Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq288 111 2e-19 >seq288 Length=1826051 Score = 111 bits (122), Expect = 2e-19 Identities = 219/321 (68%), Gaps = 5/321 (2%) Strand=Plus/Plus Query 1885 AAACCAGCTCCACCCCGCT---GATCGTGAATGGGGTGCTCGGGGAGTCCGTAACACTGC 1941 ||| |||||| | ||| || || ||||||||||| || || ||||| ||||| || | Sbjct 885921 AAAACAGCTCAAACCCACTACTGACAGTGAATGGGGTTCTAGGAGAGTCGGTAACTCTTC 885980 Query 1942 CCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGCACCT 2001 ||||| || ||| || || |||||||| ||||||||||||||| |||| || | | Sbjct 885981 CCCTG-AAGTTCGTGCAGGAGAGAAGATTGAGTCCATCACCTGGCTTCACAATGGAGCAT 886039 Query 2002 CCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAATCCGA 2061 | ||| |||| || || || | || | || ||||| | || | || | Sbjct 886040 CTATCACCTTCATAAAGCCAAGTGAAACAGGAAGTCTACAAATCCATGTGACTGACCCAA 886099 Query 2062 AACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCTAGAGA 2121 ||| | ||| ||| ||||| || ||||||||| | || || |||||||| | Sbjct 886100 AACAGAAAGAGCAACTGAACTTTACCTCATCCTACTCCTTGCAGCTCAGCAACCTGACAA 886159 Query 2122 TGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAACGTTTCCA 2181 |||||||| | | || ||||| |||| |||| ||| | | || | || | | || Sbjct 886160 TGGAAGACTCAGAATCTTACAGCGCCCAGATGGCCT-CAAAACTTCTGTAACAATATCGT 886218 Query 2182 GCTACACGCTGAGGATCTTCC 2202 ||||| ||||||||||||| Sbjct 886219 ATTACACACTGAGGATCTTCC 886239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629233463029080