Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq87 208 9e-49 seq23 118 1e-21 seq9 111 2e-19 >seq87 Length=11743621 Score = 208 bits (230), Expect = 9e-49 Identities = 332/470 (71%), Gaps = 5/470 (1%) Strand=Plus/Plus Query 37163 TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATT 37222 ||| ||| || || | ||| ||||| ||||||| |||||||| || || |||||||| Sbjct 8842432 TTTGAACGCTATGCAGGTAAAGTCACAGTGTAAACTCTCATCTCTGCTAATGAATTCATT 8842491 Query 37223 AGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGA 37282 ||| | || | || |||||||| |||| ||| || | || ||||| | ||||||||| Sbjct 8842492 GGAACATGTGAGGCCAGGCATTAATCCTCGTTTCTTGAGTCAGAATATGGATGCAAAAGA 8842551 Query 37283 TCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA 37342 ||||||||||| || ||||| | || ||||| |||||| || |||| | || | Sbjct 8842552 ACCAGAAAAGAAGATTCCTTCTATTGGGGCAAAGGCTACATCACACTTACCATAGGTAGC 8842611 Query 37343 ACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGT 37402 | || ||||| | | |||||||||||| || ||||| ||||| Sbjct 8842612 TTCTTTTTCCCCGATCCAATGCAAGGCCCAATCTGCCTTCTTCTTTACACAAGGCATTGT 8842671 Query 37403 TTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAG 37462 | |||| || || |||||||| | |||| | |||| | || ||||| ||| | || Sbjct 8842672 T-CAATGGCATTGAAGAGAAACTCCCTTTCCTTGGAATCTTTAATGTAAGTGTCAGTAAG 8842730 Query 37463 TAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCT 37522 | | | ||||||||||| || || ||||| || || || || || ||||| | ||| | Sbjct 8842731 GAGATTGTACATTTCAGAATGTATGTTTTCCATTGCAATTTGGAAGCCATAGAGACAGCA 8842790 Query 37523 AGCTTCAGATAAT-TGAACATCGTTAAAAAACCTCTT-AGCTAAGTTTTCATTAACTATC 37580 ||||| | |||| ||||| | | ||| | | ||| ||||||||||| | ||| Sbjct 8842791 GGCTTCTG-TAATCTGAACTTGTTGGCTAAATCGCACCAGC-AAGTTTTCATTCATTATG 8842848 Query 37581 CCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTC 37630 ||||| || |||||||||||||| ||||||| | | |||||| |||||| Sbjct 8842849 CCATCGCTTGCTGCAAAGAAAGCCAGAACATGTGATGTAAAATATCTTTC 8842898 >seq23 Length=24341844 Score = 118 bits (130), Expect = 1e-21 Identities = 103/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||| ||||| || | || |||||||| |||| ||| || Sbjct 8996045 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGCCCAGGCATTAATCCTCGTTTCTTG 8996104 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||| | ||||||||| ||||||||||| || ||||| || |||||||| ||| Sbjct 8996105 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACGGCTGCAAAGGCT 8996164 Query 37320 ACAAGACG 37327 |||| ||| Sbjct 8996165 ACAACACG 8996172 Score = 82.4 bits (90), Expect = 9e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || ||||| |||| Sbjct 8994302 CATCACTCCCATCCTCTGATACTCGCCCACTC-TCTTCTCAAAGAAGTTAGTCTTCCCTT 8994360 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 ||||||| ||||| |||||||| ||||| ||||| Sbjct 8994361 CTAGTGAAATATTCTCCATAAAGTCAAACGGATT 8994394 >seq9 Length=34412642 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| ||||| || | ||| ||||| | |||||| || | Sbjct 15801834 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTAAGTCCAGGCATAAGACCTCTCTTCT 15801775 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| | Sbjct 15801774 TTAGCCAGAATATAGCAGCAAAAGATCCGGAGAAGAAAATCCCTTCTACAGCAGCAAAGG 15801715 Query 37318 CTAC 37321 |||| Sbjct 15801714 CTAC 15801711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592269984760920