064 GTTAGGGTCTTTACGAAAATTTGCATT 1219038
Score = 129 bits (142), Expect = 1e-24
Identities = 118/149 (79%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| || ||||| |||||||| || |||||||| || | |||||| | ||||||||
Sbjct 1219679 ACAAGATGCAGAGTTGACTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCTTCC 1219620
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| ||||| ||||| || | || ||||| ||||| ||||||||||| || ||
Sbjct 1219619 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGG 1219560
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC 195080
|| || ||| |||||||| ||||| ||
Sbjct 1219559 ATCTTGGCCTTCACGTTCTCGATGGTATC 1219531
>seq209
Length=4208363
Score = 116 bits (128), Expect = 8e-21
Identities = 154/211 (73%), Gaps = 7/211 (3%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||| |||| ||||| |||||| | || ||||| || | ||| | | ||||||||
Sbjct 4009458 ACACGGTGCAGAGTTGACTCT----GGATGTTGTAGTCAGAAAGTG--CGACCATCTTC- 4009510
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|| ||||| ||||| ||||| || | || ||||| ||||| ||||||||||| || ||
Sbjct 4009511 AGGTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGG 4009570
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
| || ||| | |||||||||||||||| |||||| || ||||| | |||||
Sbjct 4009571 AGCTTAGCCTTTATGTTCTCAATGGTGTCCCTGGGTTCCACCTCCAGGGTGATGGTCTTG 4009630
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATTT 195142
|| |||| | |||| ||| | ||||||||
Sbjct 4009631 CCAGTCAGGATCTTTATGAAGATTTGCATTT 4009661
>seq86
Length=11983830
Score = 86.0 bits (94), Expect = 1e-11
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 125524 CTTCCAAAGAAACACGGCAGGGGAGGACAATCTGCTTTGCGTTTTGAGAGACTTCGAAAA 125583
||||||||||||||||| || ||||| || ||||| |||||||||| | | |||
Sbjct 4365775 CTTCCAAAGAAACACGGTAGAGGAGGTCAGTCTGCCTTGCGTTTTGCCCGTTTAAGAATG 4365716
Query 125584 GAAAAGAGACACAACTATTTGAGGAAAGTCGCAGAGAATGCAACTCA-ATGTTTTTTGCA 125642
|||||| |||| || ||| | ||||||| || |||| ||| || ||||| || |
Sbjct 4365715 GAAAAGCGACATAATTATGTTCGGAAAGTAGCTGAGACTGCTGTGCAGCTGTTTATTTCT 4365656
Query 125643 AGACAACAAGTGCAACGTCATTGGGATTGTCATTGCTGGATCGGCAGAGTTCAAAACAAA 125702
| | ||||| || || ||| | || | |||||||| || || || ||||| |
Sbjct 4365655 GGGGACAAAGTG-AATGTGGCTGGTCTCGTTTTAGCTGGATCAGCTGACTTTAAAACCGA 4365597
Query 125703 GCTTCTGGAATCTGACCTTTTCGACCAAAGACTTCGAACAAAAGTCTTG 125751
|| ||||||| | || || ||||| | | | ||||||| |||
Sbjct 4365596 ACTAAGTCAATCTGATATGTTTGATCAAAGGTTGCAATCAAAAGTTTTG 4365548
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109391717081741
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |