Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202 012-01-23] 6,323 sequences; 3,103,808,406 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq4 187 2e-42 seq16 159 3e-34 seq256 136 3e-27 seq29 96.9 3e-15 >seq4 Length=36583390 Score = 187 bits (206), Expect = 2e-42 Identities = 425/631 (67%), Gaps = 19/631 (3%) Strand=Plus/Minus Query 29765 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 29824 |||| || ||||| || || |||| ||||||| ||||| || || ||||| | || Sbjct 19718322 TGGGGAAAGGTCTTGGTTCTCTCTGGAGCTGAACTTTCAGGGGCTCAGTGTGATTCTGGA 19718263 Query 29825 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884 | | | || ||||||| || | |||| || | || | || || ||| ||| | Sbjct 19718262 AAATAGGTGCATCTCCCAAAGTATATTCAAAGTCACGTGGCTTCAGGCCTATGATGTGTG 19718203 Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 29944 | | |||| |||| | | |||||||| ||| | || |||||||| || ||||||| Sbjct 19718202 CGAC--TGTAGGTGAACTGGGCATAGCTGGCAATGGTGAAAGGTACCCCCAGGCCCATGT 19718145 Query 29945 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30004 || |||||||| || ||||| || | ||||| | || ||| | ||||| || | Sbjct 19718144 ATCCTGACCTCTGCTACAGCTGGCAGGTCAGCTCACTGTTCACCACAGAGAACTGGCAAA 19718085 Query 30005 TGGTGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAGTCTTTGGGG-TTCCAGGCGCACA 30061 || ||||| |||| || ||| | |||| ||| | ||| || ||| | ||||||| Sbjct 19718084 GGGCATGGCAGGGAGTTAGCGCCGTCTGAGG---AAGGCCTTGTGGATTCTAAGCGCACA 19718028 Query 30062 CGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGAT 30121 |||||| | |||| | | |||||| | |||| ||| | ||||||||||| | Sbjct 19718027 TGATGATTCTTCTGTGT-CAGGGTTGGTTTTGATTGTGTCAGTAACCTTTTGCAGCTGGT 19717969 Query 30122 CCACCCC----CATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGC 30177 | || || | | | | | |||| ||| || | || ||||| | |||||| Sbjct 19717968 CTACTCCTTGACCTACACCA----TCTGAATTCAGATCTTTATATTCTGCCTCAAAATGC 19717913 Query 30178 CTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTC 30237 |||||||| || || || || || || ||||| ||||| | | ||| ||| Sbjct 19717912 CTCCACTGAAAGCCATAAACTGGGCCTGAATCTCCTTCTTCTCAGGTGAAGAATCCCAGG 19717853 Query 30238 TTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGC 30297 ||||||||||||||| ||| || |||| ||||||||||| || ||||| || || Sbjct 19717852 CTGTCCAAAAAGTCTCGGGACCCACTGGCATCCCAGATCTTCACTCCCTTGGAAGACAGT 19717793 Query 30298 TCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAA 30357 ||| | | || ||||| ||| ||| |||||||| ||| ||||| || ||| | Sbjct 19717792 TCTCTAGCATTGGTGGATCCT-TGATACGCCACAGCAACTCTTCCACAAC-ACCTGTGCA 19717735 Query 30358 AAGACCCTCTTGGTCGTGAGGAGGGGAAACT 30388 || || | |||||| || || || ||||||| Sbjct 19717734 AACACACGCTTGGTTGTCAGCAGAGGAAACT 19717704 >seq16 Length=28134011 Score = 159 bits (176), Expect = 3e-34 Identities = 352/523 (67%), Gaps = 10/523 (2%) Strand=Plus/Plus Query 29765 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 29824 |||| || ||||| || || | ||||||| ||||| || || | ||||| ||||| Sbjct 9569086 TGGGGAAAGGTCTTGGTTCTCGAGTGAGCTGAACTTTCAGGGGCTCAATGTGATTCAGGT 9569145 Query 29825 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884 | | || || ||||||| || || ||||| || || || | || | | | ||| Sbjct 9569146 AAATATGTGCATCTCCCAAAGTATGCACAAAGTCACCTGGCTTCAGGCTCATTATGTGTT 9569205 Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 29944 | ||||| ||||| || | ||||||| ||||| || || ||||| || ||||||| Sbjct 9569206 TGGTTATGTAGGTGAGCAGGTGGAAGCTGGCCATGTTGAAAGGCACCCC-AGGCCCATGT 9569264 Query 29945 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30004 | || ||| ||||||| ||||| || || ||||| | || ||| ||| |||| || | Sbjct 9569265 CTCCTGACTTCTGGTA-AGCTGGCAGGACAGCTCACTGT---TCATGTAGGACTGGCAAA 9569320 Query 30005 TGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGA 30064 | ||||| ||||| | || | || | |||||| || ||||| ||| || Sbjct 9569321 GGACTTGGCAAGGAGGCATCACCGTCAGAGGAAGGTCTTTTGGATTCCAATAACACGTGA 9569380 Query 30065 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 30124 |||| | || || || |||||| | |||| | | | | ||||| |||| || | Sbjct 9569381 TGATTCTTCTATCCTCAGGGTTGCTTTTGATTGTGGCAATAAC--TTTGCTGCTGGTCTA 9569438 Query 30125 CCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACT 30184 | || || || || | || |||| || | | ||||| || ||||| ||||||| Sbjct 9569439 CTCCTTGGCCTGAATAATATGAATTCATATCTTTATGTTCTGCCCCAAAATGTCTCCACT 9569498 Query 30185 GGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCA 30244 | || || || || || |||| ||| | ||| |||| ||| ||| | |||| Sbjct 9569499 GAAAGCCATAAACTGGGCCCAAATCTTCTTCTAGCCTGGA---GAATCCCAGGCTTTCCA 9569555 Query 30245 AAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTT 30287 |||||||| ||| || ||| | ||||||||||| || ||||| Sbjct 9569556 CAAAGTCTCGGGACCCATTGACATCCCAGATCTTCACTCCCTT 9569598 >seq256 Length=2651488 Score = 136 bits (150), Expect = 3e-27 Identities = 125/158 (79%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 29872 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 29931 ||||||| ||| || |||||||| ||||| || | ||||||||||||||| || || ||| Sbjct 779449 CCGGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACC 779390 Query 29932 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACG 29991 || || |||||||| || ||||||||||| ||||| || || ||||| || | ||| Sbjct 779389 CCCAGGCCCATGTCGCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACCACA 779330 Query 29992 TAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCAT 30029 || ||||| || | || |||||| ||||| || ||||| Sbjct 779329 TAGAACTGGCAAAGGGCGTGGCAGGGAGGCAGCGCCAT 779292 Score = 89.7 bits (98), Expect = 4e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 30149 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30208 |||| || | || ||||| || |||||||||||||| || || || || || || | | Sbjct 775826 TCATATCTTTATATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAAT 775767 Query 30209 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 |||| || || | | ||| ||| ||||||||||||||| || || ||||| | Sbjct 775766 CTCCTTCCTCTCGGGTGGGGAATCCCAGGCTGTCCAAAAAGTCTCGAGACCCATTGGCAT 775707 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||||||||| || ||||| || || ||||| | || ||||| || Sbjct 775706 CCCAGATCTTCACTCCCTTGGAAGACAGTTCTTTAGCATTGGTGGATCC 775658 >seq29 Length=23005217 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || || ||||| |||| || || || ||| ||| |||||||||||| || || Sbjct 2169105 TTGAGTTCTCTACTGAGAACTAAATTAATTCTATCTTTCAAAGGTCTATTCTTCTCAGGA 2169046 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| ||||| |||||||| ||||||| ||||| || ||| Sbjct 2169045 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 2168998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408586111289279