Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichechus_20manatus_20latirostris_20[refseq_20GCF_5F000243295.1_202
012-01-23] 6,323 sequences; 3,103,808,406 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq4 187 2e-42
seq16 159 3e-34
seq256 136 3e-27
seq29 96.9 3e-15
>seq4
Length=36583390
Score = 187 bits (206), Expect = 2e-42
Identities = 425/631 (67%), Gaps = 19/631 (3%)
Strand=Plus/Minus
Query 29765 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 29824
|||| || ||||| || || |||| ||||||| ||||| || || ||||| | ||
Sbjct 19718322 TGGGGAAAGGTCTTGGTTCTCTCTGGAGCTGAACTTTCAGGGGCTCAGTGTGATTCTGGA 19718263
Query 29825 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884
| | | || ||||||| || | |||| || | || | || || ||| ||| |
Sbjct 19718262 AAATAGGTGCATCTCCCAAAGTATATTCAAAGTCACGTGGCTTCAGGCCTATGATGTGTG 19718203
Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 29944
| | |||| |||| | | |||||||| ||| | || |||||||| || |||||||
Sbjct 19718202 CGAC--TGTAGGTGAACTGGGCATAGCTGGCAATGGTGAAAGGTACCCCCAGGCCCATGT 19718145
Query 29945 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30004
|| |||||||| || ||||| || | ||||| | || ||| | ||||| || |
Sbjct 19718144 ATCCTGACCTCTGCTACAGCTGGCAGGTCAGCTCACTGTTCACCACAGAGAACTGGCAAA 19718085
Query 30005 TGGTGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAGTCTTTGGGG-TTCCAGGCGCACA 30061
|| ||||| |||| || ||| | |||| ||| | ||| || ||| | |||||||
Sbjct 19718084 GGGCATGGCAGGGAGTTAGCGCCGTCTGAGG---AAGGCCTTGTGGATTCTAAGCGCACA 19718028
Query 30062 CGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGAT 30121
|||||| | |||| | | |||||| | |||| ||| | ||||||||||| |
Sbjct 19718027 TGATGATTCTTCTGTGT-CAGGGTTGGTTTTGATTGTGTCAGTAACCTTTTGCAGCTGGT 19717969
Query 30122 CCACCCC----CATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGC 30177
| || || | | | | | |||| ||| || | || ||||| | ||||||
Sbjct 19717968 CTACTCCTTGACCTACACCA----TCTGAATTCAGATCTTTATATTCTGCCTCAAAATGC 19717913
Query 30178 CTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTC 30237
|||||||| || || || || || || ||||| ||||| | | ||| |||
Sbjct 19717912 CTCCACTGAAAGCCATAAACTGGGCCTGAATCTCCTTCTTCTCAGGTGAAGAATCCCAGG 19717853
Query 30238 TTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGC 30297
||||||||||||||| ||| || |||| ||||||||||| || ||||| || ||
Sbjct 19717852 CTGTCCAAAAAGTCTCGGGACCCACTGGCATCCCAGATCTTCACTCCCTTGGAAGACAGT 19717793
Query 30298 TCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAA 30357
||| | | || ||||| ||| ||| |||||||| ||| ||||| || ||| |
Sbjct 19717792 TCTCTAGCATTGGTGGATCCT-TGATACGCCACAGCAACTCTTCCACAAC-ACCTGTGCA 19717735
Query 30358 AAGACCCTCTTGGTCGTGAGGAGGGGAAACT 30388
|| || | |||||| || || || |||||||
Sbjct 19717734 AACACACGCTTGGTTGTCAGCAGAGGAAACT 19717704
>seq16
Length=28134011
Score = 159 bits (176), Expect = 3e-34
Identities = 352/523 (67%), Gaps = 10/523 (2%)
Strand=Plus/Plus
Query 29765 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 29824
|||| || ||||| || || | ||||||| ||||| || || | ||||| |||||
Sbjct 9569086 TGGGGAAAGGTCTTGGTTCTCGAGTGAGCTGAACTTTCAGGGGCTCAATGTGATTCAGGT 9569145
Query 29825 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884
| | || || ||||||| || || ||||| || || || | || | | | |||
Sbjct 9569146 AAATATGTGCATCTCCCAAAGTATGCACAAAGTCACCTGGCTTCAGGCTCATTATGTGTT 9569205
Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 29944
| ||||| ||||| || | ||||||| ||||| || || ||||| || |||||||
Sbjct 9569206 TGGTTATGTAGGTGAGCAGGTGGAAGCTGGCCATGTTGAAAGGCACCCC-AGGCCCATGT 9569264
Query 29945 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 30004
| || ||| ||||||| ||||| || || ||||| | || ||| ||| |||| || |
Sbjct 9569265 CTCCTGACTTCTGGTA-AGCTGGCAGGACAGCTCACTGT---TCATGTAGGACTGGCAAA 9569320
Query 30005 TGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGA 30064
| ||||| ||||| | || | || | |||||| || ||||| ||| ||
Sbjct 9569321 GGACTTGGCAAGGAGGCATCACCGTCAGAGGAAGGTCTTTTGGATTCCAATAACACGTGA 9569380
Query 30065 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 30124
|||| | || || || |||||| | |||| | | | | ||||| |||| || |
Sbjct 9569381 TGATTCTTCTATCCTCAGGGTTGCTTTTGATTGTGGCAATAAC--TTTGCTGCTGGTCTA 9569438
Query 30125 CCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACT 30184
| || || || || | || |||| || | | ||||| || ||||| |||||||
Sbjct 9569439 CTCCTTGGCCTGAATAATATGAATTCATATCTTTATGTTCTGCCCCAAAATGTCTCCACT 9569498
Query 30185 GGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCA 30244
| || || || || || |||| ||| | ||| |||| ||| ||| | ||||
Sbjct 9569499 GAAAGCCATAAACTGGGCCCAAATCTTCTTCTAGCCTGGA---GAATCCCAGGCTTTCCA 9569555
Query 30245 AAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTT 30287
|||||||| ||| || ||| | ||||||||||| || |||||
Sbjct 9569556 CAAAGTCTCGGGACCCATTGACATCCCAGATCTTCACTCCCTT 9569598
>seq256
Length=2651488
Score = 136 bits (150), Expect = 3e-27
Identities = 125/158 (79%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 29872 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 29931
||||||| ||| || |||||||| ||||| || | ||||||||||||||| || || |||
Sbjct 779449 CCGGTGATGTGTGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACC 779390
Query 29932 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACG 29991
|| || |||||||| || ||||||||||| ||||| || || ||||| || | |||
Sbjct 779389 CCCAGGCCCATGTCGCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACCACA 779330
Query 29992 TAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCAT 30029
|| ||||| || | || |||||| ||||| || |||||
Sbjct 779329 TAGAACTGGCAAAGGGCGTGGCAGGGAGGCAGCGCCAT 779292
Score = 89.7 bits (98), Expect = 4e-13
Identities = 121/169 (72%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 30149 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30208
|||| || | || ||||| || |||||||||||||| || || || || || || | |
Sbjct 775826 TCATATCTTTATATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAAT 775767
Query 30209 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268
|||| || || | | ||| ||| ||||||||||||||| || || ||||| |
Sbjct 775766 CTCCTTCCTCTCGGGTGGGGAATCCCAGGCTGTCCAAAAAGTCTCGAGACCCATTGGCAT 775707
Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317
|||||||||| || ||||| || || ||||| | || ||||| ||
Sbjct 775706 CCCAGATCTTCACTCCCTTGGAAGACAGTTCTTTAGCATTGGTGGATCC 775658
>seq29
Length=23005217
Score = 96.9 bits (106), Expect = 3e-15
Identities = 86/108 (80%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161
|| || || || ||||| |||| || || || ||| ||| |||||||||||| || ||
Sbjct 2169105 TTGAGTTCTCTACTGAGAACTAAATTAATTCTATCTTTCAAAGGTCTATTCTTCTCAGGA 2169046
Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209
||||||||||| ||||| |||||||| ||||||| ||||| || |||
Sbjct 2169045 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 2168998
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408586111289279
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |