Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq87 208 9e-49
seq23 118 1e-21
seq9 111 2e-19
>seq87
Length=11743621
Score = 208 bits (230), Expect = 9e-49
Identities = 332/470 (71%), Gaps = 5/470 (1%)
Strand=Plus/Plus
Query 37163 TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATT 37222
||| ||| || || | ||| ||||| ||||||| |||||||| || || ||||||||
Sbjct 8842432 TTTGAACGCTATGCAGGTAAAGTCACAGTGTAAACTCTCATCTCTGCTAATGAATTCATT 8842491
Query 37223 AGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGA 37282
||| | || | || |||||||| |||| ||| || | || ||||| | |||||||||
Sbjct 8842492 GGAACATGTGAGGCCAGGCATTAATCCTCGTTTCTTGAGTCAGAATATGGATGCAAAAGA 8842551
Query 37283 TCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA 37342
||||||||||| || ||||| | || ||||| |||||| || |||| | || |
Sbjct 8842552 ACCAGAAAAGAAGATTCCTTCTATTGGGGCAAAGGCTACATCACACTTACCATAGGTAGC 8842611
Query 37343 ACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGT 37402
| || ||||| | | |||||||||||| || ||||| |||||
Sbjct 8842612 TTCTTTTTCCCCGATCCAATGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGT 8842671
Query 37403 TTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAG 37462
| |||| || || |||||||| | |||| | |||| | || ||||| ||| | ||
Sbjct 8842672 T-CAATGGCATTGAAGAGAAACTCCCTTTCCTTGGAATCTTTAATGTAAGTGTCAGTAAG 8842730
Query 37463 TAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCT 37522
| | | ||||||||||| || || ||||| || || || || || ||||| | ||| |
Sbjct 8842731 GAGATTGTACATTTCAGAATGTATGTTTTCCATTGCAATTTGGAAGCCATAGAGACAGCA 8842790
Query 37523 AGCTTCAGATAAT-TGAACATCGTTAAAAAACCTCTT-AGCTAAGTTTTCATTAACTATC 37580
||||| | |||| ||||| | | ||| | | ||| ||||||||||| | |||
Sbjct 8842791 GGCTTCTG-TAATCTGAACTTGTTGGCTAAATCGCACCAGC-AAGTTTTCATTCATTATG 8842848
Query 37581 CCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTC 37630
||||| || |||||||||||||| ||||||| | | |||||| ||||||
Sbjct 8842849 CCATCGCTTGCTGCAAAGAAAGCCAGAACATGTGATGTAAAATATCTTTC 8842898
>seq23
Length=24341844
Score = 118 bits (130), Expect = 1e-21
Identities = 103/128 (80%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259
|||||||| || || | |||||| ||||| || | || |||||||| |||| ||| ||
Sbjct 8996045 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGCCCAGGCATTAATCCTCGTTTCTTG 8996104
Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319
| ||| ||||| | ||||||||| ||||||||||| || ||||| || |||||||| |||
Sbjct 8996105 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACGGCTGCAAAGGCT 8996164
Query 37320 ACAAGACG 37327
|||| |||
Sbjct 8996165 ACAACACG 8996172
Score = 82.4 bits (90), Expect = 9e-11
Identities = 76/94 (81%), Gaps = 2/94 (2%)
Strand=Plus/Plus
Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930
||| |||||||| | ||||| || || |||| |||| || || || || ||||| ||||
Sbjct 8994302 CATCACTCCCATCCTCTGATACTCGCCCACTC-TCTTCTCAAAGAAGTTAGTCTTCCCTT 8994360
Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964
||||||| ||||| |||||||| ||||| |||||
Sbjct 8994361 CTAGTGAAATATTCTCCATAAAGTCAAACGGATT 8994394
>seq9
Length=34412642
Score = 111 bits (122), Expect = 2e-19
Identities = 99/124 (80%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257
|||||||||| || || | |||||| ||||| || | ||| ||||| | |||||| || |
Sbjct 15801834 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGACCTCTCTTCT 15801775
Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317
| | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| |
Sbjct 15801774 TTAGCCAGAATATAGCAGCAAAAGATCCGGAGAAGAAAATCCCTTCTACAGCAGCAAAGG 15801715
Query 37318 CTAC 37321
||||
Sbjct 15801714 CTAC 15801711
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592269984760920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |