Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_016448.1
Length=196691
Score E
Sequences producing significant alignments: (Bits) Value
seq288 111 2e-19
>seq288
Length=1826051
Score = 111 bits (122), Expect = 2e-19
Identities = 219/321 (68%), Gaps = 5/321 (2%)
Strand=Plus/Plus
Query 1885 AAACCAGCTCCACCCCGCT---GATCGTGAATGGGGTGCTCGGGGAGTCCGTAACACTGC 1941
||| |||||| | ||| || || ||||||||||| || || ||||| ||||| || |
Sbjct 885921 AAAACAGCTCAAACCCACTACTGACAGTGAATGGGGTTCTAGGAGAGTCGGTAACTCTTC 885980
Query 1942 CCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGCACCT 2001
||||| || ||| || || |||||||| ||||||||||||||| |||| || | |
Sbjct 885981 CCCTG-AAGTTCGTGCAGGAGAGAAGATTGAGTCCATCACCTGGCTTCACAATGGAGCAT 886039
Query 2002 CCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAATCCGA 2061
| ||| |||| || || || | || | || ||||| | || | || |
Sbjct 886040 CTATCACCTTCATAAAGCCAAGTGAAACAGGAAGTCTACAAATCCATGTGACTGACCCAA 886099
Query 2062 AACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCTAGAGA 2121
||| | ||| ||| ||||| || ||||||||| | || || |||||||| |
Sbjct 886100 AACAGAAAGAGCAACTGAACTTTACCTCATCCTACTCCTTGCAGCTCAGCAACCTGACAA 886159
Query 2122 TGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAACGTTTCCA 2181
|||||||| | | || ||||| |||| |||| ||| | | || | || | | ||
Sbjct 886160 TGGAAGACTCAGAATCTTACAGCGCCCAGATGGCCT-CAAAACTTCTGTAACAATATCGT 886218
Query 2182 GCTACACGCTGAGGATCTTCC 2202
||||| |||||||||||||
Sbjct 886219 ATTACACACTGAGGATCTTCC 886239
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629233463029080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |